diff --git a/Changes b/Changes
index 2869088..731a82e 100644
--- a/Changes
+++ b/Changes
@@ -1,6 +1,8 @@
 Summary of important user-visible changes for Bio-Tools-Phylo-PAML
 ------------------------------------------------------------------
 
+1.7.3     2022-03-20 17:31:24+00:00 UTC
+
 1.7.3     2018-07-01 13:35:29+01:00 Europe/London
   * Bio::Installer::PAML has been removed.  Not only did it no longer
     work, it was also unsecure.  Either install PAML via your system
diff --git a/LICENSE b/LICENSE
index 4ee5238..16839e1 100644
--- a/LICENSE
+++ b/LICENSE
@@ -1,4 +1,4 @@
-This software is copyright (c) 2018 by Aaron J Mackey <amackey@bioperl.org>, Jason Stajich <jason@bioperl.org>.
+This software is copyright (c) 2022 by Aaron J Mackey <amackey@bioperl.org>, Jason Stajich <jason@bioperl.org>.
 
 This is free software; you can redistribute it and/or modify it under
 the same terms as the Perl 5 programming language system itself.
@@ -12,7 +12,7 @@ b) the "Artistic License"
 
 --- The GNU General Public License, Version 1, February 1989 ---
 
-This software is Copyright (c) 2018 by Aaron J Mackey <amackey@bioperl.org>, Jason Stajich <jason@bioperl.org>.
+This software is Copyright (c) 2022 by Aaron J Mackey <amackey@bioperl.org>, Jason Stajich <jason@bioperl.org>.
 
 This is free software, licensed under:
 
@@ -272,7 +272,7 @@ That's all there is to it!
 
 --- The Artistic License 1.0 ---
 
-This software is Copyright (c) 2018 by Aaron J Mackey <amackey@bioperl.org>, Jason Stajich <jason@bioperl.org>.
+This software is Copyright (c) 2022 by Aaron J Mackey <amackey@bioperl.org>, Jason Stajich <jason@bioperl.org>.
 
 This is free software, licensed under:
 
@@ -292,21 +292,21 @@ Definitions:
 
   - "Package" refers to the collection of files distributed by the Copyright
     Holder, and derivatives of that collection of files created through
-    textual modification. 
+    textual modification.
   - "Standard Version" refers to such a Package if it has not been modified,
     or has been modified in accordance with the wishes of the Copyright
-    Holder. 
+    Holder.
   - "Copyright Holder" is whoever is named in the copyright or copyrights for
-    the package. 
+    the package.
   - "You" is you, if you're thinking about copying or distributing this Package.
   - "Reasonable copying fee" is whatever you can justify on the basis of media
     cost, duplication charges, time of people involved, and so on. (You will
     not be required to justify it to the Copyright Holder, but only to the
-    computing community at large as a market that must bear the fee.) 
+    computing community at large as a market that must bear the fee.)
   - "Freely Available" means that no fee is charged for the item itself, though
     there may be fees involved in handling the item. It also means that
     recipients of the item may redistribute it under the same conditions they
-    received it. 
+    received it.
 
 1. You may make and give away verbatim copies of the source form of the
 Standard Version of this Package without restriction, provided that you
@@ -373,7 +373,7 @@ products derived from this software without specific prior written permission.
 
 9. THIS PACKAGE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR IMPLIED
 WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF
-MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE.
+MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
 
 The End
 
diff --git a/MANIFEST b/MANIFEST
index 6b1f6bf..95a1535 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -1,4 +1,4 @@
-# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.012.
+# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.024.
 Changes
 LICENSE
 MANIFEST
diff --git a/META.json b/META.json
index 0a788d5..e76f0b2 100644
--- a/META.json
+++ b/META.json
@@ -5,7 +5,7 @@
       "Jason Stajich <jason@bioperl.org>"
    ],
    "dynamic_config" : 0,
-   "generated_by" : "Dist::Zilla version 6.012, CPAN::Meta::Converter version 2.150010",
+   "generated_by" : "Dist::Zilla version 6.024, CPAN::Meta::Converter version 2.150010",
    "license" : [
       "perl_5"
    ],
@@ -86,7 +86,7 @@
    "version" : "1.7.3",
    "x_Dist_Zilla" : {
       "perl" : {
-         "version" : "5.026002"
+         "version" : "5.034000"
       },
       "plugins" : [
          {
@@ -103,42 +103,42 @@
                }
             },
             "name" : "@BioPerl/@Filter/GatherDir",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::PruneCruft",
             "name" : "@BioPerl/@Filter/PruneCruft",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::ManifestSkip",
             "name" : "@BioPerl/@Filter/ManifestSkip",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::MetaYAML",
             "name" : "@BioPerl/@Filter/MetaYAML",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::License",
             "name" : "@BioPerl/@Filter/License",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::ExtraTests",
             "name" : "@BioPerl/@Filter/ExtraTests",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::ExecDir",
             "name" : "@BioPerl/@Filter/ExecDir",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::ShareDir",
             "name" : "@BioPerl/@Filter/ShareDir",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::MakeMaker",
@@ -148,47 +148,47 @@
                }
             },
             "name" : "@BioPerl/@Filter/MakeMaker",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::Manifest",
             "name" : "@BioPerl/@Filter/Manifest",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::TestRelease",
             "name" : "@BioPerl/@Filter/TestRelease",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::ConfirmRelease",
             "name" : "@BioPerl/@Filter/ConfirmRelease",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::UploadToCPAN",
             "name" : "@BioPerl/@Filter/UploadToCPAN",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::MetaConfig",
             "name" : "@BioPerl/MetaConfig",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::MetaJSON",
             "name" : "@BioPerl/MetaJSON",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::PkgVersion",
             "name" : "@BioPerl/PkgVersion",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::PodSyntaxTests",
             "name" : "@BioPerl/PodSyntaxTests",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::Test::NoTabs",
@@ -231,7 +231,7 @@
          {
             "class" : "Dist::Zilla::Plugin::PodCoverageTests",
             "name" : "@BioPerl/PodCoverageTests",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::MojibakeTests",
@@ -241,7 +241,7 @@
          {
             "class" : "Dist::Zilla::Plugin::AutoPrereqs",
             "name" : "@BioPerl/AutoPrereqs",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::AutoMetaResources",
@@ -251,7 +251,7 @@
          {
             "class" : "Dist::Zilla::Plugin::MetaResources",
             "name" : "@BioPerl/MetaResources",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::Test::EOL",
@@ -272,7 +272,7 @@
          {
             "class" : "Dist::Zilla::Plugin::Encoding",
             "name" : "@BioPerl/Encoding",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::PodWeaver",
@@ -289,97 +289,97 @@
                      {
                         "class" : "Pod::Weaver::Plugin::EnsurePod5",
                         "name" : "@CorePrep/EnsurePod5",
-                        "version" : "4.015"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Plugin::H1Nester",
                         "name" : "@CorePrep/H1Nester",
-                        "version" : "4.015"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Section::Name",
                         "name" : "@BioPerl/Name",
-                        "version" : "4.015"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Section::Version",
                         "name" : "@BioPerl/Version",
-                        "version" : "4.015"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Section::Region",
                         "name" : "@BioPerl/prelude",
-                        "version" : "4.015"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Section::Generic",
                         "name" : "SYNOPSIS",
-                        "version" : "4.015"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Section::Generic",
                         "name" : "DESCRIPTION",
-                        "version" : "4.015"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Section::Generic",
                         "name" : "OVERVIEW",
-                        "version" : "4.015"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Section::Collect",
                         "name" : "ATTRIBUTES",
-                        "version" : "4.015"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Section::Collect",
                         "name" : "METHODS",
-                        "version" : "4.015"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Section::Collect",
                         "name" : "FUNCTIONS",
-                        "version" : "4.015"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Section::Collect",
                         "name" : "INTERNAL METHODS",
-                        "version" : "4.015"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Section::Leftovers",
                         "name" : "@BioPerl/Leftovers",
-                        "version" : "4.015"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Section::Region",
                         "name" : "@BioPerl/postlude",
-                        "version" : "4.015"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Section::GenerateSection",
                         "name" : "FEEDBACK",
-                        "version" : "1.06"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Section::GenerateSection",
                         "name" : "Mailing lists",
-                        "version" : "1.06"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Section::GenerateSection",
                         "name" : "Support",
-                        "version" : "1.06"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Section::GenerateSection",
                         "name" : "Reporting bugs",
-                        "version" : "1.06"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Section::Legal::Complicated",
                         "name" : "@BioPerl/Legal",
-                        "version" : "1.22"
+                        "version" : "1.23"
                      },
                      {
                         "class" : "Pod::Weaver::Section::Contributors",
@@ -389,12 +389,12 @@
                      {
                         "class" : "Pod::Weaver::Plugin::SingleEncoding",
                         "name" : "SingleEncoding",
-                        "version" : "4.015"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Plugin::Transformer",
                         "name" : "@BioPerl/List",
-                        "version" : "4.015"
+                        "version" : "4.018"
                      },
                      {
                         "class" : "Pod::Weaver::Plugin::EnsureUniqueSections",
@@ -405,12 +405,12 @@
                }
             },
             "name" : "@BioPerl/PodWeaver",
-            "version" : "4.008"
+            "version" : "4.009"
          },
          {
             "class" : "Dist::Zilla::Plugin::NextRelease",
             "name" : "@BioPerl/NextRelease",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::Git::Check",
@@ -427,19 +427,20 @@
                   "changelog" : "Changes"
                },
                "Dist::Zilla::Role::Git::Repo" : {
-                  "git_version" : "2.18.0",
+                  "git_version" : "2.35.1",
                   "repo_root" : "."
                }
             },
             "name" : "@BioPerl/Git::Check",
-            "version" : "2.043"
+            "version" : "2.048"
          },
          {
             "class" : "Dist::Zilla::Plugin::Git::Commit",
             "config" : {
                "Dist::Zilla::Plugin::Git::Commit" : {
                   "add_files_in" : [],
-                  "commit_msg" : "v%v%n%n%c"
+                  "commit_msg" : "v%V%n%n%c",
+                  "signoff" : 0
                },
                "Dist::Zilla::Role::Git::DirtyFiles" : {
                   "allow_dirty" : [
@@ -450,7 +451,7 @@
                   "changelog" : "Changes"
                },
                "Dist::Zilla::Role::Git::Repo" : {
-                  "git_version" : "2.18.0",
+                  "git_version" : "2.35.1",
                   "repo_root" : "."
                },
                "Dist::Zilla::Role::Git::StringFormatter" : {
@@ -458,7 +459,7 @@
                }
             },
             "name" : "@BioPerl/Git::Commit",
-            "version" : "2.043"
+            "version" : "2.048"
          },
          {
             "class" : "Dist::Zilla::Plugin::Git::Tag",
@@ -472,7 +473,7 @@
                   "tag_message" : "%N-v%v"
                },
                "Dist::Zilla::Role::Git::Repo" : {
-                  "git_version" : "2.18.0",
+                  "git_version" : "2.35.1",
                   "repo_root" : "."
                },
                "Dist::Zilla::Role::Git::StringFormatter" : {
@@ -480,7 +481,7 @@
                }
             },
             "name" : "@BioPerl/Git::Tag",
-            "version" : "2.043"
+            "version" : "2.048"
          },
          {
             "class" : "Dist::Zilla::Plugin::CheckBin",
@@ -500,52 +501,52 @@
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":InstallModules",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":IncModules",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":TestFiles",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":ExtraTestFiles",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":ExecFiles",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":PerlExecFiles",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":ShareFiles",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":MainModule",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":AllFiles",
-            "version" : "6.012"
+            "version" : "6.024"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":NoFiles",
-            "version" : "6.012"
+            "version" : "6.024"
          }
       ],
       "zilla" : {
@@ -553,10 +554,11 @@
          "config" : {
             "is_trial" : 0
          },
-         "version" : "6.012"
+         "version" : "6.024"
       }
    },
-   "x_generated_by_perl" : "v5.26.2",
-   "x_serialization_backend" : "Cpanel::JSON::XS version 4.02"
+   "x_generated_by_perl" : "v5.34.0",
+   "x_serialization_backend" : "Cpanel::JSON::XS version 4.27",
+   "x_spdx_expression" : "Artistic-1.0-Perl OR GPL-1.0-or-later"
 }
 
diff --git a/META.yml b/META.yml
index 6f87d98..095c3e0 100644
--- a/META.yml
+++ b/META.yml
@@ -13,7 +13,7 @@ configure_requires:
   Devel::CheckBin: '0'
   ExtUtils::MakeMaker: '0'
 dynamic_config: 0
-generated_by: 'Dist::Zilla version 6.012, CPAN::Meta::Converter version 2.150010'
+generated_by: 'Dist::Zilla version 6.024, CPAN::Meta::Converter version 2.150010'
 license: perl
 meta-spec:
   url: http://module-build.sourceforge.net/META-spec-v1.4.html
@@ -51,7 +51,7 @@ resources:
 version: 1.7.3
 x_Dist_Zilla:
   perl:
-    version: '5.026002'
+    version: '5.034000'
   plugins:
     -
       class: Dist::Zilla::Plugin::GatherDir
@@ -65,74 +65,74 @@ x_Dist_Zilla:
           prune_directory: []
           root: .
       name: '@BioPerl/@Filter/GatherDir'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::PruneCruft
       name: '@BioPerl/@Filter/PruneCruft'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::ManifestSkip
       name: '@BioPerl/@Filter/ManifestSkip'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::MetaYAML
       name: '@BioPerl/@Filter/MetaYAML'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::License
       name: '@BioPerl/@Filter/License'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::ExtraTests
       name: '@BioPerl/@Filter/ExtraTests'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::ExecDir
       name: '@BioPerl/@Filter/ExecDir'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::ShareDir
       name: '@BioPerl/@Filter/ShareDir'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::MakeMaker
       config:
         Dist::Zilla::Role::TestRunner:
           default_jobs: 1
       name: '@BioPerl/@Filter/MakeMaker'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::Manifest
       name: '@BioPerl/@Filter/Manifest'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::TestRelease
       name: '@BioPerl/@Filter/TestRelease'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::ConfirmRelease
       name: '@BioPerl/@Filter/ConfirmRelease'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::UploadToCPAN
       name: '@BioPerl/@Filter/UploadToCPAN'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::MetaConfig
       name: '@BioPerl/MetaConfig'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::MetaJSON
       name: '@BioPerl/MetaJSON'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::PkgVersion
       name: '@BioPerl/PkgVersion'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::PodSyntaxTests
       name: '@BioPerl/PodSyntaxTests'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::Test::NoTabs
       config:
@@ -165,7 +165,7 @@ x_Dist_Zilla:
     -
       class: Dist::Zilla::Plugin::PodCoverageTests
       name: '@BioPerl/PodCoverageTests'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::MojibakeTests
       name: '@BioPerl/MojibakeTests'
@@ -173,7 +173,7 @@ x_Dist_Zilla:
     -
       class: Dist::Zilla::Plugin::AutoPrereqs
       name: '@BioPerl/AutoPrereqs'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::AutoMetaResources
       name: '@BioPerl/AutoMetaResources'
@@ -181,7 +181,7 @@ x_Dist_Zilla:
     -
       class: Dist::Zilla::Plugin::MetaResources
       name: '@BioPerl/MetaResources'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::Test::EOL
       config:
@@ -197,7 +197,7 @@ x_Dist_Zilla:
     -
       class: Dist::Zilla::Plugin::Encoding
       name: '@BioPerl/Encoding'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::PodWeaver
       config:
@@ -211,79 +211,79 @@ x_Dist_Zilla:
             -
               class: Pod::Weaver::Plugin::EnsurePod5
               name: '@CorePrep/EnsurePod5'
-              version: '4.015'
+              version: '4.018'
             -
               class: Pod::Weaver::Plugin::H1Nester
               name: '@CorePrep/H1Nester'
-              version: '4.015'
+              version: '4.018'
             -
               class: Pod::Weaver::Section::Name
               name: '@BioPerl/Name'
-              version: '4.015'
+              version: '4.018'
             -
               class: Pod::Weaver::Section::Version
               name: '@BioPerl/Version'
-              version: '4.015'
+              version: '4.018'
             -
               class: Pod::Weaver::Section::Region
               name: '@BioPerl/prelude'
-              version: '4.015'
+              version: '4.018'
             -
               class: Pod::Weaver::Section::Generic
               name: SYNOPSIS
-              version: '4.015'
+              version: '4.018'
             -
               class: Pod::Weaver::Section::Generic
               name: DESCRIPTION
-              version: '4.015'
+              version: '4.018'
             -
               class: Pod::Weaver::Section::Generic
               name: OVERVIEW
-              version: '4.015'
+              version: '4.018'
             -
               class: Pod::Weaver::Section::Collect
               name: ATTRIBUTES
-              version: '4.015'
+              version: '4.018'
             -
               class: Pod::Weaver::Section::Collect
               name: METHODS
-              version: '4.015'
+              version: '4.018'
             -
               class: Pod::Weaver::Section::Collect
               name: FUNCTIONS
-              version: '4.015'
+              version: '4.018'
             -
               class: Pod::Weaver::Section::Collect
               name: 'INTERNAL METHODS'
-              version: '4.015'
+              version: '4.018'
             -
               class: Pod::Weaver::Section::Leftovers
               name: '@BioPerl/Leftovers'
-              version: '4.015'
+              version: '4.018'
             -
               class: Pod::Weaver::Section::Region
               name: '@BioPerl/postlude'
-              version: '4.015'
+              version: '4.018'
             -
               class: Pod::Weaver::Section::GenerateSection
               name: FEEDBACK
-              version: '1.06'
+              version: '4.018'
             -
               class: Pod::Weaver::Section::GenerateSection
               name: 'Mailing lists'
-              version: '1.06'
+              version: '4.018'
             -
               class: Pod::Weaver::Section::GenerateSection
               name: Support
-              version: '1.06'
+              version: '4.018'
             -
               class: Pod::Weaver::Section::GenerateSection
               name: 'Reporting bugs'
-              version: '1.06'
+              version: '4.018'
             -
               class: Pod::Weaver::Section::Legal::Complicated
               name: '@BioPerl/Legal'
-              version: '1.22'
+              version: '1.23'
             -
               class: Pod::Weaver::Section::Contributors
               name: '@BioPerl/Contributors'
@@ -291,21 +291,21 @@ x_Dist_Zilla:
             -
               class: Pod::Weaver::Plugin::SingleEncoding
               name: SingleEncoding
-              version: '4.015'
+              version: '4.018'
             -
               class: Pod::Weaver::Plugin::Transformer
               name: '@BioPerl/List'
-              version: '4.015'
+              version: '4.018'
             -
               class: Pod::Weaver::Plugin::EnsureUniqueSections
               name: EnsureUniqueSections
               version: '0.163250'
       name: '@BioPerl/PodWeaver'
-      version: '4.008'
+      version: '4.009'
     -
       class: Dist::Zilla::Plugin::NextRelease
       name: '@BioPerl/NextRelease'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::Git::Check
       config:
@@ -318,16 +318,17 @@ x_Dist_Zilla:
           allow_dirty_match: []
           changelog: Changes
         Dist::Zilla::Role::Git::Repo:
-          git_version: 2.18.0
+          git_version: 2.35.1
           repo_root: .
       name: '@BioPerl/Git::Check'
-      version: '2.043'
+      version: '2.048'
     -
       class: Dist::Zilla::Plugin::Git::Commit
       config:
         Dist::Zilla::Plugin::Git::Commit:
           add_files_in: []
-          commit_msg: v%v%n%n%c
+          commit_msg: v%V%n%n%c
+          signoff: 0
         Dist::Zilla::Role::Git::DirtyFiles:
           allow_dirty:
             - Changes
@@ -335,12 +336,12 @@ x_Dist_Zilla:
           allow_dirty_match: []
           changelog: Changes
         Dist::Zilla::Role::Git::Repo:
-          git_version: 2.18.0
+          git_version: 2.35.1
           repo_root: .
         Dist::Zilla::Role::Git::StringFormatter:
           time_zone: local
       name: '@BioPerl/Git::Commit'
-      version: '2.043'
+      version: '2.048'
     -
       class: Dist::Zilla::Plugin::Git::Tag
       config:
@@ -352,12 +353,12 @@ x_Dist_Zilla:
           tag_format: '%N-v%v'
           tag_message: '%N-v%v'
         Dist::Zilla::Role::Git::Repo:
-          git_version: 2.18.0
+          git_version: 2.35.1
           repo_root: .
         Dist::Zilla::Role::Git::StringFormatter:
           time_zone: local
       name: '@BioPerl/Git::Tag'
-      version: '2.043'
+      version: '2.048'
     -
       class: Dist::Zilla::Plugin::CheckBin
       config:
@@ -372,47 +373,48 @@ x_Dist_Zilla:
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':InstallModules'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':IncModules'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':TestFiles'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':ExtraTestFiles'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':ExecFiles'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':PerlExecFiles'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':ShareFiles'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':MainModule'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':AllFiles'
-      version: '6.012'
+      version: '6.024'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':NoFiles'
-      version: '6.012'
+      version: '6.024'
   zilla:
     class: Dist::Zilla::Dist::Builder
     config:
       is_trial: '0'
-    version: '6.012'
-x_generated_by_perl: v5.26.2
+    version: '6.024'
+x_generated_by_perl: v5.34.0
 x_serialization_backend: 'YAML::Tiny version 1.73'
+x_spdx_expression: 'Artistic-1.0-Perl OR GPL-1.0-or-later'
diff --git a/Makefile.PL b/Makefile.PL
index 3c65d0e..7343321 100644
--- a/Makefile.PL
+++ b/Makefile.PL
@@ -1,4 +1,4 @@
-# This file was automatically generated by Dist::Zilla::Plugin::MakeMaker v6.012.
+# This file was automatically generated by Dist::Zilla::Plugin::MakeMaker v6.024.
 use strict;
 use warnings;
 
diff --git a/bin/bp_pairwise_kaks b/bin/bp_pairwise_kaks
index 8743145..f10fa37 100644
--- a/bin/bp_pairwise_kaks
+++ b/bin/bp_pairwise_kaks
@@ -241,14 +241,13 @@ User feedback is an integral part of the evolution of this and other
 Bioperl modules. Send your comments and suggestions preferably to
 the Bioperl mailing list.  Your participation is much appreciated.
 
-  bioperl-l@bioperl.org              - General discussion
-  http://bioperl.org/Support.html    - About the mailing lists
+  bioperl-l@bioperl.org               - General discussion
+  https://bioperl.org/Support.html    - About the mailing lists
 
 =head2 Support
 
 Please direct usage questions or support issues to the mailing list:
 I<bioperl-l@bioperl.org>
-
 rather than to the module maintainer directly. Many experienced and
 reponsive experts will be able look at the problem and quickly
 address it. Please include a thorough description of the problem
diff --git a/debian/changelog b/debian/changelog
index 13191d1..02d5fd7 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+libbio-tools-phylo-paml-perl (1.7.3+git20180701.1.5658f0d-1) UNRELEASED; urgency=low
+
+  * New upstream snapshot.
+
+ -- Debian Janitor <janitor@jelmer.uk>  Sun, 20 Mar 2022 17:31:43 -0000
+
 libbio-tools-phylo-paml-perl (1.7.3-3) unstable; urgency=medium
 
   * Team upload.
diff --git a/debian/patches/evolver-program-name.patch b/debian/patches/evolver-program-name.patch
index 319c9df..5e57478 100644
--- a/debian/patches/evolver-program-name.patch
+++ b/debian/patches/evolver-program-name.patch
@@ -3,9 +3,11 @@ Description: change evolver program name which in debian is paml-evolver
   paml-evolver to avoid conflicts with the surface evolver program.
 Author: David Miguel Susano Pinto <carandraug+dev@gmail.com>
 Forwarded: not-needed
---- a/Makefile.PL
-+++ b/Makefile.PL
-@@ -6,7 +6,7 @@
+Index: libbio-tools-phylo-paml-perl/Makefile.PL
+===================================================================
+--- libbio-tools-phylo-paml-perl.orig/Makefile.PL
++++ libbio-tools-phylo-paml-perl/Makefile.PL
+@@ -6,7 +6,7 @@ use warnings;
  use Devel::CheckBin;
  check_bin('basemlg');
  check_bin('codeml');
@@ -14,9 +16,11 @@ Forwarded: not-needed
  check_bin('yn00');
  
  use 5.006;
---- a/lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm
-+++ b/lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm
-@@ -25,7 +25,7 @@
+Index: libbio-tools-phylo-paml-perl/lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm
+===================================================================
+--- libbio-tools-phylo-paml-perl.orig/lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm
++++ libbio-tools-phylo-paml-perl/lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm
+@@ -25,7 +25,7 @@ use Cwd;
  BEGIN {
  
      $MINNAMELEN = 25;
@@ -25,7 +29,7 @@ Forwarded: not-needed
      if( defined $ENV{'PAMLDIR'} ) {
      $PROGRAM = Bio::Root::IO->catfile($ENV{'PAMLDIR'},$PROGRAMNAME). ($^O =~ /mswin/i ?'.exe':'');;
      }
-@@ -79,7 +79,7 @@
+@@ -79,7 +79,7 @@ BEGIN {
  
  
  sub program_name {
diff --git a/lib/Bio/Tools/Phylo/PAML.pm b/lib/Bio/Tools/Phylo/PAML.pm
index a41d914..28e6772 100644
--- a/lib/Bio/Tools/Phylo/PAML.pm
+++ b/lib/Bio/Tools/Phylo/PAML.pm
@@ -1883,14 +1883,13 @@ User feedback is an integral part of the evolution of this and other
 Bioperl modules. Send your comments and suggestions preferably to
 the Bioperl mailing list.  Your participation is much appreciated.
 
-  bioperl-l@bioperl.org              - General discussion
-  http://bioperl.org/Support.html    - About the mailing lists
+  bioperl-l@bioperl.org               - General discussion
+  https://bioperl.org/Support.html    - About the mailing lists
 
 =head2 Support
 
 Please direct usage questions or support issues to the mailing list:
 I<bioperl-l@bioperl.org>
-
 rather than to the module maintainer directly. Many experienced and
 reponsive experts will be able look at the problem and quickly
 address it. Please include a thorough description of the problem
diff --git a/lib/Bio/Tools/Phylo/PAML/Codeml.pm b/lib/Bio/Tools/Phylo/PAML/Codeml.pm
index 246d588..ec3b268 100644
--- a/lib/Bio/Tools/Phylo/PAML/Codeml.pm
+++ b/lib/Bio/Tools/Phylo/PAML/Codeml.pm
@@ -231,14 +231,13 @@ User feedback is an integral part of the evolution of this and other
 Bioperl modules. Send your comments and suggestions preferably to
 the Bioperl mailing list.  Your participation is much appreciated.
 
-  bioperl-l@bioperl.org              - General discussion
-  http://bioperl.org/Support.html    - About the mailing lists
+  bioperl-l@bioperl.org               - General discussion
+  https://bioperl.org/Support.html    - About the mailing lists
 
 =head2 Support
 
 Please direct usage questions or support issues to the mailing list:
 I<bioperl-l@bioperl.org>
-
 rather than to the module maintainer directly. Many experienced and
 reponsive experts will be able look at the problem and quickly
 address it. Please include a thorough description of the problem
diff --git a/lib/Bio/Tools/Phylo/PAML/ModelResult.pm b/lib/Bio/Tools/Phylo/PAML/ModelResult.pm
index fe7d441..6d34548 100644
--- a/lib/Bio/Tools/Phylo/PAML/ModelResult.pm
+++ b/lib/Bio/Tools/Phylo/PAML/ModelResult.pm
@@ -497,14 +497,13 @@ User feedback is an integral part of the evolution of this and other
 Bioperl modules. Send your comments and suggestions preferably to
 the Bioperl mailing list.  Your participation is much appreciated.
 
-  bioperl-l@bioperl.org              - General discussion
-  http://bioperl.org/Support.html    - About the mailing lists
+  bioperl-l@bioperl.org               - General discussion
+  https://bioperl.org/Support.html    - About the mailing lists
 
 =head2 Support
 
 Please direct usage questions or support issues to the mailing list:
 I<bioperl-l@bioperl.org>
-
 rather than to the module maintainer directly. Many experienced and
 reponsive experts will be able look at the problem and quickly
 address it. Please include a thorough description of the problem
diff --git a/lib/Bio/Tools/Phylo/PAML/Result.pm b/lib/Bio/Tools/Phylo/PAML/Result.pm
index 4ea7fcd..dd0e641 100644
--- a/lib/Bio/Tools/Phylo/PAML/Result.pm
+++ b/lib/Bio/Tools/Phylo/PAML/Result.pm
@@ -1116,14 +1116,13 @@ User feedback is an integral part of the evolution of this and other
 Bioperl modules. Send your comments and suggestions preferably to
 the Bioperl mailing list.  Your participation is much appreciated.
 
-  bioperl-l@bioperl.org              - General discussion
-  http://bioperl.org/Support.html    - About the mailing lists
+  bioperl-l@bioperl.org               - General discussion
+  https://bioperl.org/Support.html    - About the mailing lists
 
 =head2 Support
 
 Please direct usage questions or support issues to the mailing list:
 I<bioperl-l@bioperl.org>
-
 rather than to the module maintainer directly. Many experienced and
 reponsive experts will be able look at the problem and quickly
 address it. Please include a thorough description of the problem
diff --git a/lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm b/lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm
index 8e359c0..b001f5c 100644
--- a/lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm
+++ b/lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm
@@ -609,14 +609,13 @@ User feedback is an integral part of the evolution of this and other
 Bioperl modules. Send your comments and suggestions preferably to
 the Bioperl mailing list.  Your participation is much appreciated.
 
-  bioperl-l@bioperl.org              - General discussion
-  http://bioperl.org/Support.html    - About the mailing lists
+  bioperl-l@bioperl.org               - General discussion
+  https://bioperl.org/Support.html    - About the mailing lists
 
 =head2 Support
 
 Please direct usage questions or support issues to the mailing list:
 I<bioperl-l@bioperl.org>
-
 rather than to the module maintainer directly. Many experienced and
 reponsive experts will be able look at the problem and quickly
 address it. Please include a thorough description of the problem
diff --git a/lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm b/lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm
index 1457638..117b4df 100644
--- a/lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm
+++ b/lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm
@@ -766,14 +766,13 @@ User feedback is an integral part of the evolution of this and other
 Bioperl modules. Send your comments and suggestions preferably to
 the Bioperl mailing list.  Your participation is much appreciated.
 
-  bioperl-l@bioperl.org              - General discussion
-  http://bioperl.org/Support.html    - About the mailing lists
+  bioperl-l@bioperl.org               - General discussion
+  https://bioperl.org/Support.html    - About the mailing lists
 
 =head2 Support
 
 Please direct usage questions or support issues to the mailing list:
 I<bioperl-l@bioperl.org>
-
 rather than to the module maintainer directly. Many experienced and
 reponsive experts will be able look at the problem and quickly
 address it. Please include a thorough description of the problem
diff --git a/lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm b/lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm
index c42ea78..b045828 100644
--- a/lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm
+++ b/lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm
@@ -686,14 +686,13 @@ User feedback is an integral part of the evolution of this and other
 Bioperl modules. Send your comments and suggestions preferably to
 the Bioperl mailing list.  Your participation is much appreciated.
 
-  bioperl-l@bioperl.org              - General discussion
-  http://bioperl.org/Support.html    - About the mailing lists
+  bioperl-l@bioperl.org               - General discussion
+  https://bioperl.org/Support.html    - About the mailing lists
 
 =head2 Support
 
 Please direct usage questions or support issues to the mailing list:
 I<bioperl-l@bioperl.org>
-
 rather than to the module maintainer directly. Many experienced and
 reponsive experts will be able look at the problem and quickly
 address it. Please include a thorough description of the problem
diff --git a/lib/Bio/Tools/Run/Phylo/PAML/Yn00.pm b/lib/Bio/Tools/Run/Phylo/PAML/Yn00.pm
index 1563dee..76d0f16 100644
--- a/lib/Bio/Tools/Run/Phylo/PAML/Yn00.pm
+++ b/lib/Bio/Tools/Run/Phylo/PAML/Yn00.pm
@@ -449,14 +449,13 @@ User feedback is an integral part of the evolution of this and other
 Bioperl modules. Send your comments and suggestions preferably to
 the Bioperl mailing list.  Your participation is much appreciated.
 
-  bioperl-l@bioperl.org              - General discussion
-  http://bioperl.org/Support.html    - About the mailing lists
+  bioperl-l@bioperl.org               - General discussion
+  https://bioperl.org/Support.html    - About the mailing lists
 
 =head2 Support
 
 Please direct usage questions or support issues to the mailing list:
 I<bioperl-l@bioperl.org>
-
 rather than to the module maintainer directly. Many experienced and
 reponsive experts will be able look at the problem and quickly
 address it. Please include a thorough description of the problem