Lintian Fixes - conservation-code

Ready changes

Merge these changes:

git pull https://janitor.debian.net/git/conservation-code lintian-fixes

Summary

Diff

=== modified file 'debian/changelog'
--- a/debian/changelog	2018-10-15 13:36:19 +0000
+++ b/debian/changelog	2019-12-12 08:22:26 +0000
@@ -1,3 +1,14 @@
+conservation-code (20110309.0-8) UNRELEASED; urgency=medium
+
+  * Trim trailing whitespace.
+  * Use secure URI in Homepage field.
+  * Bump debhelper from old 11 to 12.
+  * Set debhelper-compat version in Build-Depends.
+  * Remove obsolete fields Contact, Name from debian/upstream/metadata
+    (already present in machine-readable debian/copyright).
+
+ -- Debian Janitor <janitor@jelmer.uk>  Thu, 12 Dec 2019 08:20:53 +0000
+
 conservation-code (20110309.0-7) unstable; urgency=medium
 
   * debhelper 11
@@ -25,10 +36,10 @@
   * upstream fix - to load identity matrix without error when no alignment
     matrix is found
   * add hardening
-  * allow-stderr for testsuite to allow test pass instead of fail when matrix 
+  * allow-stderr for testsuite to allow test pass instead of fail when matrix
     file is not found
   * verbose output in test + check distributions usage
-  * simplified debian/tests/non-default-params-test, but made more verbose 
+  * simplified debian/tests/non-default-params-test, but made more verbose
     debian/README.test
   * cme fix dpkg-copyright
 

=== removed file 'debian/compat'
--- a/debian/compat	2018-10-15 13:33:41 +0000
+++ b/debian/compat	1970-01-01 00:00:00 +0000
@@ -1,1 +0,0 @@
-11

=== modified file 'debian/control'
--- a/debian/control	2018-10-15 13:34:04 +0000
+++ b/debian/control	2019-12-12 08:22:02 +0000
@@ -4,13 +4,13 @@
            Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                dh-python,
                python
 Standards-Version: 4.2.1
 Vcs-Browser: https://salsa.debian.org/med-team/conservation-code
 Vcs-Git: https://salsa.debian.org/med-team/conservation-code.git
-Homepage: http://compbio.cs.princeton.edu/conservation/
+Homepage: https://compbio.cs.princeton.edu/conservation/
 
 Package: conservation-code
 Architecture: all

=== modified file 'debian/rules'
--- a/debian/rules	2017-10-06 13:29:57 +0000
+++ b/debian/rules	2019-12-12 08:21:01 +0000
@@ -52,4 +52,3 @@
 		xz --best *.tar; \
 	); \
 	mv $$t/*.tar.?z ./
-

=== modified file 'debian/upstream/metadata'
--- a/debian/upstream/metadata	2018-06-29 18:28:28 +0000
+++ b/debian/upstream/metadata	2019-12-12 08:22:26 +0000
@@ -1,20 +1,18 @@
-Name: conservation-code
-Contact: Tony Capra <http://compbio.cs.princeton.edu/conservation/>
 Reference:
- - Author: John A. Capra and Mona Singh
-   Title: Predicting functionally important residues from sequence conservation
-   Journal: Bioinformatics
-   Volume: 23
-   Number: 15
-   Pages: 1875-82
-   Year: 2007
-   URL: http://bioinformatics.oxfordjournals.org/content/23/15/1875.full
-   DOI: 10.1093/bioinformatics/btm270
-   PMID: 17519246
+- Author: John A. Capra and Mona Singh
+  Title: Predicting functionally important residues from sequence conservation
+  Journal: Bioinformatics
+  Volume: 23
+  Number: 15
+  Pages: 1875-82
+  Year: 2007
+  URL: http://bioinformatics.oxfordjournals.org/content/23/15/1875.full
+  DOI: 10.1093/bioinformatics/btm270
+  PMID: 17519246
 Registry:
- - Name: OMICtools
-   Entry: OMICS_06943
- - Name: SciCrunch
-   Entry: NA
- - Name: bio.tools
-   Entry: NA
+- Name: OMICtools
+  Entry: OMICS_06943
+- Name: SciCrunch
+  Entry: NA
+- Name: bio.tools
+  Entry: NA

Run locally

Try this locally (using the lintian-brush package):

debcheckout conservation-code
cd conservation-code
lintian-brush

More details

Full run details