New Upstream Release - r-bioc-qvalue
Ready changes
Summary
Merged new upstream version: 2.32.0 (was: 2.30.0).
Diff
diff --git a/DESCRIPTION b/DESCRIPTION
index edb97e5..e2ded71 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,17 +1,17 @@
Package: qvalue
Type: Package
Title: Q-value estimation for false discovery rate control
-Version: 2.30.0
+Version: 2.32.0
Date: 2015-03-24
Authors@R: as.person(c(
"John D. Storey <jdstorey@princeton.edu> [aut, cre]",
- "Andrew J. Bass <ajbass@princeton.edu> [aut]",
+ "Andrew J. Bass <ajbass@emory.edu> [aut]",
"Alan Dabney [aut]",
"David Robinson [aut]",
"Gregory Warnes [ctb]"
))
Maintainer: John D. Storey <jstorey@princeton.edu>, Andrew J. Bass
- <ajbass@princeton.edu>
+ <ajbass@emory.edu>
biocViews: MultipleComparisons
Description: This package takes a list of p-values resulting from the
simultaneous testing of many hypotheses and estimates their
@@ -34,12 +34,12 @@ URL: http://github.com/jdstorey/qvalue
License: LGPL
RoxygenNote: 5.0.1
git_url: https://git.bioconductor.org/packages/qvalue
-git_branch: RELEASE_3_16
-git_last_commit: e8a4c22
-git_last_commit_date: 2022-11-01
-Date/Publication: 2022-11-01
+git_branch: RELEASE_3_17
+git_last_commit: a6272dc
+git_last_commit_date: 2023-04-25
+Date/Publication: 2023-04-25
NeedsCompilation: no
-Packaged: 2022-11-01 22:38:06 UTC; biocbuild
+Packaged: 2023-04-25 22:20:05 UTC; biocbuild
Author: John D. Storey [aut, cre],
Andrew J. Bass [aut],
Alan Dabney [aut],
diff --git a/R/hist_qvalue.R b/R/hist_qvalue.R
index efb2db6..39e6fde 100644
--- a/R/hist_qvalue.R
+++ b/R/hist_qvalue.R
@@ -67,7 +67,7 @@ hist.qvalue <- function(x, ...) {
# Histogram figure
ggplot(dm, aes_string(x = 'pvals')) +
ggtitle("p-value density histogram") +
- geom_histogram(aes_string(y = '..density..'), colour = "black",
+ geom_histogram(aes(y = after_stat(density)), colour = "black",
fill = "white", binwidth = 0.04, center=0.02) +
coord_cartesian(xlim = c(0, 1)) +
geom_line(aes_string(x = 'pvals', y = 'value', color = 'variable', linetype = 'variable'), size = 1.1) +
diff --git a/build/vignette.rds b/build/vignette.rds
index 8d179d5..3e062d7 100644
Binary files a/build/vignette.rds and b/build/vignette.rds differ
diff --git a/debian/changelog b/debian/changelog
index abf20f6..9d4f946 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+r-bioc-qvalue (2.32.0-1) UNRELEASED; urgency=low
+
+ * New upstream release.
+
+ -- Debian Janitor <janitor@jelmer.uk> Thu, 08 Jun 2023 11:06:45 -0000
+
r-bioc-qvalue (2.30.0-1) unstable; urgency=medium
* New upstream version
diff --git a/inst/doc/qvalue.pdf b/inst/doc/qvalue.pdf
index cdd22e9..81dc9f2 100644
Binary files a/inst/doc/qvalue.pdf and b/inst/doc/qvalue.pdf differ