New Upstream Snapshot - libbio-tools-run-alignment-tcoffee-perl
Ready changes
Summary
Merged new upstream version: 1.7.4+git20180710.1.726458d (was: 1.7.4).
Resulting package
Built on 2022-10-14T15:55 (took 13m7s)
The resulting binary packages can be installed (if you have the apt repository enabled) by running one of:
apt install -t fresh-snapshots libbio-tools-run-alignment-tcoffee-perl
Lintian Result
- libbio-tools-run-alignment-tcoffee-perl_1.7.4+git20180710.1.726458d-1~jan+nus2.dsc
- libbio-tools-run-alignment-tcoffee-perl_1.7.4+git20180710.1.726458d-1~jan+nus2_all.deb
- libbio-tools-run-alignment-tcoffee-perl_1.7.4+git20180710.1.726458d-1~jan+nus2_amd64.buildinfo
- libbio-tools-run-alignment-tcoffee-perl_1.7.4+git20180710.1.726458d-1~jan+nus2_amd64.changes
Diff
diff --git a/Changes b/Changes
index de61f1a..da2aea1 100644
--- a/Changes
+++ b/Changes
@@ -1,6 +1,8 @@
Summary of important user-visible changes for Bio-Tools-Run-Alignment-TCoffee
-----------------------------------------------------------------------------
+1.7.4 2022-10-14 15:51:58+00:00 UTC
+
1.7.4 2018-07-09 19:30:49+01:00 Europe/London
* Bio::Installer::TCoffee has been removed. Not only did it no
diff --git a/LICENSE b/LICENSE
index 184cb19..f21856e 100644
--- a/LICENSE
+++ b/LICENSE
@@ -1,4 +1,4 @@
-This software is copyright (c) 2018 by Jason Stajich <jason@bioperl.org>, Peter Schattner <schattner@alum.mit.edu>.
+This software is copyright (c) 2022 by Jason Stajich <jason@bioperl.org>, Peter Schattner <schattner@alum.mit.edu>.
This is free software; you can redistribute it and/or modify it under
the same terms as the Perl 5 programming language system itself.
@@ -12,7 +12,7 @@ b) the "Artistic License"
--- The GNU General Public License, Version 1, February 1989 ---
-This software is Copyright (c) 2018 by Jason Stajich <jason@bioperl.org>, Peter Schattner <schattner@alum.mit.edu>.
+This software is Copyright (c) 2022 by Jason Stajich <jason@bioperl.org>, Peter Schattner <schattner@alum.mit.edu>.
This is free software, licensed under:
@@ -272,7 +272,7 @@ That's all there is to it!
--- The Artistic License 1.0 ---
-This software is Copyright (c) 2018 by Jason Stajich <jason@bioperl.org>, Peter Schattner <schattner@alum.mit.edu>.
+This software is Copyright (c) 2022 by Jason Stajich <jason@bioperl.org>, Peter Schattner <schattner@alum.mit.edu>.
This is free software, licensed under:
@@ -292,21 +292,21 @@ Definitions:
- "Package" refers to the collection of files distributed by the Copyright
Holder, and derivatives of that collection of files created through
- textual modification.
+ textual modification.
- "Standard Version" refers to such a Package if it has not been modified,
or has been modified in accordance with the wishes of the Copyright
- Holder.
+ Holder.
- "Copyright Holder" is whoever is named in the copyright or copyrights for
- the package.
+ the package.
- "You" is you, if you're thinking about copying or distributing this Package.
- "Reasonable copying fee" is whatever you can justify on the basis of media
cost, duplication charges, time of people involved, and so on. (You will
not be required to justify it to the Copyright Holder, but only to the
- computing community at large as a market that must bear the fee.)
+ computing community at large as a market that must bear the fee.)
- "Freely Available" means that no fee is charged for the item itself, though
there may be fees involved in handling the item. It also means that
recipients of the item may redistribute it under the same conditions they
- received it.
+ received it.
1. You may make and give away verbatim copies of the source form of the
Standard Version of this Package without restriction, provided that you
@@ -373,7 +373,7 @@ products derived from this software without specific prior written permission.
9. THIS PACKAGE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR IMPLIED
WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF
-MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE.
+MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
The End
diff --git a/MANIFEST b/MANIFEST
index 6562986..953dc87 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -1,4 +1,4 @@
-# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.012.
+# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.025.
Changes
LICENSE
MANIFEST
diff --git a/META.json b/META.json
index b3f324b..c0a61bb 100644
--- a/META.json
+++ b/META.json
@@ -5,7 +5,7 @@
"Peter Schattner <schattner@alum.mit.edu>"
],
"dynamic_config" : 0,
- "generated_by" : "Dist::Zilla version 6.012, CPAN::Meta::Converter version 2.150010",
+ "generated_by" : "Dist::Zilla version 6.025, CPAN::Meta::Converter version 2.150010",
"license" : [
"perl_5"
],
@@ -75,7 +75,7 @@
"version" : "1.7.4",
"x_Dist_Zilla" : {
"perl" : {
- "version" : "5.026002"
+ "version" : "5.034000"
},
"plugins" : [
{
@@ -92,42 +92,42 @@
}
},
"name" : "@BioPerl/@Filter/GatherDir",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::PruneCruft",
"name" : "@BioPerl/@Filter/PruneCruft",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::ManifestSkip",
"name" : "@BioPerl/@Filter/ManifestSkip",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::MetaYAML",
"name" : "@BioPerl/@Filter/MetaYAML",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::License",
"name" : "@BioPerl/@Filter/License",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::ExtraTests",
"name" : "@BioPerl/@Filter/ExtraTests",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::ExecDir",
"name" : "@BioPerl/@Filter/ExecDir",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::ShareDir",
"name" : "@BioPerl/@Filter/ShareDir",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::MakeMaker",
@@ -137,47 +137,47 @@
}
},
"name" : "@BioPerl/@Filter/MakeMaker",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::Manifest",
"name" : "@BioPerl/@Filter/Manifest",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::TestRelease",
"name" : "@BioPerl/@Filter/TestRelease",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::ConfirmRelease",
"name" : "@BioPerl/@Filter/ConfirmRelease",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::UploadToCPAN",
"name" : "@BioPerl/@Filter/UploadToCPAN",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::MetaConfig",
"name" : "@BioPerl/MetaConfig",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::MetaJSON",
"name" : "@BioPerl/MetaJSON",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::PkgVersion",
"name" : "@BioPerl/PkgVersion",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::PodSyntaxTests",
"name" : "@BioPerl/PodSyntaxTests",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::Test::NoTabs",
@@ -220,7 +220,7 @@
{
"class" : "Dist::Zilla::Plugin::PodCoverageTests",
"name" : "@BioPerl/PodCoverageTests",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::MojibakeTests",
@@ -230,7 +230,7 @@
{
"class" : "Dist::Zilla::Plugin::AutoPrereqs",
"name" : "@BioPerl/AutoPrereqs",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::AutoMetaResources",
@@ -240,7 +240,7 @@
{
"class" : "Dist::Zilla::Plugin::MetaResources",
"name" : "@BioPerl/MetaResources",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::Test::EOL",
@@ -261,7 +261,7 @@
{
"class" : "Dist::Zilla::Plugin::Encoding",
"name" : "@BioPerl/Encoding",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::PodWeaver",
@@ -278,97 +278,97 @@
{
"class" : "Pod::Weaver::Plugin::EnsurePod5",
"name" : "@CorePrep/EnsurePod5",
- "version" : "4.015"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Plugin::H1Nester",
"name" : "@CorePrep/H1Nester",
- "version" : "4.015"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Section::Name",
"name" : "@BioPerl/Name",
- "version" : "4.015"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Section::Version",
"name" : "@BioPerl/Version",
- "version" : "4.015"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Section::Region",
"name" : "@BioPerl/prelude",
- "version" : "4.015"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Section::Generic",
"name" : "SYNOPSIS",
- "version" : "4.015"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Section::Generic",
"name" : "DESCRIPTION",
- "version" : "4.015"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Section::Generic",
"name" : "OVERVIEW",
- "version" : "4.015"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Section::Collect",
"name" : "ATTRIBUTES",
- "version" : "4.015"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Section::Collect",
"name" : "METHODS",
- "version" : "4.015"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Section::Collect",
"name" : "FUNCTIONS",
- "version" : "4.015"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Section::Collect",
"name" : "INTERNAL METHODS",
- "version" : "4.015"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Section::Leftovers",
"name" : "@BioPerl/Leftovers",
- "version" : "4.015"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Section::Region",
"name" : "@BioPerl/postlude",
- "version" : "4.015"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Section::GenerateSection",
"name" : "FEEDBACK",
- "version" : "1.06"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Section::GenerateSection",
"name" : "Mailing lists",
- "version" : "1.06"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Section::GenerateSection",
"name" : "Support",
- "version" : "1.06"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Section::GenerateSection",
"name" : "Reporting bugs",
- "version" : "1.06"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Section::Legal::Complicated",
"name" : "@BioPerl/Legal",
- "version" : "1.22"
+ "version" : "1.23"
},
{
"class" : "Pod::Weaver::Section::Contributors",
@@ -378,12 +378,12 @@
{
"class" : "Pod::Weaver::Plugin::SingleEncoding",
"name" : "SingleEncoding",
- "version" : "4.015"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Plugin::Transformer",
"name" : "@BioPerl/List",
- "version" : "4.015"
+ "version" : "4.018"
},
{
"class" : "Pod::Weaver::Plugin::EnsureUniqueSections",
@@ -394,12 +394,12 @@
}
},
"name" : "@BioPerl/PodWeaver",
- "version" : "4.008"
+ "version" : "4.009"
},
{
"class" : "Dist::Zilla::Plugin::NextRelease",
"name" : "@BioPerl/NextRelease",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::Git::Check",
@@ -416,19 +416,20 @@
"changelog" : "Changes"
},
"Dist::Zilla::Role::Git::Repo" : {
- "git_version" : "2.18.0",
+ "git_version" : "2.37.2",
"repo_root" : "."
}
},
"name" : "@BioPerl/Git::Check",
- "version" : "2.043"
+ "version" : "2.048"
},
{
"class" : "Dist::Zilla::Plugin::Git::Commit",
"config" : {
"Dist::Zilla::Plugin::Git::Commit" : {
"add_files_in" : [],
- "commit_msg" : "v%v%n%n%c"
+ "commit_msg" : "v%V%n%n%c",
+ "signoff" : 0
},
"Dist::Zilla::Role::Git::DirtyFiles" : {
"allow_dirty" : [
@@ -439,7 +440,7 @@
"changelog" : "Changes"
},
"Dist::Zilla::Role::Git::Repo" : {
- "git_version" : "2.18.0",
+ "git_version" : "2.37.2",
"repo_root" : "."
},
"Dist::Zilla::Role::Git::StringFormatter" : {
@@ -447,7 +448,7 @@
}
},
"name" : "@BioPerl/Git::Commit",
- "version" : "2.043"
+ "version" : "2.048"
},
{
"class" : "Dist::Zilla::Plugin::Git::Tag",
@@ -461,7 +462,7 @@
"tag_message" : "%N-v%v"
},
"Dist::Zilla::Role::Git::Repo" : {
- "git_version" : "2.18.0",
+ "git_version" : "2.37.2",
"repo_root" : "."
},
"Dist::Zilla::Role::Git::StringFormatter" : {
@@ -469,7 +470,7 @@
}
},
"name" : "@BioPerl/Git::Tag",
- "version" : "2.043"
+ "version" : "2.048"
},
{
"class" : "Dist::Zilla::Plugin::CheckBin",
@@ -486,52 +487,52 @@
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":InstallModules",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":IncModules",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":TestFiles",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":ExtraTestFiles",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":ExecFiles",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":PerlExecFiles",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":ShareFiles",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":MainModule",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":AllFiles",
- "version" : "6.012"
+ "version" : "6.025"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":NoFiles",
- "version" : "6.012"
+ "version" : "6.025"
}
],
"zilla" : {
@@ -539,10 +540,11 @@
"config" : {
"is_trial" : 0
},
- "version" : "6.012"
+ "version" : "6.025"
}
},
- "x_generated_by_perl" : "v5.26.2",
- "x_serialization_backend" : "Cpanel::JSON::XS version 4.02"
+ "x_generated_by_perl" : "v5.34.0",
+ "x_serialization_backend" : "Cpanel::JSON::XS version 4.32",
+ "x_spdx_expression" : "Artistic-1.0-Perl OR GPL-1.0-or-later"
}
diff --git a/META.yml b/META.yml
index fd8408e..85ccfab 100644
--- a/META.yml
+++ b/META.yml
@@ -14,7 +14,7 @@ configure_requires:
Devel::CheckBin: '0'
ExtUtils::MakeMaker: '0'
dynamic_config: 0
-generated_by: 'Dist::Zilla version 6.012, CPAN::Meta::Converter version 2.150010'
+generated_by: 'Dist::Zilla version 6.025, CPAN::Meta::Converter version 2.150010'
license: perl
meta-spec:
url: http://module-build.sourceforge.net/META-spec-v1.4.html
@@ -40,7 +40,7 @@ resources:
version: 1.7.4
x_Dist_Zilla:
perl:
- version: '5.026002'
+ version: '5.034000'
plugins:
-
class: Dist::Zilla::Plugin::GatherDir
@@ -54,74 +54,74 @@ x_Dist_Zilla:
prune_directory: []
root: .
name: '@BioPerl/@Filter/GatherDir'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::PruneCruft
name: '@BioPerl/@Filter/PruneCruft'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::ManifestSkip
name: '@BioPerl/@Filter/ManifestSkip'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::MetaYAML
name: '@BioPerl/@Filter/MetaYAML'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::License
name: '@BioPerl/@Filter/License'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::ExtraTests
name: '@BioPerl/@Filter/ExtraTests'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::ExecDir
name: '@BioPerl/@Filter/ExecDir'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::ShareDir
name: '@BioPerl/@Filter/ShareDir'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::MakeMaker
config:
Dist::Zilla::Role::TestRunner:
default_jobs: 1
name: '@BioPerl/@Filter/MakeMaker'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::Manifest
name: '@BioPerl/@Filter/Manifest'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::TestRelease
name: '@BioPerl/@Filter/TestRelease'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::ConfirmRelease
name: '@BioPerl/@Filter/ConfirmRelease'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::UploadToCPAN
name: '@BioPerl/@Filter/UploadToCPAN'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::MetaConfig
name: '@BioPerl/MetaConfig'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::MetaJSON
name: '@BioPerl/MetaJSON'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::PkgVersion
name: '@BioPerl/PkgVersion'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::PodSyntaxTests
name: '@BioPerl/PodSyntaxTests'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::Test::NoTabs
config:
@@ -154,7 +154,7 @@ x_Dist_Zilla:
-
class: Dist::Zilla::Plugin::PodCoverageTests
name: '@BioPerl/PodCoverageTests'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::MojibakeTests
name: '@BioPerl/MojibakeTests'
@@ -162,7 +162,7 @@ x_Dist_Zilla:
-
class: Dist::Zilla::Plugin::AutoPrereqs
name: '@BioPerl/AutoPrereqs'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::AutoMetaResources
name: '@BioPerl/AutoMetaResources'
@@ -170,7 +170,7 @@ x_Dist_Zilla:
-
class: Dist::Zilla::Plugin::MetaResources
name: '@BioPerl/MetaResources'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::Test::EOL
config:
@@ -186,7 +186,7 @@ x_Dist_Zilla:
-
class: Dist::Zilla::Plugin::Encoding
name: '@BioPerl/Encoding'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::PodWeaver
config:
@@ -200,79 +200,79 @@ x_Dist_Zilla:
-
class: Pod::Weaver::Plugin::EnsurePod5
name: '@CorePrep/EnsurePod5'
- version: '4.015'
+ version: '4.018'
-
class: Pod::Weaver::Plugin::H1Nester
name: '@CorePrep/H1Nester'
- version: '4.015'
+ version: '4.018'
-
class: Pod::Weaver::Section::Name
name: '@BioPerl/Name'
- version: '4.015'
+ version: '4.018'
-
class: Pod::Weaver::Section::Version
name: '@BioPerl/Version'
- version: '4.015'
+ version: '4.018'
-
class: Pod::Weaver::Section::Region
name: '@BioPerl/prelude'
- version: '4.015'
+ version: '4.018'
-
class: Pod::Weaver::Section::Generic
name: SYNOPSIS
- version: '4.015'
+ version: '4.018'
-
class: Pod::Weaver::Section::Generic
name: DESCRIPTION
- version: '4.015'
+ version: '4.018'
-
class: Pod::Weaver::Section::Generic
name: OVERVIEW
- version: '4.015'
+ version: '4.018'
-
class: Pod::Weaver::Section::Collect
name: ATTRIBUTES
- version: '4.015'
+ version: '4.018'
-
class: Pod::Weaver::Section::Collect
name: METHODS
- version: '4.015'
+ version: '4.018'
-
class: Pod::Weaver::Section::Collect
name: FUNCTIONS
- version: '4.015'
+ version: '4.018'
-
class: Pod::Weaver::Section::Collect
name: 'INTERNAL METHODS'
- version: '4.015'
+ version: '4.018'
-
class: Pod::Weaver::Section::Leftovers
name: '@BioPerl/Leftovers'
- version: '4.015'
+ version: '4.018'
-
class: Pod::Weaver::Section::Region
name: '@BioPerl/postlude'
- version: '4.015'
+ version: '4.018'
-
class: Pod::Weaver::Section::GenerateSection
name: FEEDBACK
- version: '1.06'
+ version: '4.018'
-
class: Pod::Weaver::Section::GenerateSection
name: 'Mailing lists'
- version: '1.06'
+ version: '4.018'
-
class: Pod::Weaver::Section::GenerateSection
name: Support
- version: '1.06'
+ version: '4.018'
-
class: Pod::Weaver::Section::GenerateSection
name: 'Reporting bugs'
- version: '1.06'
+ version: '4.018'
-
class: Pod::Weaver::Section::Legal::Complicated
name: '@BioPerl/Legal'
- version: '1.22'
+ version: '1.23'
-
class: Pod::Weaver::Section::Contributors
name: '@BioPerl/Contributors'
@@ -280,21 +280,21 @@ x_Dist_Zilla:
-
class: Pod::Weaver::Plugin::SingleEncoding
name: SingleEncoding
- version: '4.015'
+ version: '4.018'
-
class: Pod::Weaver::Plugin::Transformer
name: '@BioPerl/List'
- version: '4.015'
+ version: '4.018'
-
class: Pod::Weaver::Plugin::EnsureUniqueSections
name: EnsureUniqueSections
version: '0.163250'
name: '@BioPerl/PodWeaver'
- version: '4.008'
+ version: '4.009'
-
class: Dist::Zilla::Plugin::NextRelease
name: '@BioPerl/NextRelease'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::Git::Check
config:
@@ -307,16 +307,17 @@ x_Dist_Zilla:
allow_dirty_match: []
changelog: Changes
Dist::Zilla::Role::Git::Repo:
- git_version: 2.18.0
+ git_version: 2.37.2
repo_root: .
name: '@BioPerl/Git::Check'
- version: '2.043'
+ version: '2.048'
-
class: Dist::Zilla::Plugin::Git::Commit
config:
Dist::Zilla::Plugin::Git::Commit:
add_files_in: []
- commit_msg: v%v%n%n%c
+ commit_msg: v%V%n%n%c
+ signoff: 0
Dist::Zilla::Role::Git::DirtyFiles:
allow_dirty:
- Changes
@@ -324,12 +325,12 @@ x_Dist_Zilla:
allow_dirty_match: []
changelog: Changes
Dist::Zilla::Role::Git::Repo:
- git_version: 2.18.0
+ git_version: 2.37.2
repo_root: .
Dist::Zilla::Role::Git::StringFormatter:
time_zone: local
name: '@BioPerl/Git::Commit'
- version: '2.043'
+ version: '2.048'
-
class: Dist::Zilla::Plugin::Git::Tag
config:
@@ -341,12 +342,12 @@ x_Dist_Zilla:
tag_format: '%N-v%v'
tag_message: '%N-v%v'
Dist::Zilla::Role::Git::Repo:
- git_version: 2.18.0
+ git_version: 2.37.2
repo_root: .
Dist::Zilla::Role::Git::StringFormatter:
time_zone: local
name: '@BioPerl/Git::Tag'
- version: '2.043'
+ version: '2.048'
-
class: Dist::Zilla::Plugin::CheckBin
config:
@@ -358,47 +359,48 @@ x_Dist_Zilla:
-
class: Dist::Zilla::Plugin::FinderCode
name: ':InstallModules'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':IncModules'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':TestFiles'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':ExtraTestFiles'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':ExecFiles'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':PerlExecFiles'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':ShareFiles'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':MainModule'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':AllFiles'
- version: '6.012'
+ version: '6.025'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':NoFiles'
- version: '6.012'
+ version: '6.025'
zilla:
class: Dist::Zilla::Dist::Builder
config:
is_trial: '0'
- version: '6.012'
-x_generated_by_perl: v5.26.2
+ version: '6.025'
+x_generated_by_perl: v5.34.0
x_serialization_backend: 'YAML::Tiny version 1.73'
+x_spdx_expression: 'Artistic-1.0-Perl OR GPL-1.0-or-later'
diff --git a/Makefile.PL b/Makefile.PL
index 6ed87f4..283e080 100644
--- a/Makefile.PL
+++ b/Makefile.PL
@@ -1,4 +1,4 @@
-# This file was automatically generated by Dist::Zilla::Plugin::MakeMaker v6.012.
+# This file was automatically generated by Dist::Zilla::Plugin::MakeMaker v6.025.
use strict;
use warnings;
diff --git a/debian/changelog b/debian/changelog
index d3bf6f4..749fc66 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+libbio-tools-run-alignment-tcoffee-perl (1.7.4+git20180710.1.726458d-1) UNRELEASED; urgency=low
+
+ * New upstream snapshot.
+ * Drop patch doc-typos.patch, present upstream.
+
+ -- Debian Janitor <janitor@jelmer.uk> Fri, 14 Oct 2022 15:52:10 -0000
+
libbio-tools-run-alignment-tcoffee-perl (1.7.4-3) unstable; urgency=medium
[ Debian Janitor ]
diff --git a/debian/patches/doc-typos.patch b/debian/patches/doc-typos.patch
deleted file mode 100644
index e57b2ca..0000000
--- a/debian/patches/doc-typos.patch
+++ /dev/null
@@ -1,15 +0,0 @@
-Description: fix typos on POD documentation
-Author: David Miguel Susano Pinto <carandraug+dev@gmail.com>
-Forwarded: yes
-Applied-Upstream: commit:726458dc1bb5cd28dd41c2aaa2ef3cbc68f5dc57
---- a/lib/Bio/Tools/Run/Alignment/TCoffee.pm
-+++ b/lib/Bio/Tools/Run/Alignment/TCoffee.pm
-@@ -647,7 +647,7 @@
- to 0 then extension is not made, if set to 1 extension
- is made on all pairs in the library. If extension is
- set to another positive value, the extension is only
-- carried out on pairs having a weigth value superior to
-+ carried out on pairs having a weight value superior to
- the specified limit.
-
- =head2 DP_NORMALISE
diff --git a/debian/patches/series b/debian/patches/series
index 46ed326..e69de29 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1 +0,0 @@
-doc-typos.patch
diff --git a/lib/Bio/Tools/Run/Alignment/TCoffee.pm b/lib/Bio/Tools/Run/Alignment/TCoffee.pm
index 818d9e1..7abe08f 100644
--- a/lib/Bio/Tools/Run/Alignment/TCoffee.pm
+++ b/lib/Bio/Tools/Run/Alignment/TCoffee.pm
@@ -647,7 +647,7 @@ object, or through get/set methods of the same name (lowercase).
to 0 then extension is not made, if set to 1 extension
is made on all pairs in the library. If extension is
set to another positive value, the extension is only
- carried out on pairs having a weigth value superior to
+ carried out on pairs having a weight value superior to
the specified limit.
=head2 DP_NORMALISE
@@ -1180,14 +1180,13 @@ User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
- bioperl-l@bioperl.org - General discussion
- http://bioperl.org/Support.html - About the mailing lists
+ bioperl-l@bioperl.org - General discussion
+ https://bioperl.org/Support.html - About the mailing lists
=head2 Support
Please direct usage questions or support issues to the mailing list:
I<bioperl-l@bioperl.org>
-
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
Debdiff
File lists identical (after any substitutions)
No differences were encountered in the control files