New Upstream Snapshot - libbio-eutilities-perl
Ready changes
Summary
Merged new upstream version: 1.77+git20200309.1.6bd1781 (was: 1.77).
Resulting package
Built on 2022-10-16T03:50 (took 6m38s)
The resulting binary packages can be installed (if you have the apt repository enabled) by running one of:
apt install -t fresh-snapshots libbio-eutilities-perl
Lintian Result
Diff
diff --git a/Changes b/Changes
index e4144a0..8846de9 100644
--- a/Changes
+++ b/Changes
@@ -1,5 +1,7 @@
Revision history for Bio-EUtilities
+1.77 2022-10-16 03:48:14+00:00 UTC
+
1.77 2020-03-09 13:58:30-05:00 America/Chicago
* `bp_genbank_ref_extractor` no longer crashes if the '--api-key'
option is not specified.
diff --git a/LICENSE b/LICENSE
index dd55e09..3696dd0 100644
--- a/LICENSE
+++ b/LICENSE
@@ -292,21 +292,21 @@ Definitions:
- "Package" refers to the collection of files distributed by the Copyright
Holder, and derivatives of that collection of files created through
- textual modification.
+ textual modification.
- "Standard Version" refers to such a Package if it has not been modified,
or has been modified in accordance with the wishes of the Copyright
- Holder.
+ Holder.
- "Copyright Holder" is whoever is named in the copyright or copyrights for
- the package.
+ the package.
- "You" is you, if you're thinking about copying or distributing this Package.
- "Reasonable copying fee" is whatever you can justify on the basis of media
cost, duplication charges, time of people involved, and so on. (You will
not be required to justify it to the Copyright Holder, but only to the
- computing community at large as a market that must bear the fee.)
+ computing community at large as a market that must bear the fee.)
- "Freely Available" means that no fee is charged for the item itself, though
there may be fees involved in handling the item. It also means that
recipients of the item may redistribute it under the same conditions they
- received it.
+ received it.
1. You may make and give away verbatim copies of the source form of the
Standard Version of this Package without restriction, provided that you
@@ -373,7 +373,7 @@ products derived from this software without specific prior written permission.
9. THIS PACKAGE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR IMPLIED
WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF
-MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE.
+MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
The End
diff --git a/MANIFEST b/MANIFEST
index 428916b..c3cf84b 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -1,4 +1,4 @@
-# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.012.
+# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.025.
Changes
LICENSE
MANIFEST
diff --git a/META.json b/META.json
index 541f765..9475cdf 100644
--- a/META.json
+++ b/META.json
@@ -4,7 +4,7 @@
"cjfields <cjfields@cpan.org>"
],
"dynamic_config" : 0,
- "generated_by" : "Dist::Zilla version 6.012, CPAN::Meta::Converter version 2.150010",
+ "generated_by" : "Dist::Zilla version 6.025, CPAN::Meta::Converter version 2.150010",
"license" : [
"perl_5"
],
@@ -80,13 +80,13 @@
"version" : "1.77",
"x_Dist_Zilla" : {
"perl" : {
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+ "version" : "5.034000"
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"name" : "SkipEUtilsData",
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+ "version" : "6.025"
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{
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@@ -102,42 +102,42 @@
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+ "version" : "6.025"
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"name" : "@BioPerl/@Filter/PruneCruft",
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"name" : "@BioPerl/@Filter/ManifestSkip",
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"class" : "Dist::Zilla::Plugin::MetaYAML",
"name" : "@BioPerl/@Filter/MetaYAML",
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"name" : "@BioPerl/@Filter/License",
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"name" : "@BioPerl/@Filter/ShareDir",
- "version" : "6.012"
+ "version" : "6.025"
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{
"class" : "Dist::Zilla::Plugin::MakeMaker",
@@ -147,47 +147,47 @@
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+ "version" : "6.025"
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"name" : "@BioPerl/@Filter/ConfirmRelease",
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{
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"name" : "@BioPerl/@Filter/UploadToCPAN",
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- "version" : "6.012"
+ "version" : "6.025"
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@@ -376,12 +376,12 @@
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@@ -392,12 +392,12 @@
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@@ -414,19 +414,20 @@
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+ "git_version" : "2.37.2",
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"add_files_in" : [],
- "commit_msg" : "v%v%n%n%c"
+ "commit_msg" : "v%V%n%n%c",
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},
"Dist::Zilla::Role::Git::DirtyFiles" : {
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@@ -437,7 +438,7 @@
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"Dist::Zilla::Role::Git::Repo" : {
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@@ -445,7 +446,7 @@
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@@ -459,7 +460,7 @@
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@@ -467,7 +468,7 @@
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+ "version" : "6.025"
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@@ -541,10 +542,11 @@
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- "x_generated_by_perl" : "v5.28.1",
- "x_serialization_backend" : "Cpanel::JSON::XS version 4.09"
+ "x_generated_by_perl" : "v5.34.0",
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+ "x_spdx_expression" : "Artistic-1.0-Perl OR GPL-1.0-or-later"
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diff --git a/META.yml b/META.yml
index ec0ab10..bf6e1d6 100644
--- a/META.yml
+++ b/META.yml
@@ -10,7 +10,7 @@ build_requires:
configure_requires:
ExtUtils::MakeMaker: '0'
dynamic_config: 0
-generated_by: 'Dist::Zilla version 6.012, CPAN::Meta::Converter version 2.150010'
+generated_by: 'Dist::Zilla version 6.025, CPAN::Meta::Converter version 2.150010'
license: perl
meta-spec:
url: http://module-build.sourceforge.net/META-spec-v1.4.html
@@ -47,12 +47,12 @@ resources:
version: '1.77'
x_Dist_Zilla:
perl:
- version: '5.028001'
+ version: '5.034000'
plugins:
-
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name: SkipEUtilsData
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config:
@@ -65,74 +65,74 @@ x_Dist_Zilla:
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allow_dirty_match: []
changelog: Changes
Dist::Zilla::Role::Git::Repo:
- git_version: 2.20.1
+ git_version: 2.37.2
repo_root: .
Dist::Zilla::Role::Git::StringFormatter:
time_zone: local
name: '@BioPerl/Git::Commit'
- version: '2.045'
+ version: '2.048'
-
class: Dist::Zilla::Plugin::Git::Tag
config:
@@ -342,12 +343,12 @@ x_Dist_Zilla:
tag_format: '%N-v%v'
tag_message: '%N-v%v'
Dist::Zilla::Role::Git::Repo:
- git_version: 2.20.1
+ git_version: 2.37.2
repo_root: .
Dist::Zilla::Role::Git::StringFormatter:
time_zone: local
name: '@BioPerl/Git::Tag'
- version: '2.045'
+ version: '2.048'
-
class: Dist::Zilla::Plugin::Prereqs
config:
@@ -355,55 +356,56 @@ x_Dist_Zilla:
phase: runtime
type: requires
name: Requires
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::AutoPrereqs
name: AutoPrereqs
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':InstallModules'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':IncModules'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':TestFiles'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':ExtraTestFiles'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':ExecFiles'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':PerlExecFiles'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':ShareFiles'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':MainModule'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':AllFiles'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':NoFiles'
- version: '6.012'
+ version: '6.025'
zilla:
class: Dist::Zilla::Dist::Builder
config:
is_trial: '0'
- version: '6.012'
-x_generated_by_perl: v5.28.1
+ version: '6.025'
+x_generated_by_perl: v5.34.0
x_serialization_backend: 'YAML::Tiny version 1.73'
+x_spdx_expression: 'Artistic-1.0-Perl OR GPL-1.0-or-later'
diff --git a/Makefile.PL b/Makefile.PL
index b3e178f..bfaf480 100644
--- a/Makefile.PL
+++ b/Makefile.PL
@@ -1,4 +1,4 @@
-# This file was automatically generated by Dist::Zilla::Plugin::MakeMaker v6.012.
+# This file was automatically generated by Dist::Zilla::Plugin::MakeMaker v6.025.
use strict;
use warnings;
diff --git a/debian/changelog b/debian/changelog
index c027c49..7e4cb04 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+libbio-eutilities-perl (1.77+git20200309.1.6bd1781-1) UNRELEASED; urgency=low
+
+ * New upstream snapshot.
+
+ -- Debian Janitor <janitor@jelmer.uk> Sun, 16 Oct 2022 03:48:22 -0000
+
libbio-eutilities-perl (1.77-2) unstable; urgency=medium
[ Debian Janitor ]
diff --git a/debian/patches/autopkgtest-compile.patch b/debian/patches/autopkgtest-compile.patch
index b706461..74dfc0f 100644
--- a/debian/patches/autopkgtest-compile.patch
+++ b/debian/patches/autopkgtest-compile.patch
@@ -4,9 +4,11 @@ Author: Carnë Draug <carandraug+dev@gmail.com>
Reviewed-by: gregor herrmann <gregoa@debian.org>
Last-Update: 2020-01-29
---- a/t/00-compile.t
-+++ b/t/00-compile.t
-@@ -30,9 +30,10 @@
+Index: libbio-eutilities-perl.git/t/00-compile.t
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/00-compile.t
++++ libbio-eutilities-perl.git/t/00-compile.t
+@@ -30,9 +30,10 @@ my @module_files = (
'Bio/Tools/EUtilities/Summary/ItemContainerI.pm'
);
diff --git a/debian/patches/inline-DTDs-on-testsuite b/debian/patches/inline-DTDs-on-testsuite
index 8ce3ae1..1a19e7f 100644
--- a/debian/patches/inline-DTDs-on-testsuite
+++ b/debian/patches/inline-DTDs-on-testsuite
@@ -3,8 +3,10 @@ Description: inline the DTDs in the xml files to prevent network access
Author: Carnë Draug <carandraug+dev@gmail.com>
Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
---- a/t/data/eutils/egquery.xml
-+++ b/t/data/eutils/egquery.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/egquery.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/egquery.xml
++++ libbio-eutilities-perl.git/t/data/eutils/egquery.xml
@@ -1,11 +1,21 @@
-<?xml version="1.0"?>
-<!DOCTYPE Result PUBLIC "-//NLM//DTD eSearchResult, January 2004//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/egquery.dtd">
@@ -31,8 +33,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<Result>
<Term>Notch AND Mus musculus</Term>
---- a/t/data/eutils/einfo.xml
-+++ b/t/data/eutils/einfo.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/einfo.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/einfo.xml
++++ libbio-eutilities-perl.git/t/data/eutils/einfo.xml
@@ -1,5 +1,35 @@
-<?xml version="1.0"?>
-<!DOCTYPE eInfoResult PUBLIC "-//NLM//DTD eInfoResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eInfo_020511.dtd">
@@ -71,8 +75,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eInfoResult>
<DbInfo>
<DbName>pubmed</DbName>
---- a/t/data/eutils/einfo_dbs.xml
-+++ b/t/data/eutils/einfo_dbs.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/einfo_dbs.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/einfo_dbs.xml
++++ libbio-eutilities-perl.git/t/data/eutils/einfo_dbs.xml
@@ -1,5 +1,35 @@
-<?xml version="1.0"?>
-<!DOCTYPE eInfoResult PUBLIC "-//NLM//DTD eInfoResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eInfo_020511.dtd">
@@ -111,8 +117,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eInfoResult>
<DbList>
<DbName>pubmed</DbName>
---- a/t/data/eutils/elink_acheck.xml
-+++ b/t/data/eutils/elink_acheck.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/elink_acheck.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/elink_acheck.xml
++++ libbio-eutilities-perl.git/t/data/eutils/elink_acheck.xml
@@ -1,5 +1,34 @@
-<?xml version="1.0"?>
-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
@@ -150,8 +158,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eLinkResult>
<LinkSet>
<DbFrom>protein</DbFrom>
---- a/t/data/eutils/elink_acheck_corr.xml
-+++ b/t/data/eutils/elink_acheck_corr.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/elink_acheck_corr.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/elink_acheck_corr.xml
++++ libbio-eutilities-perl.git/t/data/eutils/elink_acheck_corr.xml
@@ -1,5 +1,34 @@
-<?xml version="1.0"?>
-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
@@ -189,8 +199,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eLinkResult>
<LinkSet>
<DbFrom>protein</DbFrom>
---- a/t/data/eutils/elink_dball.xml
-+++ b/t/data/eutils/elink_dball.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/elink_dball.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/elink_dball.xml
++++ libbio-eutilities-perl.git/t/data/eutils/elink_dball.xml
@@ -1,5 +1,34 @@
-<?xml version="1.0"?>
-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
@@ -228,8 +240,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eLinkResult>
<LinkSet>
<DbFrom>protein</DbFrom>
---- a/t/data/eutils/elink_lcheck.xml
-+++ b/t/data/eutils/elink_lcheck.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/elink_lcheck.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/elink_lcheck.xml
++++ libbio-eutilities-perl.git/t/data/eutils/elink_lcheck.xml
@@ -1,5 +1,34 @@
-<?xml version="1.0"?>
-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
@@ -267,8 +281,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eLinkResult>
<LinkSet>
<DbFrom>protein</DbFrom>
---- a/t/data/eutils/elink_lcheck_corr.xml
-+++ b/t/data/eutils/elink_lcheck_corr.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/elink_lcheck_corr.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/elink_lcheck_corr.xml
++++ libbio-eutilities-perl.git/t/data/eutils/elink_lcheck_corr.xml
@@ -1,5 +1,34 @@
-<?xml version="1.0"?>
-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
@@ -306,8 +322,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eLinkResult>
<LinkSet>
<DbFrom>protein</DbFrom>
---- a/t/data/eutils/elink_llinks.xml
-+++ b/t/data/eutils/elink_llinks.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/elink_llinks.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/elink_llinks.xml
++++ libbio-eutilities-perl.git/t/data/eutils/elink_llinks.xml
@@ -1,5 +1,34 @@
-<?xml version="1.0"?>
-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
@@ -345,8 +363,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eLinkResult>
<LinkSet>
<DbFrom>protein</DbFrom>
---- a/t/data/eutils/elink_llinks_corr.xml
-+++ b/t/data/eutils/elink_llinks_corr.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/elink_llinks_corr.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/elink_llinks_corr.xml
++++ libbio-eutilities-perl.git/t/data/eutils/elink_llinks_corr.xml
@@ -1,5 +1,34 @@
-<?xml version="1.0"?>
-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
@@ -384,8 +404,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eLinkResult>
<LinkSet>
<DbFrom>protein</DbFrom>
---- a/t/data/eutils/elink_multidb.xml
-+++ b/t/data/eutils/elink_multidb.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/elink_multidb.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/elink_multidb.xml
++++ libbio-eutilities-perl.git/t/data/eutils/elink_multidb.xml
@@ -1,5 +1,34 @@
-<?xml version="1.0"?>
-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
@@ -423,8 +445,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eLinkResult>
<LinkSet>
<DbFrom>protein</DbFrom>
---- a/t/data/eutils/elink_multidb_corr.xml
-+++ b/t/data/eutils/elink_multidb_corr.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/elink_multidb_corr.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/elink_multidb_corr.xml
++++ libbio-eutilities-perl.git/t/data/eutils/elink_multidb_corr.xml
@@ -1,5 +1,34 @@
-<?xml version="1.0"?>
-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
@@ -462,8 +486,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eLinkResult>
<LinkSet>
<DbFrom>protein</DbFrom>
---- a/t/data/eutils/elink_ncheck.xml
-+++ b/t/data/eutils/elink_ncheck.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/elink_ncheck.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/elink_ncheck.xml
++++ libbio-eutilities-perl.git/t/data/eutils/elink_ncheck.xml
@@ -1,5 +1,34 @@
-<?xml version="1.0"?>
-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
@@ -501,8 +527,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eLinkResult>
<LinkSet>
<DbFrom>protein</DbFrom>
---- a/t/data/eutils/elink_ncheck_corr.xml
-+++ b/t/data/eutils/elink_ncheck_corr.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/elink_ncheck_corr.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/elink_ncheck_corr.xml
++++ libbio-eutilities-perl.git/t/data/eutils/elink_ncheck_corr.xml
@@ -1,5 +1,34 @@
-<?xml version="1.0"?>
-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
@@ -540,8 +568,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eLinkResult>
<LinkSet>
<DbFrom>protein</DbFrom>
---- a/t/data/eutils/elink_neighbor.xml
-+++ b/t/data/eutils/elink_neighbor.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/elink_neighbor.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/elink_neighbor.xml
++++ libbio-eutilities-perl.git/t/data/eutils/elink_neighbor.xml
@@ -1,5 +1,34 @@
-<?xml version="1.0"?>
-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
@@ -579,8 +609,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eLinkResult>
<LinkSet>
<DbFrom>protein</DbFrom>
---- a/t/data/eutils/elink_neighbor_corr.xml
-+++ b/t/data/eutils/elink_neighbor_corr.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/elink_neighbor_corr.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/elink_neighbor_corr.xml
++++ libbio-eutilities-perl.git/t/data/eutils/elink_neighbor_corr.xml
@@ -1,5 +1,34 @@
-<?xml version="1.0"?>
-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
@@ -618,8 +650,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eLinkResult>
<LinkSet>
<DbFrom>protein</DbFrom>
---- a/t/data/eutils/elink_nhist.xml
-+++ b/t/data/eutils/elink_nhist.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/elink_nhist.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/elink_nhist.xml
++++ libbio-eutilities-perl.git/t/data/eutils/elink_nhist.xml
@@ -1,5 +1,34 @@
-<?xml version="1.0"?>
-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
@@ -657,8 +691,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eLinkResult>
<LinkSet>
<DbFrom>protein</DbFrom>
---- a/t/data/eutils/elink_nhist_corr.xml
-+++ b/t/data/eutils/elink_nhist_corr.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/elink_nhist_corr.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/elink_nhist_corr.xml
++++ libbio-eutilities-perl.git/t/data/eutils/elink_nhist_corr.xml
@@ -1,5 +1,34 @@
-<?xml version="1.0"?>
-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
@@ -696,8 +732,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eLinkResult>
<LinkSet>
<DbFrom>protein</DbFrom>
---- a/t/data/eutils/elink_scores.xml
-+++ b/t/data/eutils/elink_scores.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/elink_scores.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/elink_scores.xml
++++ libbio-eutilities-perl.git/t/data/eutils/elink_scores.xml
@@ -1,5 +1,34 @@
-<?xml version="1.0"?>
-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
@@ -735,8 +773,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eLinkResult>
<LinkSet>
<DbFrom>protein</DbFrom>
---- a/t/data/eutils/epost.xml
-+++ b/t/data/eutils/epost.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/epost.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/epost.xml
++++ libbio-eutilities-perl.git/t/data/eutils/epost.xml
@@ -1,5 +1,15 @@
-<?xml version="1.0"?>
-<!DOCTYPE ePostResult PUBLIC "-//NLM//DTD ePostResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/ePost_020511.dtd">
@@ -755,8 +795,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<ePostResult>
<QueryKey>1</QueryKey>
<WebEnv>0rACq8_iP87yHkqqm0SBaU38LzWLHIUd-J4QozMr31bh_XO5KAxLr5Q0o2e@03ED1E11941B69F1_0100SID</WebEnv>
---- a/t/data/eutils/esearch1.xml
-+++ b/t/data/eutils/esearch1.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/esearch1.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/esearch1.xml
++++ libbio-eutilities-perl.git/t/data/eutils/esearch1.xml
@@ -1,5 +1,36 @@
-<?xml version="1.0"?>
-<!DOCTYPE eSearchResult PUBLIC "-//NLM//DTD eSearchResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSearch_020511.dtd">
@@ -796,8 +838,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eSearchResult>
<Count>534</Count>
<RetMax>20</RetMax>
---- a/t/data/eutils/esearch2.xml
-+++ b/t/data/eutils/esearch2.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/esearch2.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/esearch2.xml
++++ libbio-eutilities-perl.git/t/data/eutils/esearch2.xml
@@ -1,5 +1,36 @@
-<?xml version="1.0"?>
-<!DOCTYPE eSearchResult PUBLIC "-//NLM//DTD eSearchResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSearch_020511.dtd">
@@ -837,8 +881,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eSearchResult>
<Count>534</Count>
<RetMax>20</RetMax>
---- a/t/data/eutils/espell.xml
-+++ b/t/data/eutils/espell.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/espell.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/espell.xml
++++ libbio-eutilities-perl.git/t/data/eutils/espell.xml
@@ -1,5 +1,17 @@
-<?xml version="1.0"?>
-<!DOCTYPE eSpellResult PUBLIC "-//NLM//DTD eSpellResult, 23 November 2004//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSpell.dtd">
@@ -859,8 +905,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eSpellResult>
<Database>pubmed</Database>
<Query>Netch AND Mus musclus</Query>
---- a/t/data/eutils/esummary1.xml
-+++ b/t/data/eutils/esummary1.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/esummary1.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/esummary1.xml
++++ libbio-eutilities-perl.git/t/data/eutils/esummary1.xml
@@ -1,5 +1,16 @@
-<?xml version="1.0" encoding="ISO-8859-1"?>
-<!DOCTYPE eSummaryResult PUBLIC "-//NLM//DTD eSummaryResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSummary_041029.dtd">
@@ -880,8 +928,10 @@ Last-Update: Thu, 26 Jan 2017 18:12:41 +0000
<eSummaryResult>
<DocSum>
---- a/t/data/eutils/esummary2.xml
-+++ b/t/data/eutils/esummary2.xml
+Index: libbio-eutilities-perl.git/t/data/eutils/esummary2.xml
+===================================================================
+--- libbio-eutilities-perl.git.orig/t/data/eutils/esummary2.xml
++++ libbio-eutilities-perl.git/t/data/eutils/esummary2.xml
@@ -1,5 +1,16 @@
-<?xml version="1.0"?>
-<!DOCTYPE eSummaryResult PUBLIC "-//NLM//DTD eSummaryResult, 29 October 2004//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSummary_041029.dtd">
Debdiff
File lists identical (after any substitutions)
No differences were encountered in the control files