Run of fresh-snapshots for bio-eagle

Try this locally (using silver-platter):

debian-svp new-upstream --snapshot bio-eagle 

Merge these changes:

git pull https://janitor.debian.net/git/bio-eagle new-upstream-snapshot

Summary

Merged new upstream version: 2.4.1+git20190330.10fe822 (was: 2.4.1).

Diff

=== modified file 'debian/changelog'
--- a/debian/changelog	2018-11-28 06:56:52 +0000
+++ b/debian/changelog	2019-09-07 16:19:04 +0000
@@ -1,3 +1,9 @@
+bio-eagle (2.4.1+git20190330.10fe822-1) UNRELEASED; urgency=medium
+
+  * New upstream snapshot.
+
+ -- Debian Janitor <janitor@jelmer.uk>  Sat, 07 Sep 2019 16:18:56 +0000
+
 bio-eagle (2.4.1-1) unstable; urgency=medium
 
   * New upstream release.

=== modified file 'debian/patches/Makefile_config.patch'
--- a/debian/patches/Makefile_config.patch	2018-11-28 06:39:24 +0000
+++ b/debian/patches/Makefile_config.patch	2019-09-07 16:19:19 +0000
@@ -3,8 +3,10 @@
 Last-Update: 2018-11-28
 Forwarded: not-needed
 
---- a/src/Makefile
-+++ b/src/Makefile
+Index: bio-eagle/src/Makefile
+===================================================================
+--- bio-eagle.orig/src/Makefile
++++ bio-eagle/src/Makefile
 @@ -9,20 +9,20 @@
  
  ### modify these paths to local BLAS, Boost and htslib install directories
@@ -32,7 +34,7 @@
  
  
  ifeq ($(strip ${linking}),)
-@@ -41,7 +41,7 @@
+@@ -41,7 +41,7 @@ ifeq (${prof},true)
  	LFLAGS += -pg
  endif
  
@@ -41,7 +43,7 @@
  LFLAGS += -fopenmp
  
  
-@@ -96,16 +96,16 @@
+@@ -96,16 +96,16 @@ endif
  
  
  T = eagle

=== added file 'src/memcpy.cpp'
--- a/src/memcpy.cpp	1970-01-01 00:00:00 +0000
+++ b/src/memcpy.cpp	2019-03-31 01:17:22 +0000
@@ -0,0 +1,9 @@
+#include <cstring>
+
+/* some systems do not have newest memcpy@@GLIBC_2.14 - stay with old good one */
+asm (".symver memcpy, memcpy@GLIBC_2.2.5");
+
+extern "C" void *__wrap_memcpy(void *dest, const void *src, size_t n)
+{
+  return memcpy(dest, src, n);
+}

Full build log Full worker log