Run of lintian-fixes for salmon

Try this locally (using the lintian-brush package):

debcheckout salmon
cd salmon
lintian-brush

Merge these changes:

git pull https://janitor.debian.net/git/salmon lintian-fixes/main

Summary

  • Set upstream metadata fields: Name.

Diff

diff --git a/debian/changelog b/debian/changelog
index 8803904..d13de6c 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+salmon (0.12.0+ds1-2) UNRELEASED; urgency=medium
+
+  * Use secure copyright file specification URI.
+  * Set upstream metadata fields: Name.
+
+ -- Debian Janitor <janitor@jelmer.uk>  Wed, 08 May 2019 06:41:27 +0000
+
 salmon (0.12.0+ds1-1) unstable; urgency=medium
 
   * Team upload.
diff --git a/debian/copyright b/debian/copyright
index 031da73..1ad9ebf 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: salmon
 Source: https://github.com/COMBINE-lab/salmon/
 Files-Excluded: doc/build/*
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
index de4aeb2..b9a71ec 100644
--- a/debian/upstream/metadata
+++ b/debian/upstream/metadata
@@ -1,17 +1,17 @@
 Reference:
- Author: Patro, Rob and Duggal, Geet and Kingsford, Carl
- Title: >
-  Accurate, fast, and model-aware transcript expression
-  quantification with Salmon
- Journal: bioRxiv
- Year: 2015
- DOI: 10.1101/021592
- URL: http://biorxiv.org/content/early/2015/10/03/021592
- eprint: http://biorxiv.org/content/early/2015/10/03/021592.full.pdf
+  Author: Patro, Rob and Duggal, Geet and Kingsford, Carl
+  Title: "Accurate, fast, and model-aware transcript expression quantification with\
+    \ Salmon\n"
+  Journal: bioRxiv
+  Year: 2015
+  DOI: 10.1101/021592
+  URL: http://biorxiv.org/content/early/2015/10/03/021592
+  eprint: http://biorxiv.org/content/early/2015/10/03/021592.full.pdf
 Registry:
- - Name: OMICtools
-   Entry: OMICS_09075
- - Name: bio.tools
-   Entry: NA
- - Name: SciCrunch
-   Entry: NA
+- Name: OMICtools
+  Entry: OMICS_09075
+- Name: bio.tools
+  Entry: NA
+- Name: SciCrunch
+  Entry: NA
+Name: salmon

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