Run of lintian-fixes for snp-sites

Try this locally (using the lintian-brush package):

debcheckout snp-sites
cd snp-sites
lintian-brush

Merge these changes:

git pull https://janitor.debian.net/git/snp-sites lintian-fixes/main

Summary

Diff

diff --git a/debian/changelog b/debian/changelog
index 443ccd6..1f506f6 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,15 @@
+snp-sites (2.5.1-2) UNRELEASED; urgency=medium
+
+  * Trim trailing whitespace.
+  * debian/copyright: use spaces rather than tabs to start continuation
+    lines.
+  * Add missing build dependency on dh addon.
+  * Bump debhelper from old 11 to 12.
+  * Set debhelper-compat version in Build-Depends.
+  * Drop unnecessary dependency on dh-autoreconf.
+
+ -- Debian Janitor <janitor@jelmer.uk>  Sat, 21 Mar 2020 05:21:15 +0000
+
 snp-sites (2.5.1-1) unstable; urgency=medium
 
   [ Andreas Tille ]
@@ -68,7 +80,7 @@ snp-sites (2.2.2-1) unstable; urgency=medium
 
 snp-sites (2.1.3-2) unstable; urgency=medium
 
-  * Add copyright entry for new script. 
+  * Add copyright entry for new script.
 
  -- Sascha Steinbiss <sascha@steinbiss.name>  Sat, 30 Jan 2016 11:20:21 +0000
 
@@ -94,7 +106,7 @@ snp-sites (2.1.0-2) unstable; urgency=medium
 snp-sites (2.1.0-1) unstable; urgency=medium
 
   * New upstream release
-  * Add simple autopkgtest 
+  * Add simple autopkgtest
 
  -- Sascha Steinbiss <sascha@steinbiss.name>  Thu, 03 Dec 2015 21:40:00 +0000
 
@@ -133,4 +145,3 @@ snp-sites (1.3-1) unstable; urgency=low
   * Initial release (Closes: #735180)
 
  -- Jorge Soares <j.s.soares@gmail.com>  Fri, 10 Jan 2014 15:55:19 +0000
-
diff --git a/debian/compat b/debian/compat
deleted file mode 100644
index b4de394..0000000
--- a/debian/compat
+++ /dev/null
@@ -1 +0,0 @@
-11
diff --git a/debian/control b/debian/control
index 79864c7..147bc9d 100644
--- a/debian/control
+++ b/debian/control
@@ -5,7 +5,7 @@ Uploaders: Jorge Soares <j.s.soares@gmail.com>,
            Sascha Steinbiss <satta@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11),
+Build-Depends: debhelper-compat (= 12),
                zlib1g-dev,
                check,
                pkg-config,
diff --git a/debian/copyright b/debian/copyright
index 25c1cc9..0fab9e9 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -4,8 +4,8 @@ Source: https://github.com/sanger-pathogens/snp-sites
 
 Files: *
 Copyright:
-	2012-2013 Andrew Page  <ap13@sanger.ac.uk>
-	2013-2013 Jorge Soares <js21@sanger.ac.uk>
+ 	2012-2013 Andrew Page  <ap13@sanger.ac.uk>
+ 	2013-2013 Jorge Soares <js21@sanger.ac.uk>
 License: GPL-3+
 
 Files: paper_supporting_material/snp_sites_create_simulated_data
@@ -32,7 +32,7 @@ License: GPL-3+
 
 Files: src/kseq.h
 Copyright:
-	2008-2011 Attractive Chaos <attractor@live.co.uk>
+ 	2008-2011 Attractive Chaos <attractor@live.co.uk>
 License: MIT
  Permission is hereby granted, free of charge, to any person obtaining
  a copy of this software and associated documentation files (the
diff --git a/debian/rules b/debian/rules
index 0a940ca..16df0cd 100755
--- a/debian/rules
+++ b/debian/rules
@@ -9,7 +9,7 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all
 mandir := $(CURDIR)/debian/man
 
 %:
-	dh $@ --with autoreconf
+	dh $@
 
 override_dh_install:
 	dh_install

Debdiff

[The following lists of changes regard files as different if they have different names, permissions or owners.]

Files in second set of .debs but not in first

-rw-r--r--  root/root   /usr/lib/debug/.build-id/1e/23231483bc6affeb15c50b30f15bcdf092062b.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/48/4271bdd168947622f0a60c7e748c32ea85687f.debug

Files in first set of .debs but not in second

-rw-r--r--  root/root   /usr/lib/debug/.build-id/90/f2fbe93ba75854c8cab49195d63bc9e9cc72e3.debug
-rw-r--r--  root/root   /usr/lib/debug/.build-id/b7/c105ecf8243cdd20c3f2a7a9e305b36f88a579.debug

No differences were encountered between the control files of package libsnp-sites1

Control files of package libsnp-sites1-dbgsym: lines which differ (wdiff format)

  • Build-Ids: 90f2fbe93ba75854c8cab49195d63bc9e9cc72e3 484271bdd168947622f0a60c7e748c32ea85687f

No differences were encountered between the control files of package libsnp-sites1-dev

Control files of package snp-sites: lines which differ (wdiff format)

  • Depends: libc6 (>= 2.4), libsnp-sites1 (>= 2.5.1)

Control files of package snp-sites-dbgsym: lines which differ (wdiff format)

  • Build-Ids: b7c105ecf8243cdd20c3f2a7a9e305b36f88a579 1e23231483bc6affeb15c50b30f15bcdf092062b

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