New Upstream Release - r-bioc-aroma.light
Ready changes
Summary
Merged new upstream version: 3.30.0 (was: 3.28.0).
Diff
diff --git a/DESCRIPTION b/DESCRIPTION
index fea6f05..3cd5794 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,5 +1,5 @@
Package: aroma.light
-Version: 3.28.0
+Version: 3.30.0
Depends: R (>= 2.15.2)
Imports: stats, R.methodsS3 (>= 1.7.1), R.oo (>= 1.23.0), R.utils (>=
2.9.0), matrixStats (>= 0.55.0)
@@ -21,12 +21,12 @@ BugReports: https://github.com/HenrikBengtsson/aroma.light/issues
LazyLoad: TRUE
Encoding: latin1
git_url: https://git.bioconductor.org/packages/aroma.light
-git_branch: RELEASE_3_16
-git_last_commit: a61bf3e
-git_last_commit_date: 2022-11-01
-Date/Publication: 2022-11-01
+git_branch: RELEASE_3_17
+git_last_commit: 0fc5e85
+git_last_commit_date: 2023-04-25
+Date/Publication: 2023-04-25
NeedsCompilation: no
-Packaged: 2022-11-01 20:49:07 UTC; biocbuild
+Packaged: 2023-04-25 20:11:01 UTC; biocbuild
Author: Henrik Bengtsson [aut, cre, cph],
Pierre Neuvial [ctb],
Aaron Lun [ctb]
diff --git a/debian/changelog b/debian/changelog
index 0ab456b..a2686df 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+r-bioc-aroma.light (3.30.0-1) UNRELEASED; urgency=low
+
+ * New upstream release.
+
+ -- Debian Janitor <janitor@jelmer.uk> Wed, 07 Jun 2023 05:35:36 -0000
+
r-bioc-aroma.light (3.28.0-1) unstable; urgency=medium
* New upstream version
diff --git a/debian/patches/privacy_breach.patch b/debian/patches/privacy_breach.patch
index 8e9c5b9..d83013f 100644
--- a/debian/patches/privacy_breach.patch
+++ b/debian/patches/privacy_breach.patch
@@ -3,8 +3,10 @@ Last-Update: Sat, 30 Sep 2017 15:33:05 +0200
Description: I have not found any reference to the scripts
from remote so this potential privacy breach is removed
---- a/inst/rsp/NormalizationWithWeights/TypesOfWeights.html
-+++ b/inst/rsp/NormalizationWithWeights/TypesOfWeights.html
+Index: r-bioc-aroma.light.git/inst/rsp/NormalizationWithWeights/TypesOfWeights.html
+===================================================================
+--- r-bioc-aroma.light.git.orig/inst/rsp/NormalizationWithWeights/TypesOfWeights.html
++++ r-bioc-aroma.light.git/inst/rsp/NormalizationWithWeights/TypesOfWeights.html
@@ -6,7 +6,6 @@
<link media="screen" type="text/css" rel="StyleSheet" href="style.css">
<meta content="text/html; charset=iso-8859-1" http-equiv="Content-Type">
diff --git a/debian/patches/remove_test_using_external_functions.patch b/debian/patches/remove_test_using_external_functions.patch
index e415bef..a7ae1b5 100644
--- a/debian/patches/remove_test_using_external_functions.patch
+++ b/debian/patches/remove_test_using_external_functions.patch
@@ -5,7 +5,9 @@ Description: Remove test using external not packaged function
This example requires plot3d() in R.basic [http://www.braju.com/R/]
But this URL does not exist.
---- a/tests/distanceBetweenLines.R
+Index: r-bioc-aroma.light.git/tests/distanceBetweenLines.R
+===================================================================
+--- r-bioc-aroma.light.git.orig/tests/distanceBetweenLines.R
+++ /dev/null
@@ -1,82 +0,0 @@
-library("aroma.light")
@@ -90,7 +92,9 @@ Description: Remove test using external not packaged function
-
-} # for (zzz in 0)
-rm(zzz)
---- a/tests/wpca.matrix.R
+Index: r-bioc-aroma.light.git/tests/wpca.matrix.R
+===================================================================
+--- r-bioc-aroma.light.git.orig/tests/wpca.matrix.R
+++ /dev/null
@@ -1,72 +0,0 @@
-library("aroma.light")
@@ -165,7 +169,9 @@ Description: Remove test using external not packaged function
-
-} # for (zzz in 0)
-rm(zzz)
---- a/tests/iwpca.matrix.R
+Index: r-bioc-aroma.light.git/tests/iwpca.matrix.R
+===================================================================
+--- r-bioc-aroma.light.git.orig/tests/iwpca.matrix.R
+++ /dev/null
@@ -1,76 +0,0 @@
-library("aroma.light")