Run of fresh-snapshots for mcaller

Merge these changes:

git pull https://janitor.debian.net/git/mcaller fresh-snapshots/main
git pull https://janitor.debian.net/git/mcaller fresh-snapshots/pristine-tar
git pull https://janitor.debian.net/git/mcaller fresh-snapshots/upstream

Summary

Merged new upstream version: 1.0.3+git20210625.b415090+ds (was: 1.0.3+git20210624.b415090).

Diff

Branch: main

diff --git a/debian/changelog b/debian/changelog
index c7ba804..5e6a8d6 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+mcaller (1.0.3+git20210625.b415090+ds-1) UNRELEASED; urgency=low
+
+  * New upstream snapshot.
+
+ -- Debian Janitor <janitor@jelmer.uk>  Fri, 26 Aug 2022 00:48:41 -0000
+
 mcaller (1.0.3+git20210624.b415090-3) unstable; urgency=medium
 
   * Team upload.
diff --git a/debian/patches/prefixes.patch b/debian/patches/prefixes.patch
index 9cfdb17..b3aebb1 100644
--- a/debian/patches/prefixes.patch
+++ b/debian/patches/prefixes.patch
@@ -6,6 +6,8 @@ Forwarded: https://github.com/al-mcintyre/mCaller/issues/34#issuecomment-1107786
 Last-Update: 2022-04-24
 ---
 This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+Index: mcaller/r94_model_NN_6_m6A.pkl
+===================================================================
 --- mcaller.orig/r94_model_NN_6_m6A.pkl
 +++ mcaller/r94_model_NN_6_m6A.pkl
 @@ -1,7 +1,7 @@
@@ -17,7 +19,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
  MLPClassifier
  p2
  c__builtin__
-@@ -68,7 +68,7 @@
+@@ -68,7 +68,7 @@ S'A\x00\x00m6A'
  tbsS'_label_binarizer'
  p20
  g1
@@ -26,16 +28,18 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
  LabelBinarizer
  p21
  g3
-@@ -445,4 +445,4 @@
+@@ -445,4 +445,4 @@ I00
  S'p\xe7\xbe\xba\x87\xceM?'
  tbasg93
  F0.001
 -sbsb.
 \ No newline at end of file
 +sbsb.
+Index: mcaller/r95_twobase_model_NN_6_m6A.pkl
+===================================================================
 --- mcaller.orig/r95_twobase_model_NN_6_m6A.pkl
 +++ mcaller/r95_twobase_model_NN_6_m6A.pkl
-@@ -4,7 +4,7 @@
+@@ -4,7 +4,7 @@ p2
  ccopy_reg
  _reconstructor
  p3
@@ -44,7 +48,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
  MLPClassifier
  p4
  c__builtin__
-@@ -71,7 +71,7 @@
+@@ -71,7 +71,7 @@ S'A\x00\x00m6A'
  tbsS'_label_binarizer'
  p22
  g3
@@ -53,7 +57,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
  LabelBinarizer
  p23
  g5
-@@ -1013,4 +1013,4 @@
+@@ -1013,4 +1013,4 @@ I00
  S'Id\x1f\x8eJ\x03\x86\xbf'
  tbasg156
  F0.001
diff --git a/debian/patches/shebang.patch b/debian/patches/shebang.patch
index 322ac51..8664378 100644
--- a/debian/patches/shebang.patch
+++ b/debian/patches/shebang.patch
@@ -1,27 +1,27 @@
-Index: mcaller-0.0/compare_genomes.py
+Index: mcaller/compare_genomes.py
 ===================================================================
---- mcaller-0.0.orig/compare_genomes.py
-+++ mcaller-0.0/compare_genomes.py
+--- mcaller.orig/compare_genomes.py
++++ mcaller/compare_genomes.py
 @@ -1,4 +1,4 @@
 -#!/usr/bin/env python
 +#!/usr/bin/python3
  import sys
  import numpy as np
  import os
-Index: mcaller-0.0/mCaller.py
+Index: mcaller/mCaller.py
 ===================================================================
---- mcaller-0.0.orig/mCaller.py
-+++ mcaller-0.0/mCaller.py
+--- mcaller.orig/mCaller.py
++++ mcaller/mCaller.py
 @@ -1,4 +1,4 @@
 -#!/usr/bin/env python
 +#!/usr/bin/python3
  #A program to classify bases as methylated or unmethylated based on long-range signals using the output from nanopolish
  #Alexa McIntyre, 2016-2018
  
-Index: mcaller-0.0/make_bed.py
+Index: mcaller/make_bed.py
 ===================================================================
---- mcaller-0.0.orig/make_bed.py
-+++ mcaller-0.0/make_bed.py
+--- mcaller.orig/make_bed.py
++++ mcaller/make_bed.py
 @@ -1,4 +1,4 @@
 -#!/usr/bin/env python
 +#!/usr/bin/python3

Branch: pristine-tar

diff --git a/mcaller_1.0.3+git20210625.b415090+ds.orig.tar.gz.delta b/mcaller_1.0.3+git20210625.b415090+ds.orig.tar.gz.delta
new file mode 100644
index 0000000..bf234b3
Binary files /dev/null and b/mcaller_1.0.3+git20210625.b415090+ds.orig.tar.gz.delta differ
diff --git a/mcaller_1.0.3+git20210625.b415090+ds.orig.tar.gz.id b/mcaller_1.0.3+git20210625.b415090+ds.orig.tar.gz.id
new file mode 100644
index 0000000..10837d1
--- /dev/null
+++ b/mcaller_1.0.3+git20210625.b415090+ds.orig.tar.gz.id
@@ -0,0 +1 @@
+6f02b52fd92d627a48d23fe6f4e467ab52c0538a

Branch: upstream

Tag: upstream/1.0.3+git20210625.b415090+ds

Publish Blockers

  • ☑ run was successful
  • ☑ package has not been removed from the archive
  • ☑ command has not changed
  • ☑ review not required
  • ☑ 0 publish attempts so far.not currently attempting to back off
  • ☒ merge proposals for the package maintainer are currently being rate-limited (open: 1383, max open: 300)
  • ☑ change set 234de70a-3d72-4cdc-8bc9-214ee5c64826 is ready

Resulting package

The resulting binary packages can be installed (if you have the apt repository enabled) by running one of:

apt install -t fresh-snapshots mcaller

Lintian Result

Full worker log Full build log