New Upstream Snapshot - libbio-cluster-perl
Ready changes
Summary
Merged new upstream version: 1.7.3+git20181001.1.d516dbe (was: 1.7.3).
Resulting package
Built on 2022-10-24T10:53 (took 12m13s)
The resulting binary packages can be installed (if you have the apt repository enabled) by running one of:
apt install -t fresh-snapshots libbio-cluster-perl
Lintian Result
Diff
diff --git a/Changes b/Changes
index 5bb61d4..238457a 100644
--- a/Changes
+++ b/Changes
@@ -1,5 +1,7 @@
Summary of important user-visible changes for Bio-Cluster
---------------------------------------------------------
+1.7.3 2022-10-24 10:49:27+00:00 UTC
+
1.7.3 2018-09-30 23:34:41-05:00 America/Chicago
* First release after split from bioperl-live.
diff --git a/LICENSE b/LICENSE
index 4ef3278..2202961 100644
--- a/LICENSE
+++ b/LICENSE
@@ -1,4 +1,4 @@
-This software is copyright (c) 2018 by Allen Day <allenday@ucla.edu>, Andrew Macgregor <andrew@anatomy.otago.ac.nz>, David Green, GNF -- Genomics Institute of the Novartis Research Foundation, Hilmar Lapp <hlapp@gmx.net>, Jo-Ann Stanton, Shawn Hoon <shawnh@fugu-sg.org>, Stan Nelson <snelson@ucla.edu>.
+This software is copyright (c) 2022 by Allen Day <allenday@ucla.edu>, Andrew Macgregor <andrew@anatomy.otago.ac.nz>, David Green, GNF -- Genomics Institute of the Novartis Research Foundation, Hilmar Lapp <hlapp@gmx.net>, Jo-Ann Stanton, Shawn Hoon <shawnh@fugu-sg.org>, Stan Nelson <snelson@ucla.edu>.
This is free software; you can redistribute it and/or modify it under
the same terms as the Perl 5 programming language system itself.
@@ -12,7 +12,7 @@ b) the "Artistic License"
--- The GNU General Public License, Version 1, February 1989 ---
-This software is Copyright (c) 2018 by Allen Day <allenday@ucla.edu>, Andrew Macgregor <andrew@anatomy.otago.ac.nz>, David Green, GNF -- Genomics Institute of the Novartis Research Foundation, Hilmar Lapp <hlapp@gmx.net>, Jo-Ann Stanton, Shawn Hoon <shawnh@fugu-sg.org>, Stan Nelson <snelson@ucla.edu>.
+This software is Copyright (c) 2022 by Allen Day <allenday@ucla.edu>, Andrew Macgregor <andrew@anatomy.otago.ac.nz>, David Green, GNF -- Genomics Institute of the Novartis Research Foundation, Hilmar Lapp <hlapp@gmx.net>, Jo-Ann Stanton, Shawn Hoon <shawnh@fugu-sg.org>, Stan Nelson <snelson@ucla.edu>.
This is free software, licensed under:
@@ -272,7 +272,7 @@ That's all there is to it!
--- The Artistic License 1.0 ---
-This software is Copyright (c) 2018 by Allen Day <allenday@ucla.edu>, Andrew Macgregor <andrew@anatomy.otago.ac.nz>, David Green, GNF -- Genomics Institute of the Novartis Research Foundation, Hilmar Lapp <hlapp@gmx.net>, Jo-Ann Stanton, Shawn Hoon <shawnh@fugu-sg.org>, Stan Nelson <snelson@ucla.edu>.
+This software is Copyright (c) 2022 by Allen Day <allenday@ucla.edu>, Andrew Macgregor <andrew@anatomy.otago.ac.nz>, David Green, GNF -- Genomics Institute of the Novartis Research Foundation, Hilmar Lapp <hlapp@gmx.net>, Jo-Ann Stanton, Shawn Hoon <shawnh@fugu-sg.org>, Stan Nelson <snelson@ucla.edu>.
This is free software, licensed under:
@@ -292,21 +292,21 @@ Definitions:
- "Package" refers to the collection of files distributed by the Copyright
Holder, and derivatives of that collection of files created through
- textual modification.
+ textual modification.
- "Standard Version" refers to such a Package if it has not been modified,
or has been modified in accordance with the wishes of the Copyright
- Holder.
+ Holder.
- "Copyright Holder" is whoever is named in the copyright or copyrights for
- the package.
+ the package.
- "You" is you, if you're thinking about copying or distributing this Package.
- "Reasonable copying fee" is whatever you can justify on the basis of media
cost, duplication charges, time of people involved, and so on. (You will
not be required to justify it to the Copyright Holder, but only to the
- computing community at large as a market that must bear the fee.)
+ computing community at large as a market that must bear the fee.)
- "Freely Available" means that no fee is charged for the item itself, though
there may be fees involved in handling the item. It also means that
recipients of the item may redistribute it under the same conditions they
- received it.
+ received it.
1. You may make and give away verbatim copies of the source form of the
Standard Version of this Package without restriction, provided that you
@@ -373,7 +373,7 @@ products derived from this software without specific prior written permission.
9. THIS PACKAGE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR IMPLIED
WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF
-MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE.
+MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
The End
diff --git a/MANIFEST b/MANIFEST
index 0716630..8f7e4d7 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -1,4 +1,4 @@
-# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.010.
+# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.025.
Changes
LICENSE
MANIFEST
diff --git a/META.json b/META.json
index be73712..7ec8563 100644
--- a/META.json
+++ b/META.json
@@ -1,5 +1,5 @@
{
- "abstract" : "BioPerl cluster modules",
+ "abstract" : "BioPerl cluster distribution",
"author" : [
"Allen Day <allenday@ucla.edu>",
"Andrew Macgregor <andrew@anatomy.otago.ac.nz>",
@@ -10,7 +10,7 @@
"Stan Nelson <snelson@ucla.edu>"
],
"dynamic_config" : 0,
- "generated_by" : "Dist::Zilla version 6.010, CPAN::Meta::Converter version 2.150010",
+ "generated_by" : "Dist::Zilla version 6.025, CPAN::Meta::Converter version 2.150010",
"license" : [
"perl_5"
],
@@ -53,6 +53,7 @@
"XML::SAX" : "0",
"base" : "0",
"strict" : "0",
+ "utf8" : "0",
"warnings" : "0"
}
},
@@ -84,7 +85,7 @@
"version" : "1.7.3",
"x_Dist_Zilla" : {
"perl" : {
- "version" : "5.026000"
+ "version" : "5.036000"
},
"plugins" : [
{
@@ -101,42 +102,42 @@
}
},
"name" : "@BioPerl/@Filter/GatherDir",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::PruneCruft",
"name" : "@BioPerl/@Filter/PruneCruft",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::ManifestSkip",
"name" : "@BioPerl/@Filter/ManifestSkip",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::MetaYAML",
"name" : "@BioPerl/@Filter/MetaYAML",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::License",
"name" : "@BioPerl/@Filter/License",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::ExtraTests",
"name" : "@BioPerl/@Filter/ExtraTests",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::ExecDir",
"name" : "@BioPerl/@Filter/ExecDir",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::ShareDir",
"name" : "@BioPerl/@Filter/ShareDir",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::MakeMaker",
@@ -146,47 +147,47 @@
}
},
"name" : "@BioPerl/@Filter/MakeMaker",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::Manifest",
"name" : "@BioPerl/@Filter/Manifest",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::TestRelease",
"name" : "@BioPerl/@Filter/TestRelease",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::ConfirmRelease",
"name" : "@BioPerl/@Filter/ConfirmRelease",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::UploadToCPAN",
"name" : "@BioPerl/@Filter/UploadToCPAN",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::MetaConfig",
"name" : "@BioPerl/MetaConfig",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::MetaJSON",
"name" : "@BioPerl/MetaJSON",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::PkgVersion",
"name" : "@BioPerl/PkgVersion",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::PodSyntaxTests",
"name" : "@BioPerl/PodSyntaxTests",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::Test::Compile",
@@ -209,7 +210,7 @@
}
},
"name" : "@BioPerl/Test::Compile",
- "version" : "2.057"
+ "version" : "2.058"
},
{
"class" : "Dist::Zilla::Plugin::MojibakeTests",
@@ -219,7 +220,7 @@
{
"class" : "Dist::Zilla::Plugin::AutoPrereqs",
"name" : "@BioPerl/AutoPrereqs",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::AutoMetaResources",
@@ -229,17 +230,17 @@
{
"class" : "Dist::Zilla::Plugin::MetaResources",
"name" : "@BioPerl/MetaResources",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::Encoding",
"name" : "@BioPerl/Encoding",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::NextRelease",
"name" : "@BioPerl/NextRelease",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::Git::Check",
@@ -256,19 +257,20 @@
"changelog" : "Changes"
},
"Dist::Zilla::Role::Git::Repo" : {
- "git_version" : "2.14.1",
+ "git_version" : "2.37.2",
"repo_root" : "."
}
},
"name" : "@BioPerl/Git::Check",
- "version" : "2.042"
+ "version" : "2.048"
},
{
"class" : "Dist::Zilla::Plugin::Git::Commit",
"config" : {
"Dist::Zilla::Plugin::Git::Commit" : {
"add_files_in" : [],
- "commit_msg" : "v%v%n%n%c"
+ "commit_msg" : "v%V%n%n%c",
+ "signoff" : 0
},
"Dist::Zilla::Role::Git::DirtyFiles" : {
"allow_dirty" : [
@@ -279,7 +281,7 @@
"changelog" : "Changes"
},
"Dist::Zilla::Role::Git::Repo" : {
- "git_version" : "2.14.1",
+ "git_version" : "2.37.2",
"repo_root" : "."
},
"Dist::Zilla::Role::Git::StringFormatter" : {
@@ -287,7 +289,7 @@
}
},
"name" : "@BioPerl/Git::Commit",
- "version" : "2.042"
+ "version" : "2.048"
},
{
"class" : "Dist::Zilla::Plugin::Git::Tag",
@@ -301,7 +303,7 @@
"tag_message" : "%N-v%v"
},
"Dist::Zilla::Role::Git::Repo" : {
- "git_version" : "2.14.1",
+ "git_version" : "2.37.2",
"repo_root" : "."
},
"Dist::Zilla::Role::Git::StringFormatter" : {
@@ -309,57 +311,194 @@
}
},
"name" : "@BioPerl/Git::Tag",
- "version" : "2.042"
+ "version" : "2.048"
+ },
+ {
+ "class" : "Dist::Zilla::Plugin::FileFinder::ByName",
+ "name" : "PodWeaver-Ready",
+ "version" : "6.025"
+ },
+ {
+ "class" : "Dist::Zilla::Plugin::PodWeaver",
+ "config" : {
+ "Dist::Zilla::Plugin::PodWeaver" : {
+ "config_plugins" : [
+ "@BioPerl"
+ ],
+ "finder" : [
+ "PodWeaver-Ready"
+ ],
+ "plugins" : [
+ {
+ "class" : "Pod::Weaver::Plugin::EnsurePod5",
+ "name" : "@CorePrep/EnsurePod5",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Plugin::H1Nester",
+ "name" : "@CorePrep/H1Nester",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Section::Name",
+ "name" : "@BioPerl/Name",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Section::Version",
+ "name" : "@BioPerl/Version",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Section::Region",
+ "name" : "@BioPerl/prelude",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Section::Generic",
+ "name" : "SYNOPSIS",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Section::Generic",
+ "name" : "DESCRIPTION",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Section::Generic",
+ "name" : "OVERVIEW",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Section::Collect",
+ "name" : "ATTRIBUTES",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Section::Collect",
+ "name" : "METHODS",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Section::Collect",
+ "name" : "FUNCTIONS",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Section::Collect",
+ "name" : "INTERNAL METHODS",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Section::Leftovers",
+ "name" : "@BioPerl/Leftovers",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Section::Region",
+ "name" : "@BioPerl/postlude",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Section::GenerateSection",
+ "name" : "FEEDBACK",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Section::GenerateSection",
+ "name" : "Mailing lists",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Section::GenerateSection",
+ "name" : "Support",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Section::GenerateSection",
+ "name" : "Reporting bugs",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Section::Legal::Complicated",
+ "name" : "@BioPerl/Legal",
+ "version" : "1.23"
+ },
+ {
+ "class" : "Pod::Weaver::Section::Contributors",
+ "name" : "@BioPerl/Contributors",
+ "version" : "0.009"
+ },
+ {
+ "class" : "Pod::Weaver::Plugin::SingleEncoding",
+ "name" : "SingleEncoding",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Plugin::Transformer",
+ "name" : "@BioPerl/List",
+ "version" : "4.018"
+ },
+ {
+ "class" : "Pod::Weaver::Plugin::EnsureUniqueSections",
+ "name" : "EnsureUniqueSections",
+ "version" : "0.163250"
+ }
+ ]
+ }
+ },
+ "name" : "PodWeaver",
+ "version" : "4.009"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":InstallModules",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":IncModules",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":TestFiles",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":ExtraTestFiles",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":ExecFiles",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":PerlExecFiles",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":ShareFiles",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":MainModule",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":AllFiles",
- "version" : "6.010"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":NoFiles",
- "version" : "6.010"
+ "version" : "6.025"
}
],
"zilla" : {
@@ -367,9 +506,11 @@
"config" : {
"is_trial" : 0
},
- "version" : "6.010"
+ "version" : "6.025"
}
},
- "x_serialization_backend" : "Cpanel::JSON::XS version 3.0239"
+ "x_generated_by_perl" : "v5.36.0",
+ "x_serialization_backend" : "Cpanel::JSON::XS version 4.32",
+ "x_spdx_expression" : "Artistic-1.0-Perl OR GPL-1.0-or-later"
}
diff --git a/META.yml b/META.yml
index fc4447e..6491475 100644
--- a/META.yml
+++ b/META.yml
@@ -1,5 +1,5 @@
---
-abstract: 'BioPerl cluster modules'
+abstract: 'BioPerl cluster distribution'
author:
- 'Allen Day <allenday@ucla.edu>'
- 'Andrew Macgregor <andrew@anatomy.otago.ac.nz>'
@@ -19,7 +19,7 @@ build_requires:
configure_requires:
ExtUtils::MakeMaker: '0'
dynamic_config: 0
-generated_by: 'Dist::Zilla version 6.010, CPAN::Meta::Converter version 2.150010'
+generated_by: 'Dist::Zilla version 6.025, CPAN::Meta::Converter version 2.150010'
license: perl
meta-spec:
url: http://module-build.sourceforge.net/META-spec-v1.4.html
@@ -46,6 +46,7 @@ requires:
XML::SAX: '0'
base: '0'
strict: '0'
+ utf8: '0'
warnings: '0'
resources:
bugtracker: https://github.com/bioperl/bio-cluster/issues
@@ -54,7 +55,7 @@ resources:
version: 1.7.3
x_Dist_Zilla:
perl:
- version: '5.026000'
+ version: '5.036000'
plugins:
-
class: Dist::Zilla::Plugin::GatherDir
@@ -68,79 +69,79 @@ x_Dist_Zilla:
prune_directory: []
root: .
name: '@BioPerl/@Filter/GatherDir'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::PruneCruft
name: '@BioPerl/@Filter/PruneCruft'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::ManifestSkip
name: '@BioPerl/@Filter/ManifestSkip'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::MetaYAML
name: '@BioPerl/@Filter/MetaYAML'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::License
name: '@BioPerl/@Filter/License'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::ExtraTests
name: '@BioPerl/@Filter/ExtraTests'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::ExecDir
name: '@BioPerl/@Filter/ExecDir'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::ShareDir
name: '@BioPerl/@Filter/ShareDir'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::MakeMaker
config:
Dist::Zilla::Role::TestRunner:
default_jobs: 1
name: '@BioPerl/@Filter/MakeMaker'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::Manifest
name: '@BioPerl/@Filter/Manifest'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::TestRelease
name: '@BioPerl/@Filter/TestRelease'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::ConfirmRelease
name: '@BioPerl/@Filter/ConfirmRelease'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::UploadToCPAN
name: '@BioPerl/@Filter/UploadToCPAN'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::MetaConfig
name: '@BioPerl/MetaConfig'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::MetaJSON
name: '@BioPerl/MetaJSON'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::PkgVersion
name: '@BioPerl/PkgVersion'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::PodSyntaxTests
name: '@BioPerl/PodSyntaxTests'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::Test::Compile
config:
Dist::Zilla::Plugin::Test::Compile:
- bail_out_on_fail: '0'
+ bail_out_on_fail: 0
fail_on_warning: author
fake_home: 0
filename: t/00-compile.t
@@ -153,7 +154,7 @@ x_Dist_Zilla:
skips: []
switch: []
name: '@BioPerl/Test::Compile'
- version: '2.057'
+ version: '2.058'
-
class: Dist::Zilla::Plugin::MojibakeTests
name: '@BioPerl/MojibakeTests'
@@ -161,7 +162,7 @@ x_Dist_Zilla:
-
class: Dist::Zilla::Plugin::AutoPrereqs
name: '@BioPerl/AutoPrereqs'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::AutoMetaResources
name: '@BioPerl/AutoMetaResources'
@@ -169,15 +170,15 @@ x_Dist_Zilla:
-
class: Dist::Zilla::Plugin::MetaResources
name: '@BioPerl/MetaResources'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::Encoding
name: '@BioPerl/Encoding'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::NextRelease
name: '@BioPerl/NextRelease'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::Git::Check
config:
@@ -190,16 +191,17 @@ x_Dist_Zilla:
allow_dirty_match: []
changelog: Changes
Dist::Zilla::Role::Git::Repo:
- git_version: 2.14.1
+ git_version: 2.37.2
repo_root: .
name: '@BioPerl/Git::Check'
- version: '2.042'
+ version: '2.048'
-
class: Dist::Zilla::Plugin::Git::Commit
config:
Dist::Zilla::Plugin::Git::Commit:
add_files_in: []
- commit_msg: v%v%n%n%c
+ commit_msg: v%V%n%n%c
+ signoff: 0
Dist::Zilla::Role::Git::DirtyFiles:
allow_dirty:
- Changes
@@ -207,12 +209,12 @@ x_Dist_Zilla:
allow_dirty_match: []
changelog: Changes
Dist::Zilla::Role::Git::Repo:
- git_version: 2.14.1
+ git_version: 2.37.2
repo_root: .
Dist::Zilla::Role::Git::StringFormatter:
time_zone: local
name: '@BioPerl/Git::Commit'
- version: '2.042'
+ version: '2.048'
-
class: Dist::Zilla::Plugin::Git::Tag
config:
@@ -224,55 +226,164 @@ x_Dist_Zilla:
tag_format: '%N-v%v'
tag_message: '%N-v%v'
Dist::Zilla::Role::Git::Repo:
- git_version: 2.14.1
+ git_version: 2.37.2
repo_root: .
Dist::Zilla::Role::Git::StringFormatter:
time_zone: local
name: '@BioPerl/Git::Tag'
- version: '2.042'
+ version: '2.048'
+ -
+ class: Dist::Zilla::Plugin::FileFinder::ByName
+ name: PodWeaver-Ready
+ version: '6.025'
+ -
+ class: Dist::Zilla::Plugin::PodWeaver
+ config:
+ Dist::Zilla::Plugin::PodWeaver:
+ config_plugins:
+ - '@BioPerl'
+ finder:
+ - PodWeaver-Ready
+ plugins:
+ -
+ class: Pod::Weaver::Plugin::EnsurePod5
+ name: '@CorePrep/EnsurePod5'
+ version: '4.018'
+ -
+ class: Pod::Weaver::Plugin::H1Nester
+ name: '@CorePrep/H1Nester'
+ version: '4.018'
+ -
+ class: Pod::Weaver::Section::Name
+ name: '@BioPerl/Name'
+ version: '4.018'
+ -
+ class: Pod::Weaver::Section::Version
+ name: '@BioPerl/Version'
+ version: '4.018'
+ -
+ class: Pod::Weaver::Section::Region
+ name: '@BioPerl/prelude'
+ version: '4.018'
+ -
+ class: Pod::Weaver::Section::Generic
+ name: SYNOPSIS
+ version: '4.018'
+ -
+ class: Pod::Weaver::Section::Generic
+ name: DESCRIPTION
+ version: '4.018'
+ -
+ class: Pod::Weaver::Section::Generic
+ name: OVERVIEW
+ version: '4.018'
+ -
+ class: Pod::Weaver::Section::Collect
+ name: ATTRIBUTES
+ version: '4.018'
+ -
+ class: Pod::Weaver::Section::Collect
+ name: METHODS
+ version: '4.018'
+ -
+ class: Pod::Weaver::Section::Collect
+ name: FUNCTIONS
+ version: '4.018'
+ -
+ class: Pod::Weaver::Section::Collect
+ name: 'INTERNAL METHODS'
+ version: '4.018'
+ -
+ class: Pod::Weaver::Section::Leftovers
+ name: '@BioPerl/Leftovers'
+ version: '4.018'
+ -
+ class: Pod::Weaver::Section::Region
+ name: '@BioPerl/postlude'
+ version: '4.018'
+ -
+ class: Pod::Weaver::Section::GenerateSection
+ name: FEEDBACK
+ version: '4.018'
+ -
+ class: Pod::Weaver::Section::GenerateSection
+ name: 'Mailing lists'
+ version: '4.018'
+ -
+ class: Pod::Weaver::Section::GenerateSection
+ name: Support
+ version: '4.018'
+ -
+ class: Pod::Weaver::Section::GenerateSection
+ name: 'Reporting bugs'
+ version: '4.018'
+ -
+ class: Pod::Weaver::Section::Legal::Complicated
+ name: '@BioPerl/Legal'
+ version: '1.23'
+ -
+ class: Pod::Weaver::Section::Contributors
+ name: '@BioPerl/Contributors'
+ version: '0.009'
+ -
+ class: Pod::Weaver::Plugin::SingleEncoding
+ name: SingleEncoding
+ version: '4.018'
+ -
+ class: Pod::Weaver::Plugin::Transformer
+ name: '@BioPerl/List'
+ version: '4.018'
+ -
+ class: Pod::Weaver::Plugin::EnsureUniqueSections
+ name: EnsureUniqueSections
+ version: '0.163250'
+ name: PodWeaver
+ version: '4.009'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':InstallModules'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':IncModules'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':TestFiles'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':ExtraTestFiles'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':ExecFiles'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':PerlExecFiles'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':ShareFiles'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':MainModule'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':AllFiles'
- version: '6.010'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':NoFiles'
- version: '6.010'
+ version: '6.025'
zilla:
class: Dist::Zilla::Dist::Builder
config:
- is_trial: '0'
- version: '6.010'
-x_serialization_backend: 'YAML::Tiny version 1.70'
+ is_trial: 0
+ version: '6.025'
+x_generated_by_perl: v5.36.0
+x_serialization_backend: 'YAML::Tiny version 1.73'
+x_spdx_expression: 'Artistic-1.0-Perl OR GPL-1.0-or-later'
diff --git a/Makefile.PL b/Makefile.PL
index c245518..c6ca617 100644
--- a/Makefile.PL
+++ b/Makefile.PL
@@ -1,4 +1,4 @@
-# This file was automatically generated by Dist::Zilla::Plugin::MakeMaker v6.010.
+# This file was automatically generated by Dist::Zilla::Plugin::MakeMaker v6.025.
use strict;
use warnings;
@@ -7,7 +7,7 @@ use 5.006;
use ExtUtils::MakeMaker;
my %WriteMakefileArgs = (
- "ABSTRACT" => "BioPerl cluster modules",
+ "ABSTRACT" => "BioPerl cluster distribution",
"AUTHOR" => "Allen Day <allenday\@ucla.edu>, Andrew Macgregor <andrew\@anatomy.otago.ac.nz>, David Green, Hilmar Lapp <hlapp\@gmx.net>, Jo-Ann Stanton, Shawn Hoon <shawnh\@fugu-sg.org>, Stan Nelson <snelson\@ucla.edu>",
"CONFIGURE_REQUIRES" => {
"ExtUtils::MakeMaker" => 0
@@ -37,6 +37,7 @@ my %WriteMakefileArgs = (
"XML::SAX" => 0,
"base" => 0,
"strict" => 0,
+ "utf8" => 0,
"warnings" => 0
},
"TEST_REQUIRES" => {
@@ -81,6 +82,7 @@ my %FallbackPrereqs = (
"base" => 0,
"lib" => 0,
"strict" => 0,
+ "utf8" => 0,
"warnings" => 0
);
diff --git a/debian/changelog b/debian/changelog
index 6b9341c..b725fee 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+libbio-cluster-perl (1.7.3+git20181001.1.d516dbe-1) UNRELEASED; urgency=low
+
+ * New upstream snapshot.
+
+ -- Debian Janitor <janitor@jelmer.uk> Mon, 24 Oct 2022 10:49:35 -0000
+
libbio-cluster-perl (1.7.3-6) unstable; urgency=medium
* Team upload.
diff --git a/dist.ini b/dist.ini
index 3298013..55d1620 100644
--- a/dist.ini
+++ b/dist.ini
@@ -16,3 +16,10 @@ license = Perl_5
-remove = PodWeaver
-remove = Test::EOL
-remove = Test::NoTabs
+
+[FileFinder::ByName / PodWeaver-Ready]
+file = lib/Bio/Cluster.pm
+
+[PodWeaver]
+config_plugin = @BioPerl
+finder = PodWeaver-Ready
diff --git a/lib/Bio/Cluster.pm b/lib/Bio/Cluster.pm
index 6a8cfe3..9b84097 100644
--- a/lib/Bio/Cluster.pm
+++ b/lib/Bio/Cluster.pm
@@ -1,60 +1,74 @@
-# BioPerl module for Bio::Cluster
-#
-# Please direct questions and support issues to <bioperl-l@bioperl.org>
-#
-# Cared for by Shawn Hoon
-#
-# Copyright Shawn Hoon
-#
-# You may distribute this module under the same terms as perl itself
-
-# POD documentation - main docs before the code
+package Bio::Cluster;
+$Bio::Cluster::VERSION = '1.7.3';
+use utf8;
+use strict;
+use warnings;
+
+# ABSTRACT: BioPerl cluster distribution
+# AUTHOR: See individual modules
+# OWNER: many people (see individual modules for details)
+# LICENSE: Perl_5
+
+
+1;
+
+__END__
+
+=pod
+
+=encoding UTF-8
=head1 NAME
-Bio::Cluster - BioPerl cluster modules
+Bio::Cluster - BioPerl cluster distribution
+
+=head1 VERSION
+
+version 1.7.3
=head1 DESCRIPTION
-Classes and modules here describe the basic structure for a cluster of bioperl
-objects. For a more complete explanation, please see the interface module
-L<Bio::ClusterI> or the Bio::ClusterI-based implementations for specific
-examples.
+Classes and modules here describe the basic structure for a cluster of
+bioperl objects. For a more complete explanation, please see the
+interface module L<Bio::ClusterI> or the L<Bio::ClusterI>based
+implementations for specific examples.
=head1 FEEDBACK
-=head2 Mailing Lists
+=head2 Mailing lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
- bioperl-l@bioperl.org - General discussion
- http://bioperl.org/wiki/Mailing_lists - About the mailing lists
+ bioperl-l@bioperl.org - General discussion
+ https://bioperl.org/Support.html - About the mailing lists
=head2 Support
Please direct usage questions or support issues to the mailing list:
-
I<bioperl-l@bioperl.org>
-
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
-=head2 Reporting Bugs
+=head2 Reporting bugs
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- https://github.com/bioperl/bioperl-live/issues
+ https://github.com/bioperl/bio-cluster/issues
-=head1 AUTHOR - Shawn Hoon
+=head1 AUTHOR
-=cut
+See individual modules
-package Bio::Cluster;
-$Bio::Cluster::VERSION = '1.7.3';
-1;
+=head1 COPYRIGHT
+
+This software is copyright (c) by many people (see individual modules for details).
+
+This software is available under the same terms as the perl 5 programming language system itself.
+
+=cut
diff --git a/t/00-compile.t b/t/00-compile.t
index 4303d7f..dd2740d 100644
--- a/t/00-compile.t
+++ b/t/00-compile.t
@@ -2,7 +2,7 @@ use 5.006;
use strict;
use warnings;
-# this test was generated with Dist::Zilla::Plugin::Test::Compile 2.057
+# this test was generated with Dist::Zilla::Plugin::Test::Compile 2.058
use Test::More;
Debdiff
File lists identical (after any substitutions)
No differences were encountered in the control files