New Upstream Snapshot - libbio-tools-run-remoteblast-perl
Ready changes
Summary
Merged new upstream version: 1.7.3+git20210228.1.0490f24 (was: 1.7.3).
Resulting package
Built on 2023-01-04T04:13 (took 5m57s)
The resulting binary packages can be installed (if you have the apt repository enabled) by running one of:
apt install -t fresh-snapshots libbio-tools-run-remoteblast-perl
Lintian Result
- libbio-tools-run-remoteblast-perl_1.7.3+git20210228.1.0490f24-1~jan+nus1.dsc
- libbio-tools-run-remoteblast-perl_1.7.3+git20210228.1.0490f24-1~jan+nus1_all.deb
- libbio-tools-run-remoteblast-perl_1.7.3+git20210228.1.0490f24-1~jan+nus1_amd64.buildinfo
- libbio-tools-run-remoteblast-perl_1.7.3+git20210228.1.0490f24-1~jan+nus1_amd64.changes
Diff
diff --git a/Changes b/Changes
index 65a3193..074e3ce 100644
--- a/Changes
+++ b/Changes
@@ -1,5 +1,7 @@
Summary of important user-visible changes for Bio-Tools-Run-RemoteBlast
-----------------------------------------------------------------------
+1.7.3 2023-01-04 04:11:57+00:00 UTC
+
1.7.3 2018-09-24 23:45:11-05:00 America/Chicago
* First release after split from bioperl-live.
diff --git a/LICENSE b/LICENSE
index 247301d..b7649cf 100644
--- a/LICENSE
+++ b/LICENSE
@@ -1,4 +1,4 @@
-This software is copyright (c) 2018 by Jason Stajich <jason@bioperl.org>.
+This software is copyright (c) 2023 by Jason Stajich <jason@bioperl.org>.
This is free software; you can redistribute it and/or modify it under
the same terms as the Perl 5 programming language system itself.
@@ -12,7 +12,7 @@ b) the "Artistic License"
--- The GNU General Public License, Version 1, February 1989 ---
-This software is Copyright (c) 2018 by Jason Stajich <jason@bioperl.org>.
+This software is Copyright (c) 2023 by Jason Stajich <jason@bioperl.org>.
This is free software, licensed under:
@@ -272,7 +272,7 @@ That's all there is to it!
--- The Artistic License 1.0 ---
-This software is Copyright (c) 2018 by Jason Stajich <jason@bioperl.org>.
+This software is Copyright (c) 2023 by Jason Stajich <jason@bioperl.org>.
This is free software, licensed under:
@@ -292,21 +292,21 @@ Definitions:
- "Package" refers to the collection of files distributed by the Copyright
Holder, and derivatives of that collection of files created through
- textual modification.
+ textual modification.
- "Standard Version" refers to such a Package if it has not been modified,
or has been modified in accordance with the wishes of the Copyright
- Holder.
+ Holder.
- "Copyright Holder" is whoever is named in the copyright or copyrights for
- the package.
+ the package.
- "You" is you, if you're thinking about copying or distributing this Package.
- "Reasonable copying fee" is whatever you can justify on the basis of media
cost, duplication charges, time of people involved, and so on. (You will
not be required to justify it to the Copyright Holder, but only to the
- computing community at large as a market that must bear the fee.)
+ computing community at large as a market that must bear the fee.)
- "Freely Available" means that no fee is charged for the item itself, though
there may be fees involved in handling the item. It also means that
recipients of the item may redistribute it under the same conditions they
- received it.
+ received it.
1. You may make and give away verbatim copies of the source form of the
Standard Version of this Package without restriction, provided that you
@@ -373,7 +373,7 @@ products derived from this software without specific prior written permission.
9. THIS PACKAGE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR IMPLIED
WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF
-MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE.
+MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
The End
diff --git a/MANIFEST b/MANIFEST
index f4a5c05..12409a9 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -1,4 +1,4 @@
-# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.010.
+# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.029.
Changes
LICENSE
MANIFEST
diff --git a/META.json b/META.json
index 1368c95..a79b023 100644
--- a/META.json
+++ b/META.json
@@ -4,7 +4,7 @@
"Jason Stajich <jason@bioperl.org>"
],
"dynamic_config" : 0,
- "generated_by" : "Dist::Zilla version 6.010, CPAN::Meta::Converter version 2.150010",
+ "generated_by" : "Dist::Zilla version 6.029, CPAN::Meta::Converter version 2.150010",
"license" : [
"perl_5"
],
@@ -71,7 +71,7 @@
"version" : "1.7.3",
"x_Dist_Zilla" : {
"perl" : {
- "version" : "5.026000"
+ "version" : "5.036000"
},
"plugins" : [
{
@@ -88,42 +88,42 @@
}
},
"name" : "@BioPerl/@Filter/GatherDir",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::PruneCruft",
"name" : "@BioPerl/@Filter/PruneCruft",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::ManifestSkip",
"name" : "@BioPerl/@Filter/ManifestSkip",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::MetaYAML",
"name" : "@BioPerl/@Filter/MetaYAML",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::License",
"name" : "@BioPerl/@Filter/License",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::ExtraTests",
"name" : "@BioPerl/@Filter/ExtraTests",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::ExecDir",
"name" : "@BioPerl/@Filter/ExecDir",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::ShareDir",
"name" : "@BioPerl/@Filter/ShareDir",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::MakeMaker",
@@ -133,47 +133,47 @@
}
},
"name" : "@BioPerl/@Filter/MakeMaker",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::Manifest",
"name" : "@BioPerl/@Filter/Manifest",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::TestRelease",
"name" : "@BioPerl/@Filter/TestRelease",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::ConfirmRelease",
"name" : "@BioPerl/@Filter/ConfirmRelease",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::UploadToCPAN",
"name" : "@BioPerl/@Filter/UploadToCPAN",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::MetaConfig",
"name" : "@BioPerl/MetaConfig",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::MetaJSON",
"name" : "@BioPerl/MetaJSON",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::PkgVersion",
"name" : "@BioPerl/PkgVersion",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::PodSyntaxTests",
"name" : "@BioPerl/PodSyntaxTests",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::Test::NoTabs",
@@ -211,7 +211,7 @@
}
},
"name" : "@BioPerl/Test::Compile",
- "version" : "2.057"
+ "version" : "2.058"
},
{
"class" : "Dist::Zilla::Plugin::MojibakeTests",
@@ -221,7 +221,7 @@
{
"class" : "Dist::Zilla::Plugin::AutoPrereqs",
"name" : "@BioPerl/AutoPrereqs",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::AutoMetaResources",
@@ -231,17 +231,17 @@
{
"class" : "Dist::Zilla::Plugin::MetaResources",
"name" : "@BioPerl/MetaResources",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::Encoding",
"name" : "@BioPerl/Encoding",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::NextRelease",
"name" : "@BioPerl/NextRelease",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::Git::Check",
@@ -258,19 +258,20 @@
"changelog" : "Changes"
},
"Dist::Zilla::Role::Git::Repo" : {
- "git_version" : "2.14.1",
+ "git_version" : "2.39.0",
"repo_root" : "."
}
},
"name" : "@BioPerl/Git::Check",
- "version" : "2.042"
+ "version" : "2.048"
},
{
"class" : "Dist::Zilla::Plugin::Git::Commit",
"config" : {
"Dist::Zilla::Plugin::Git::Commit" : {
"add_files_in" : [],
- "commit_msg" : "v%v%n%n%c"
+ "commit_msg" : "v%V%n%n%c",
+ "signoff" : 0
},
"Dist::Zilla::Role::Git::DirtyFiles" : {
"allow_dirty" : [
@@ -281,7 +282,7 @@
"changelog" : "Changes"
},
"Dist::Zilla::Role::Git::Repo" : {
- "git_version" : "2.14.1",
+ "git_version" : "2.39.0",
"repo_root" : "."
},
"Dist::Zilla::Role::Git::StringFormatter" : {
@@ -289,7 +290,7 @@
}
},
"name" : "@BioPerl/Git::Commit",
- "version" : "2.042"
+ "version" : "2.048"
},
{
"class" : "Dist::Zilla::Plugin::Git::Tag",
@@ -303,7 +304,7 @@
"tag_message" : "%N-v%v"
},
"Dist::Zilla::Role::Git::Repo" : {
- "git_version" : "2.14.1",
+ "git_version" : "2.39.0",
"repo_root" : "."
},
"Dist::Zilla::Role::Git::StringFormatter" : {
@@ -311,57 +312,57 @@
}
},
"name" : "@BioPerl/Git::Tag",
- "version" : "2.042"
+ "version" : "2.048"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":InstallModules",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":IncModules",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":TestFiles",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":ExtraTestFiles",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":ExecFiles",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":PerlExecFiles",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":ShareFiles",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":MainModule",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":AllFiles",
- "version" : "6.010"
+ "version" : "6.029"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":NoFiles",
- "version" : "6.010"
+ "version" : "6.029"
}
],
"zilla" : {
@@ -369,9 +370,11 @@
"config" : {
"is_trial" : 0
},
- "version" : "6.010"
+ "version" : "6.029"
}
},
- "x_serialization_backend" : "Cpanel::JSON::XS version 3.0239"
+ "x_generated_by_perl" : "v5.36.0",
+ "x_serialization_backend" : "Cpanel::JSON::XS version 4.32",
+ "x_spdx_expression" : "Artistic-1.0-Perl OR GPL-1.0-or-later"
}
diff --git a/META.yml b/META.yml
index 97e08ac..ea7bd49 100644
--- a/META.yml
+++ b/META.yml
@@ -11,7 +11,7 @@ build_requires:
configure_requires:
ExtUtils::MakeMaker: '0'
dynamic_config: 0
-generated_by: 'Dist::Zilla version 6.010, CPAN::Meta::Converter version 2.150010'
+generated_by: 'Dist::Zilla version 6.029, CPAN::Meta::Converter version 2.150010'
license: perl
meta-spec:
url: http://module-build.sourceforge.net/META-spec-v1.4.html
@@ -39,7 +39,7 @@ resources:
version: 1.7.3
x_Dist_Zilla:
perl:
- version: '5.026000'
+ version: '5.036000'
plugins:
-
class: Dist::Zilla::Plugin::GatherDir
@@ -53,74 +53,74 @@ x_Dist_Zilla:
prune_directory: []
root: .
name: '@BioPerl/@Filter/GatherDir'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::PruneCruft
name: '@BioPerl/@Filter/PruneCruft'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::ManifestSkip
name: '@BioPerl/@Filter/ManifestSkip'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::MetaYAML
name: '@BioPerl/@Filter/MetaYAML'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::License
name: '@BioPerl/@Filter/License'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::ExtraTests
name: '@BioPerl/@Filter/ExtraTests'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::ExecDir
name: '@BioPerl/@Filter/ExecDir'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::ShareDir
name: '@BioPerl/@Filter/ShareDir'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::MakeMaker
config:
Dist::Zilla::Role::TestRunner:
default_jobs: 1
name: '@BioPerl/@Filter/MakeMaker'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::Manifest
name: '@BioPerl/@Filter/Manifest'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::TestRelease
name: '@BioPerl/@Filter/TestRelease'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::ConfirmRelease
name: '@BioPerl/@Filter/ConfirmRelease'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::UploadToCPAN
name: '@BioPerl/@Filter/UploadToCPAN'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::MetaConfig
name: '@BioPerl/MetaConfig'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::MetaJSON
name: '@BioPerl/MetaJSON'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::PkgVersion
name: '@BioPerl/PkgVersion'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::PodSyntaxTests
name: '@BioPerl/PodSyntaxTests'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::Test::NoTabs
config:
@@ -136,7 +136,7 @@ x_Dist_Zilla:
class: Dist::Zilla::Plugin::Test::Compile
config:
Dist::Zilla::Plugin::Test::Compile:
- bail_out_on_fail: '0'
+ bail_out_on_fail: 0
fail_on_warning: author
fake_home: 0
filename: t/00-compile.t
@@ -149,7 +149,7 @@ x_Dist_Zilla:
skips: []
switch: []
name: '@BioPerl/Test::Compile'
- version: '2.057'
+ version: '2.058'
-
class: Dist::Zilla::Plugin::MojibakeTests
name: '@BioPerl/MojibakeTests'
@@ -157,7 +157,7 @@ x_Dist_Zilla:
-
class: Dist::Zilla::Plugin::AutoPrereqs
name: '@BioPerl/AutoPrereqs'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::AutoMetaResources
name: '@BioPerl/AutoMetaResources'
@@ -165,15 +165,15 @@ x_Dist_Zilla:
-
class: Dist::Zilla::Plugin::MetaResources
name: '@BioPerl/MetaResources'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::Encoding
name: '@BioPerl/Encoding'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::NextRelease
name: '@BioPerl/NextRelease'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::Git::Check
config:
@@ -186,16 +186,17 @@ x_Dist_Zilla:
allow_dirty_match: []
changelog: Changes
Dist::Zilla::Role::Git::Repo:
- git_version: 2.14.1
+ git_version: 2.39.0
repo_root: .
name: '@BioPerl/Git::Check'
- version: '2.042'
+ version: '2.048'
-
class: Dist::Zilla::Plugin::Git::Commit
config:
Dist::Zilla::Plugin::Git::Commit:
add_files_in: []
- commit_msg: v%v%n%n%c
+ commit_msg: v%V%n%n%c
+ signoff: 0
Dist::Zilla::Role::Git::DirtyFiles:
allow_dirty:
- Changes
@@ -203,12 +204,12 @@ x_Dist_Zilla:
allow_dirty_match: []
changelog: Changes
Dist::Zilla::Role::Git::Repo:
- git_version: 2.14.1
+ git_version: 2.39.0
repo_root: .
Dist::Zilla::Role::Git::StringFormatter:
time_zone: local
name: '@BioPerl/Git::Commit'
- version: '2.042'
+ version: '2.048'
-
class: Dist::Zilla::Plugin::Git::Tag
config:
@@ -220,55 +221,57 @@ x_Dist_Zilla:
tag_format: '%N-v%v'
tag_message: '%N-v%v'
Dist::Zilla::Role::Git::Repo:
- git_version: 2.14.1
+ git_version: 2.39.0
repo_root: .
Dist::Zilla::Role::Git::StringFormatter:
time_zone: local
name: '@BioPerl/Git::Tag'
- version: '2.042'
+ version: '2.048'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':InstallModules'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':IncModules'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':TestFiles'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':ExtraTestFiles'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':ExecFiles'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':PerlExecFiles'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':ShareFiles'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':MainModule'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':AllFiles'
- version: '6.010'
+ version: '6.029'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':NoFiles'
- version: '6.010'
+ version: '6.029'
zilla:
class: Dist::Zilla::Dist::Builder
config:
- is_trial: '0'
- version: '6.010'
-x_serialization_backend: 'YAML::Tiny version 1.70'
+ is_trial: 0
+ version: '6.029'
+x_generated_by_perl: v5.36.0
+x_serialization_backend: 'YAML::Tiny version 1.73'
+x_spdx_expression: 'Artistic-1.0-Perl OR GPL-1.0-or-later'
diff --git a/Makefile.PL b/Makefile.PL
index e2578b1..35b2ab8 100644
--- a/Makefile.PL
+++ b/Makefile.PL
@@ -1,4 +1,4 @@
-# This file was automatically generated by Dist::Zilla::Plugin::MakeMaker v6.010.
+# This file was automatically generated by Dist::Zilla::Plugin::MakeMaker v6.029.
use strict;
use warnings;
diff --git a/debian/changelog b/debian/changelog
index 5781e4d..5eb646a 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+libbio-tools-run-remoteblast-perl (1.7.3+git20210228.1.0490f24-1) UNRELEASED; urgency=low
+
+ * New upstream snapshot.
+
+ -- Debian Janitor <janitor@jelmer.uk> Wed, 04 Jan 2023 04:12:00 -0000
+
libbio-tools-run-remoteblast-perl (1.7.3-3) unstable; urgency=medium
* Team upload.
diff --git a/lib/Bio/Tools/Run/RemoteBlast.pm b/lib/Bio/Tools/Run/RemoteBlast.pm
index 5a02e9e..fe49411 100644
--- a/lib/Bio/Tools/Run/RemoteBlast.pm
+++ b/lib/Bio/Tools/Run/RemoteBlast.pm
@@ -71,7 +71,7 @@ via HTTP
$factory->remove_rid($rid);
}
print STDERR "." if ( $v > 0 );
- sleep 5;
+ sleep 10;
} else {
my $result = $rc->next_result();
#save the output
diff --git a/t/00-compile.t b/t/00-compile.t
index 71519b8..0247f20 100644
--- a/t/00-compile.t
+++ b/t/00-compile.t
@@ -2,7 +2,7 @@ use 5.006;
use strict;
use warnings;
-# this test was generated with Dist::Zilla::Plugin::Test::Compile 2.057
+# this test was generated with Dist::Zilla::Plugin::Test::Compile 2.058
use Test::More;
@@ -62,6 +62,9 @@ foreach my $file (@scripts)
close $fh and skip("$file isn't perl", 1) unless $line =~ /^#!\s*(?:\S*perl\S*)((?:\s+-\w*)*)(?:\s*#.*)?$/;
@switches = (@switches, split(' ', $1)) if $1;
+ close $fh and skip("$file uses -T; not testable with PERL5LIB", 1)
+ if grep { $_ eq '-T' } @switches and $ENV{PERL5LIB};
+
my $stderr = IO::Handle->new;
diag('Running: ', join(', ', map { my $str = $_; $str =~ s/'/\\'/g; q{'} . $str . q{'} }
Debdiff
File lists identical (after any substitutions)
No differences were encountered in the control files