Run of fresh-snapshots for lambda-align

Try this locally (using silver-platter):

debian-svp new-upstream --snapshot lambda-align 
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Processing: lambda-align
 (107/625)   
Total 625 (delta 315), reused 570 (delta 278)
42)   
Total 42 (delta 9), reused 36 (delta 6)
Total 29 (delta 6), reused 21 (delta 1)

Using upstream branch https://github.com/seqan/lambda (guessed)
Total 2469 (delta 0), reused 0 (delta 0), pack-reused 2469
Using version string 1.0.3+git20190405.568a3eb.
Exporting upstream branch revision b'git-v1:568a3ebcd5a98dec5c22ee9626d68bdb901297ee' to create the tarball
Total 2469 (delta 0), reused 0 (delta 0), pack-reused 2469
lambda-v1.0.3 does not point to a valid object
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v1.9.5 points at non-present sha 0215a185ba147ad0800d96f052129f43dfbc0e6f
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v2.0.0 points at non-present sha e8671b5d8ff2f38e8a71cfb5efc4d6e5cf9e6f49
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v1.0.0 points at non-present sha d467f2f8db92951ad24d04523f8765a6cb20f4fe
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v0.9.4 points at non-present sha 1240bde2fbe79ea09a62728991833f9c284ff4ac
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v0.9.3 points at non-present sha 35c924649875ceeaa07aef243efc2aaf2a8706f4
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v1.9.4 points at non-present sha 003de024a60ce587eddff498c3ab3b6a6d36cfec
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v0.9.2 points at non-present sha ce761471e220c12531c8ef4cb6b83d9f44e6021c
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v0.9.0 points at non-present sha bf53f5533079a5a031a8ebef5e2a6966660b3edf
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v1.0.2 points at non-present sha 81f07e339010b47dd40a5ea93cbce2b5dff75beb
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v1.9.3 points at non-present sha 95bec7d0486bf3270774010c136df75885e8b1c4
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v1.9.0 points at non-present sha 897c75a3b8af6cbb78e1e93e18890b1eeb1495c0
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v1.9.2 points at non-present sha 0fa182f23b81cd1ae99127ab85f17edbf906a7d6
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v0.9.1 points at non-present sha 748880e7f462a879b5aceebdbb55bf343e19d4f2
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v1.9.5 points at non-present sha 0215a185ba147ad0800d96f052129f43dfbc0e6f
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v1.0.1 points at non-present sha 2fce70f0a54843bf1433d534ec3a2fcffc5b89e6
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v2.0.0 points at non-present sha e8671b5d8ff2f38e8a71cfb5efc4d6e5cf9e6f49
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v1.0.0 points at non-present sha d467f2f8db92951ad24d04523f8765a6cb20f4fe
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v0.9.4 points at non-present sha 1240bde2fbe79ea09a62728991833f9c284ff4ac
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v1.9.1 points at non-present sha 2a04ea7bccc9a36be3923d716c4d7c08f8d39feb
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v0.9.3 points at non-present sha 35c924649875ceeaa07aef243efc2aaf2a8706f4
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/usr/lib/python3/dist-packages/dulwich/repo.py:415: UserWarning: ref refs/tags/lambda-v1.9.4 points at non-present sha 003de024a60ce587eddff498c3ab3b6a6d36cfec
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lambda-v0.9.2 does not point to a valid object
lambda-v0.9.0 does not point to a valid object
lambda-v1.0.2 does not point to a valid object
lambda-v1.9.3 does not point to a valid object
lambda-v1.9.0 does not point to a valid object
lambda-v1.9.2 does not point to a valid object
lambda-v0.9.1 does not point to a valid object
lambda-v1.9.5 does not point to a valid object
lambda-v1.0.1 does not point to a valid object
lambda-v2.0.0 does not point to a valid object
lambda-v1.0.0 does not point to a valid object
lambda-v0.9.4 does not point to a valid object
lambda-v1.9.1 does not point to a valid object
lambda-v0.9.3 does not point to a valid object
lambda-v1.9.4 does not point to a valid object
All changes applied successfully.
lambda-v0.9.2 does not point to a valid object
lambda-v0.9.0 does not point to a valid object
lambda-v1.0.2 does not point to a valid object
lambda-v1.9.3 does not point to a valid object
lambda-v1.9.0 does not point to a valid object
lambda-v1.9.2 does not point to a valid object
lambda-v0.9.1 does not point to a valid object
lambda-v1.9.5 does not point to a valid object
lambda-v1.0.1 does not point to a valid object
lambda-v2.0.0 does not point to a valid object
lambda-v1.0.0 does not point to a valid object
lambda-v0.9.4 does not point to a valid object
lambda-v1.9.1 does not point to a valid object
lambda-v0.9.3 does not point to a valid object
lambda-v1.9.4 does not point to a valid object
Committing to: /home/janitor/tmp/tmply0r56bb/lambda-align/
modified .travis.yml
modified CMakeLists.txt
modified INFO
added LICENSE-AGPL3.rst
modified LICENSE-BSD.rst
deleted LICENSE-GPL3.rst
modified LICENSE.rst
modified README.rst
added bin
added bin/lambda2.in
modified debian/changelog
modified src/CMakeLists.txt
deleted src/holders.hpp
modified src/lambda.cpp
deleted src/lambda.hpp
deleted src/lambda_indexer.cpp
deleted src/lambda_indexer.hpp
deleted src/lambda_indexer_misc.hpp
deleted src/match.hpp
deleted src/misc.hpp
added src/mkindex.hpp
added src/mkindex_algo.hpp
added src/mkindex_misc.hpp
added src/mkindex_options.hpp
added src/mkindex_saca.hpp
deleted src/options.hpp
deleted src/output.hpp
deleted src/radix_inplace.h
added src/search.hpp
added src/search_algo.hpp
added src/search_datastructures.hpp
added src/search_misc.hpp
added src/search_options.hpp
added src/search_output.hpp
added src/shared_definitions.hpp
added src/shared_misc.hpp
added src/shared_options.hpp
Committed revision 76.
Worker failed: An error occurred refreshing quilt patch force-link-rt-pthread.patch: 

Applying patch debian/patches/force-link-rt-pthread.patch
patching file src/CMakeLists.txt
Hunk #1 FAILED at 208.
1 out of 1 hunk FAILED -- rejects in file src/CMakeLists.txt
Patch debian/patches/force-link-rt-pthread.patch does not apply (enforce with -f)

Elapsed time: 0:01:51.859145

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