New Upstream Release - cmlxom

Ready changes

Summary

Merged new upstream version: 4.5 (was: 4.3).

Diff

diff --git a/.github/workflows/maven.yml b/.github/workflows/maven.yml
index 60f181f..c44e941 100644
--- a/.github/workflows/maven.yml
+++ b/.github/workflows/maven.yml
@@ -10,14 +10,17 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        java: [ '8', '11', '14', '17' ]
+        java: [ 8, 11, 17, 19 ]
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v3
     - name: Set up JDK ${{ matrix.java }}
-      uses: actions/setup-java@v2
+      uses: actions/setup-java@v3
       with:
         java-version: ${{ matrix.java }}
-        distribution: 'adopt'
+        distribution: 'temurin'
     - name: Build with Maven
       run: mvn clean install -Dgpg.skip -Dmaven.javadoc.skip=true
+    - name: Upload coverage reports to Codecov
+      uses: codecov/codecov-action@v3
+
diff --git a/.gitignore b/.gitignore
index 56e8931..09180ad 100755
--- a/.gitignore
+++ b/.gitignore
@@ -1,7 +1,7 @@
 foo
-^.project$
-^.settings/
-^.classpath$
-^.gitignore~$
+.project
+.settings/
+.classpath
+.gitignore~
 ^target/.*
 /target/
diff --git a/CITATION.cff b/CITATION.cff
index 608e88f..2cbae0f 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -1,8 +1,8 @@
 cff-version: 1.2.0
 message: "If you use this software, please cite it as below."
 title: CMLXOM
-version: 4.3
-date-released: 2022-08-22
+version: 4.5
+date-released: 2023-04-09
 url: "https://github.com/BlueObelisk/cmlxom"
 preferred-citation:
   type: article
diff --git a/README.md b/README.md
index ea040cd..1938eca 100644
--- a/README.md
+++ b/README.md
@@ -2,6 +2,7 @@
 [![Maven Central](https://maven-badges.herokuapp.com/maven-central/org.blueobelisk/cmlxom/badge.svg)](https://maven-badges.herokuapp.com/maven-central/org.blueobelisk/cmlxom)
 [![Build Status](https://github.com/BlueObelisk/cmlxom/actions/workflows/maven.yml/badge.svg)](https://github.com/BlueObelisk/cmlxom/actions/workflows/maven.yml)
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5815142.svg)](https://doi.org/10.5281/zenodo.5815142)
+[![codecov](https://codecov.io/gh/BlueObelisk/cmlxom/branch/main/graph/badge.svg?token=E1NGWVWL04)](https://codecov.io/gh/BlueObelisk/cmlxom)
 
 A Java library for processing CML,
 implementing the XML object model (XOM) for the Chemical Markup Language (CML).
@@ -11,13 +12,12 @@ implementing the XML object model (XOM) for the Chemical Markup Language (CML).
 Instructions to increase the version:
 
 ```shell
-mvn versions:set -DnewVersion=4.4-SNAPSHOT
+mvn versions:set -DnewVersion=4.6-SNAPSHOT
 ```
 
 Deploy to Sonatype with the following commands, for snapshots and releases respectively:
 
 ```sh1ll
 mvn clean deploy
-mvn clean deploy -P release
 ```
 
diff --git a/debian/changelog b/debian/changelog
index 9de7abb..6fdbf2a 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+cmlxom (4.5-1) UNRELEASED; urgency=low
+
+  * New upstream release.
+
+ -- Debian Janitor <janitor@jelmer.uk>  Sun, 09 Apr 2023 18:11:50 -0000
+
 cmlxom (4.3-1) unstable; urgency=medium
 
   * New upstream version 4.3
diff --git a/pom.xml b/pom.xml
index 6b2b354..3ab1e46 100644
--- a/pom.xml
+++ b/pom.xml
@@ -5,7 +5,7 @@
 	<modelVersion>4.0.0</modelVersion>
 	<groupId>org.blueobelisk</groupId>
 	<artifactId>cmlxom</artifactId>
-	<version>4.3</version>
+	<version>4.5</version>
 	<packaging>jar</packaging>
 	<name>CMLXOM</name>
 	<description>A Java library for processing CML</description>
@@ -167,7 +167,7 @@
 			<plugin>
         			<groupId>org.apache.maven.plugins</groupId>
         			<artifactId>maven-compiler-plugin</artifactId>
-        			<version>3.8.1</version>
+        			<version>3.10.1</version>
         			<configuration>
           				<source>1.8</source>
           				<target>1.8</target>
@@ -176,7 +176,7 @@
             <plugin>
                 <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-javadoc-plugin</artifactId>
-                <version>3.3.2</version>
+                <version>3.4.1</version>
 				<configuration>
 					<doclint>all,-missing</doclint>
 					<source>8</source>
@@ -283,9 +283,28 @@
                         </goals>
                     </execution>
                 </executions>
-            </plugin>
-		</plugins>
-	</build>
+      </plugin>
+      <plugin>
+        <groupId>org.jacoco</groupId>
+        <artifactId>jacoco-maven-plugin</artifactId>
+        <version>0.8.8</version>
+        <executions>
+          <execution>
+            <id>start-agent</id>
+            <goals>
+              <goal>prepare-agent</goal>
+            </goals>
+          </execution>
+          <execution>
+            <id>generate-report</id>
+            <goals>
+              <goal>report</goal>
+            </goals>
+          </execution>
+        </executions>
+      </plugin>
+    </plugins>
+  </build>
 
   <distributionManagement>
     <snapshotRepository>
@@ -316,12 +335,12 @@
 		<dependency>
 			<groupId>org.blueobelisk</groupId>
 			<artifactId>euclid</artifactId>
-			<version>2.3</version>
+			<version>2.5</version>
 		</dependency>
 		<dependency>
 			<groupId>xom</groupId>
 			<artifactId>xom</artifactId>
-			<version>1.3.7</version>
+			<version>1.3.8</version>
 			<exclusions>
 				<exclusion>
 					<groupId>xerces</groupId>
@@ -342,7 +361,7 @@
 		<dependency>
 			<groupId>joda-time</groupId>
 			<artifactId>joda-time</artifactId>
-			<version>2.11.0</version>
+			<version>2.12.5</version>
 		</dependency>
 		<dependency>
 			<groupId>commons-io</groupId>
@@ -352,7 +371,7 @@
 		<dependency>
 			<groupId>org.apache.logging.log4j</groupId>
 			<artifactId>log4j-1.2-api</artifactId>
-			<version>2.18.0</version>
+			<version>2.20.0</version>
 		</dependency>
 		<dependency>
 			<groupId>org.ccil.cowan.tagsoup</groupId>

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© 2018-2023 Jelmer Vernooij. File a bug. Source code. Published under the GNU GPLv2 or later.