New Upstream Snapshot - cnvkit
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Historical runs
- quilt-patch-out-of-date: Quilt patch python3compat.patch no longer applies
- quilt-refresh-error: An error occurred refreshing quilt patch python3compat.patch: Applying patch debian/patches/python3compat.patch can't find file to patch at input line 4 Perhaps you used the wrong -p or --strip option? The text leading up to this was: -------------------------- |Description: enable building with Python3 |--- a/test/Makefile |+++ b/test/Makefile -------------------------- No file to patch. Skipping patch. 2 out of 2 hunks ignored patching file test/test_cnvlib.py patching file test/test_genome.py patching file test/test_io.py patching file test/test_r.py can't find file to patch at input line 66 Perhaps you used the wrong -p or --strip option? The text leading up to this was: -------------------------- |--- a/cnvkit.py |+++ b/cnvkit.py -------------------------- No file to patch. Skipping patch. 1 out of 1 hunk ignored can't find file to patch at input line 74 Perhaps you used the wrong -p or --strip option? The text leading up to this was: -------------------------- |--- a/scripts/cnv_annotate.py |+++ b/scripts/cnv_annotate.py -------------------------- No file to patch. Skipping patch. 1 out of 1 hunk ignored can't find file to patch at input line 82 Perhaps you used the wrong -p or --strip option? The text leading up to this was: -------------------------- |--- a/scripts/cnv_updater.py |+++ b/scripts/cnv_updater.py -------------------------- No file to patch. Skipping patch. 1 out of 1 hunk ignored can't find file to patch at input line 90 Perhaps you used the wrong -p or --strip option? The text leading up to this was: -------------------------- |--- a/scripts/guess_baits.py |+++ b/scripts/guess_baits.py -------------------------- No file to patch. Skipping patch. 1 out of 1 hunk ignored can't find file to patch at input line 98 Perhaps you used the wrong -p or --strip option? The text leading up to this was: -------------------------- |--- a/scripts/reference2targets.py |+++ b/scripts/reference2targets.py -------------------------- No file to patch. Skipping patch. 1 out of 1 hunk ignored can't find file to patch at input line 106 Perhaps you used the wrong -p or --strip option? The text leading up to this was: -------------------------- |--- a/scripts/skg_convert.py |+++ b/scripts/skg_convert.py -------------------------- No file to patch. Skipping patch. 1 out of 1 hunk ignored can't find file to patch at input line 114 Perhaps you used the wrong -p or --strip option? The text leading up to this was: -------------------------- |--- a/scripts/cnv_expression_correlate.py |+++ b/scripts/cnv_expression_correlate.py -------------------------- No file to patch. Skipping patch. 1 out of 1 hunk ignored Patch debian/patches/python3compat.patch does not apply (enforce with -f)
- codemod-command-failed: Script ['deb-new-upstream', '--snapshot', '--refresh-patches'] failed to run with code -9
- command-failed: Command 'SCHROOT=unstable-amd64-sbuild PYTHONPATH=/:/code:/code/breezy:/code/dulwich:/code/lintian-brush:/code/ognibuild:/code/silver-platter:/code/buildlog-consultant:/code/upstream-ontologist:/code/debmutate:/code/python-debian/lib:/usr/lib/python39.zip:/usr/lib/python3.9:/usr/lib/python3.9/lib-dynload:/usr/local/lib/python3.9/dist-packages:/usr/lib/python3/dist-packages /usr/bin/python3 -m janitor.dist --packaging=/tmp/janitoryolj3frv/cnvkit/debian' returned non-zero exit status 1.