Running 'sbuild -A -s -v' Building using working tree Building package in normal mode Looking for a way to retrieve the upstream tarball RemoteApt('http://deb.debian.org/debian', distribution='sid', components=['main'], key_path=None) could not find libbio-variation-perl/1.7.5+git20200108.1.fde2830. Looking for upstream tarball in local branch. Using pristine-tar to reconstruct libbio-variation-perl/1.7.5+git20200108.1.fde2830. pristine-tar: successfully generated /tmp/janitor-workera743qwcj/libbio-variation-perl_1.7.5+git20200108.1.fde2830.orig.tar.gz Building the package in /tmp/janitor-workera743qwcj/build-area/libbio-variation-perl-1.7.5+git20200108.1.fde2830, using sbuild -A -s -v --extra-repository='deb [trusted=yes] https://janitor.debian.net/ unchanged main' --extra-repository='deb [trusted=yes] https://janitor.debian.net/ fresh-releases main' --extra-repository='deb [trusted=yes] https://janitor.debian.net/ fresh-snapshots main' dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbio-variation-perl using existing ./libbio-variation-perl_1.7.5+git20200108.1.fde2830.orig.tar.gz dpkg-source: info: building libbio-variation-perl in libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.debian.tar.xz dpkg-source: info: building libbio-variation-perl in libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.dsc sbuild (Debian sbuild) 0.85.0 (04 January 2023) on workers-z4lq.europe-west4-a.c.debian-janitor.internal +======================================================================================================+ | libbio-variation-perl 1.7.5+git20200108.1.fde2830-1~jan+nus2 (amd64) Thu, 19 Jan 2023 11:35:21 +0000 | +======================================================================================================+ Package: libbio-variation-perl Version: 1.7.5+git20200108.1.fde2830-1~jan+nus2 Source Version: 1.7.5+git20200108.1.fde2830-1~jan+nus2 Distribution: fresh-snapshots Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-1e2b4b03-85eb-4756-a48f-786f94ad8662' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-variation-perl-3yM5JN/resolver-pXL79K' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://deb.debian.org/debian sid InRelease [161 kB] Get:2 https://janitor.debian.net unchanged InRelease [3677 B] Get:3 https://janitor.debian.net fresh-releases InRelease [3697 B] Get:4 https://janitor.debian.net fresh-snapshots InRelease [3700 B] Get:5 http://deb.debian.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 https://janitor.debian.net unchanged InRelease Get:6 http://deb.debian.org/debian sid/main amd64 Packages.diff/Index [63.6 kB] Ign:3 https://janitor.debian.net fresh-releases InRelease Get:7 https://janitor.debian.net unchanged/main amd64 Packages [6406 kB] Get:8 http://deb.debian.org/debian sid/main Sources T-2023-01-19-0818.11-F-2023-01-19-0818.11.pdiff [20.4 kB] Get:8 http://deb.debian.org/debian sid/main Sources T-2023-01-19-0818.11-F-2023-01-19-0818.11.pdiff [20.4 kB] Get:9 http://deb.debian.org/debian sid/main amd64 Packages T-2023-01-19-0818.11-F-2023-01-19-0818.11.pdiff [3612 B] Get:10 https://janitor.debian.net fresh-releases/main amd64 Packages [959 kB] Get:9 http://deb.debian.org/debian sid/main amd64 Packages T-2023-01-19-0818.11-F-2023-01-19-0818.11.pdiff [3612 B] Ign:4 https://janitor.debian.net fresh-snapshots InRelease Get:11 https://janitor.debian.net fresh-snapshots/main amd64 Packages [2413 kB] Fetched 10.1 MB in 5s (1884 kB/s) Reading package lists... W: GPG error: https://janitor.debian.net unchanged InRelease: The following signatures were invalid: EXPKEYSIG 6F915003D1998D6A Debian Janitor W: GPG error: https://janitor.debian.net fresh-releases InRelease: The following signatures were invalid: EXPKEYSIG 6F915003D1998D6A Debian Janitor W: GPG error: https://janitor.debian.net fresh-snapshots InRelease: The following signatures were invalid: EXPKEYSIG 6F915003D1998D6A Debian Janitor Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /tmp/janitor-workera743qwcj/build-area/libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.dsc exists in /tmp/janitor-workera743qwcj/build-area; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-variation-perl-3yM5JN/libbio-variation-perl-1.7.5+git20200108.1.fde2830' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-variation-perl-3yM5JN' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, perl, libbio-perl-perl, libtest-most-perl, libbio-db-embl-perl, libio-string-perl, libxml-twig-perl, libxml-writer-perl Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, perl, libbio-perl-perl, libtest-most-perl, libbio-db-embl-perl, libio-string-perl, libxml-twig-perl, libxml-writer-perl dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [758 B] Get:5 copy:/<>/apt_archive ./ Packages [770 B] Fetched 2137 B in 0s (0 B/s) Reading package lists... Get:1 https://janitor.debian.net unchanged InRelease [3677 B] Get:2 https://janitor.debian.net fresh-releases InRelease [3697 B] Get:3 https://janitor.debian.net fresh-snapshots InRelease [3700 B] Ign:1 https://janitor.debian.net unchanged InRelease Ign:2 https://janitor.debian.net fresh-releases InRelease Ign:3 https://janitor.debian.net fresh-snapshots InRelease Fetched 11.1 kB in 0s (29.2 kB/s) Reading package lists... W: GPG error: https://janitor.debian.net unchanged InRelease: The following signatures were invalid: EXPKEYSIG 6F915003D1998D6A Debian Janitor W: GPG error: https://janitor.debian.net fresh-releases InRelease: The following signatures were invalid: EXPKEYSIG 6F915003D1998D6A Debian Janitor W: GPG error: https://janitor.debian.net fresh-snapshots InRelease: The following signatures were invalid: EXPKEYSIG 6F915003D1998D6A Debian Janitor Reading package lists... +------------------------------------------------------------------------------+ | Install main build dependencies (aspcud-based resolver) | +------------------------------------------------------------------------------+ Reading package lists... Building dependency tree... The following additional packages will be installed: clasp gringo libexpat1 liblua5.4-0 libmpdec3 libncursesw6 libpython3.11 libpython3.11-minimal libpython3.11-stdlib libreadline8 libsqlite3-0 media-types readline-common Suggested packages: readline-doc Recommended packages: libgpm2 The following NEW packages will be installed: apt-cudf aspcud clasp gringo libexpat1 liblua5.4-0 libmpdec3 libncursesw6 libpython3.11 libpython3.11-minimal libpython3.11-stdlib libreadline8 libsqlite3-0 media-types readline-common 0 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. Need to get 9758 kB of archives. After this operation, 43.2 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:2 http://deb.debian.org/debian sid/main amd64 media-types all 8.0.0 [33.4 kB] Get:3 http://deb.debian.org/debian sid/main amd64 liblua5.4-0 amd64 5.4.4-3 [137 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.1-2 [812 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4-1 [134 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.40.1-1 [838 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.1-2 [1712 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libpython3.11 amd64 3.11.1-2 [1987 kB] Get:12 http://deb.debian.org/debian sid/main amd64 gringo amd64 5.4.1-3.1+b1 [1888 kB] Get:13 http://deb.debian.org/debian sid/main amd64 clasp amd64 3.3.5-4.2 [629 kB] Get:14 http://deb.debian.org/debian sid/main amd64 aspcud amd64 1:1.9.6-2 [126 kB] Get:15 http://deb.debian.org/debian sid/main amd64 apt-cudf amd64 7.0.0-1+b1 [1038 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9758 kB in 0s (39.6 MB/s) Selecting previously unselected package readline-common. (Reading database ... 12574 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_8.0.0_all.deb ... Unpacking media-types (8.0.0) ... Selecting previously unselected package liblua5.4-0:amd64. Preparing to unpack .../02-liblua5.4-0_5.4.4-3_amd64.deb ... Unpacking liblua5.4-0:amd64 (5.4.4-3) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../03-libpython3.11-minimal_3.11.1-2_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.1-2) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../04-libmpdec3_2.5.1-2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../05-libncursesw6_6.4-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.4-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../06-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.40.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.40.1-1) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../08-libpython3.11-stdlib_3.11.1-2_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.1-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../09-libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package libpython3.11:amd64. Preparing to unpack .../10-libpython3.11_3.11.1-2_amd64.deb ... Unpacking libpython3.11:amd64 (3.11.1-2) ... Selecting previously unselected package gringo. Preparing to unpack .../11-gringo_5.4.1-3.1+b1_amd64.deb ... Unpacking gringo (5.4.1-3.1+b1) ... Selecting previously unselected package clasp. Preparing to unpack .../12-clasp_3.3.5-4.2_amd64.deb ... Unpacking clasp (3.3.5-4.2) ... Selecting previously unselected package aspcud. Preparing to unpack .../13-aspcud_1%3a1.9.6-2_amd64.deb ... Unpacking aspcud (1:1.9.6-2) ... Selecting previously unselected package apt-cudf. Preparing to unpack .../14-apt-cudf_7.0.0-1+b1_amd64.deb ... Unpacking apt-cudf (7.0.0-1+b1) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up media-types (8.0.0) ... Setting up clasp (3.3.5-4.2) ... Setting up libsqlite3-0:amd64 (3.40.1-1) ... Setting up libncursesw6:amd64 (6.4-1) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up liblua5.4-0:amd64 (5.4.4-3) ... Setting up libpython3.11-minimal:amd64 (3.11.1-2) ... Setting up readline-common (8.2-1.3) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libpython3.11-stdlib:amd64 (3.11.1-2) ... Setting up libpython3.11:amd64 (3.11.1-2) ... Setting up gringo (5.4.1-3.1+b1) ... Setting up aspcud (1:1.9.6-2) ... Setting up apt-cudf (7.0.0-1+b1) ... Processing triggers for libc-bin (2.36-8) ... Installing build dependencies Reading package lists... Building dependency tree... Reading state information... (W)apt-cudf backend: Duplicated package (same version, name and architecture) : (ksh,20220829,all) Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-db-embl-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1 libencode-locale-perl libexception-class-perl libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libnet-http-perl libnet-ssleay-perl libpipeline1 libregexp-ipv6-perl libsub-override-perl libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml-twig-perl libxml-writer-perl libxml2 m4 man-db netbase perl-openssl-defaults po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libdata-dump-perl libcrypt-ssleay-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libsub-name-perl libbusiness-isbn-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-libxml-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libhtml-format-perl libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libtext-iconv-perl libtie-ixhash-perl libxml-xpathengine-perl | libxml-xpath-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-db-embl-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1 libencode-locale-perl libexception-class-perl libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libnet-http-perl libnet-ssleay-perl libpipeline1 libregexp-ipv6-perl libsub-override-perl libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml-twig-perl libxml-writer-perl libxml2 m4 man-db netbase perl-openssl-defaults po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 23.9 MB of archives. After this operation, 88.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B] Get:2 http://deb.debian.org/debian sid/main amd64 bsdextrautils amd64 2.38.1-4 [86.2 kB] Get:3 https://janitor.debian.net unchanged/main amd64 libuchardet0 amd64 0.0.7-1~jan+unchanged1 [68.3 kB] Get:4 http://deb.debian.org/debian sid/main amd64 groff-base amd64 1.22.4-9 [916 kB] Get:5 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:6 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libmagic-mgc amd64 1:5.44-2 [305 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libmagic1 amd64 1:5.44-2 [104 kB] Get:9 http://deb.debian.org/debian sid/main amd64 file amd64 1:5.44-2 [42.4 kB] Get:10 http://deb.debian.org/debian sid/main amd64 gettext-base amd64 0.21-10 [160 kB] Get:11 http://deb.debian.org/debian sid/main amd64 m4 amd64 1.4.19-2 [287 kB] Get:12 http://deb.debian.org/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:13 http://deb.debian.org/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:14 https://janitor.debian.net unchanged/main amd64 libpipeline1 amd64 1.5.6-3~jan+unchanged1 [39.5 kB] Get:15 https://janitor.debian.net unchanged/main amd64 man-db amd64 2.10.2-3~jan+unchanged1 [1330 kB] Get:16 https://janitor.debian.net unchanged/main amd64 libdebhelper-perl all 13.10~jan+unchanged2 [79.1 kB] Get:17 https://janitor.debian.net unchanged/main amd64 libtool all 2.4.6-15~jan+unchanged2 [514 kB] Get:18 https://janitor.debian.net fresh-snapshots/main amd64 libarchive-zip-perl all 1.68+git20210106.1.2385b67-1~jan+nus1 [104 kB] Get:19 https://janitor.debian.net unchanged/main amd64 intltool-debian all 0.35.0+20060710.5~jan+unchanged1 [26.8 kB] Get:20 https://janitor.debian.net unchanged/main amd64 debhelper all 13.10~jan+unchanged2 [953 kB] Get:21 http://deb.debian.org/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:22 http://deb.debian.org/debian sid/main amd64 autopoint all 0.21-10 [495 kB] Get:23 http://deb.debian.org/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:25 http://deb.debian.org/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:26 http://deb.debian.org/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:27 http://deb.debian.org/debian sid/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get:28 http://deb.debian.org/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:29 https://janitor.debian.net fresh-snapshots/main amd64 libbio-perl-perl all 1.7.8+git20220912.1.4c9acbe-1~jan+nus1 [2604 kB] Get:30 https://janitor.debian.net unchanged/main amd64 liburi-perl all 5.12-1~jan+unchanged1 [93.8 kB] Get:31 https://janitor.debian.net unchanged/main amd64 libhttp-message-perl all 6.36-1~jan+unchanged1 [80.7 kB] Get:32 https://janitor.debian.net unchanged/main amd64 libfile-listing-perl all 6.15-1~jan+unchanged1 [12.6 kB] Get:33 https://janitor.debian.net unchanged/main amd64 libhtml-tagset-perl all 3.20-5~jan+unchanged3 [13.2 kB] Get:34 https://janitor.debian.net unchanged/main amd64 libio-socket-ssl-perl all 2.075-1~jan+unchanged1 [221 kB] Get:35 https://janitor.debian.net unchanged/main amd64 libnet-http-perl all 6.22-1~jan+unchanged1 [25.4 kB] Get:36 https://janitor.debian.net unchanged/main amd64 libwww-robotrules-perl all 6.02-2~jan+unchanged1 [13.2 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:38 https://janitor.debian.net unchanged/main amd64 libwww-perl all 6.67-1~jan+unchanged1 [194 kB] Get:39 https://janitor.debian.net fresh-snapshots/main amd64 libbio-db-embl-perl all 1.7.4+git20190303.1.767039d-1~jan+nus1 [7944 B] Get:40 https://janitor.debian.net unchanged/main amd64 libdevel-stacktrace-perl all 2.0400-2~jan+unchanged1 [28.8 kB] Get:41 https://janitor.debian.net unchanged/main amd64 libexception-class-perl all 1.45-1~jan+unchanged1 [32.3 kB] Get:42 https://janitor.debian.net unchanged/main amd64 libsub-uplevel-perl all 0.2800-3~jan+unchanged1 [14.1 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b2 [687 kB] Get:44 http://deb.debian.org/debian sid/main amd64 gettext amd64 0.21-10 [1300 kB] Get:45 http://deb.debian.org/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:53 http://deb.debian.org/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:54 https://janitor.debian.net unchanged/main amd64 libtest-most-perl all 0.38-1~jan+unchanged1 [23.8 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get:56 http://deb.debian.org/debian sid/main amd64 libhtml-parser-perl amd64 3.80-1 [101 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:60 http://deb.debian.org/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:61 http://deb.debian.org/debian sid/main amd64 libnet-ssleay-perl amd64 1.92-2+b1 [317 kB] Get:62 http://deb.debian.org/debian sid/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:66 http://deb.debian.org/debian sid/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libtext-diff-perl all 1.45-1 [27.7 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libtest-differences-perl all 0.69-1 [18.9 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libxml-parser-perl amd64 2.46-4 [201 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libxml-twig-perl all 1:3.52-2 [181 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.9 MB in 2s (14.1 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 13736 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.38.1-4_amd64.deb ... Unpacking bsdextrautils (2.38.1-4) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1~jan+unchanged1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1~jan+unchanged1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-9_amd64.deb ... Unpacking groff-base (1.22.4-9) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.6-3~jan+unchanged1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.6-3~jan+unchanged1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.10.2-3~jan+unchanged1_amd64.deb ... Unpacking man-db (2.10.2-3~jan+unchanged1) ... Selecting previously unselected package netbase. Preparing to unpack .../05-netbase_6.4_all.deb ... 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Selecting previously unselected package libxml-writer-perl. Preparing to unpack .../71-libxml-writer-perl_0.900-2_all.deb ... Unpacking libxml-writer-perl (0.900-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../72-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.6-3~jan+unchanged1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up bsdextrautils (2.38.1-4) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libmagic-mgc (1:5.44-2) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68+git20210106.1.2385b67-1~jan+nus1) ... Setting up libhtml-tagset-perl (3.20-5~jan+unchanged3) ... Setting up libdebhelper-perl (13.10~jan+unchanged2) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up libmagic1:amd64 (1:5.44-2) ... Setting up perl-openssl-defaults:amd64 (7+b1) ... Setting up gettext-base (0.21-10) ... Setting up m4 (1.4.19-2) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.44-2) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libtext-diff-perl (1.45-1) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.21-10) ... Setting up autoconf (2.71-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1~jan+unchanged1) ... Setting up libsub-uplevel-perl (0.2800-3~jan+unchanged1) ... Setting up libsub-override-perl (0.09-4) ... Setting up netbase (6.4) ... Setting up libdevel-stacktrace-perl (2.0400-2~jan+unchanged1) ... Setting up libbio-perl-perl (1.7.8+git20220912.1.4c9acbe-1~jan+nus1) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b2) ... Setting up liburi-perl (5.12-1~jan+unchanged1) ... Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up gettext (0.21-10) ... Setting up libfile-listing-perl (6.15-1~jan+unchanged1) ... Setting up libtool (2.4.6-15~jan+unchanged2) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.69-1) ... Setting up libnet-http-perl (6.22-1~jan+unchanged1) ... Setting up libexception-class-perl (1.45-1~jan+unchanged1) ... Setting up intltool-debian (0.35.0+20060710.5~jan+unchanged1) ... Setting up dh-autoreconf (20) ... Setting up libtest-exception-perl (0.43-3) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libwww-robotrules-perl (6.02-2~jan+unchanged1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-9) ... Setting up libhtml-parser-perl:amd64 (3.80-1) ... Setting up libio-socket-ssl-perl (2.075-1~jan+unchanged1) ... Setting up libhttp-message-perl (6.36-1~jan+unchanged1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libtest-most-perl (0.38-1~jan+unchanged1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.10.2-3~jan+unchanged1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.10~jan+unchanged2) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up libwww-perl (6.67-1~jan+unchanged1) ... Setting up libbio-db-embl-perl (1.7.4+git20190303.1.767039d-1~jan+nus1) ... Setting up libxml-parser-perl (2.46-4) ... Setting up libxml-twig-perl (1:3.52-2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.15.65+ #1 SMP Fri Dec 30 10:10:30 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.40-2 dpkg-dev_1.21.18 g++-12_12.2.0-14 gcc-12_12.2.0-14 libc6-dev_2.36-8 libstdc++-12-dev_12.2.0-14 libstdc++6_12.2.0-14 linux-libc-dev_6.1.4-1 Package versions: apt_2.5.5 apt-cudf_7.0.0-1+b1 aspcud_1:1.9.6-2 auto-apt-proxy_14 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2 binutils-common_2.40-2 binutils-x86-64-linux-gnu_2.40-2 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b1 ca-certificates_20211016 clasp_3.3.5-4.2 coreutils_9.1-1 cpp_4:12.2.0-3 cpp-12_12.2.0-14 dash_0.5.12-2 debconf_1.5.82 debhelper_13.10~jan+unchanged2 debian-archive-keyring_2021.1.1 debianutils_5.7-0.4 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-3 dpkg_1.21.18 dpkg-dev_1.21.18 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1.1 eatmydata_130-2 fakeroot_1.30.1-1.1 file_1:5.44-2 findutils_4.9.0-4 g++_4:12.2.0-3 g++-12_12.2.0-14 gcc_4:12.2.0-3 gcc-12_12.2.0-14 gcc-12-base_12.2.0-14 gettext_0.21-10 gettext-base_0.21-10 gpgv_2.2.40-1 grep_3.8-3 gringo_5.4.1-3.1+b1 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.5~jan+unchanged1 libacl1_2.3.1-3 libalgorithm-diff-perl_1.201-1 libapt-pkg6.0_2.5.5 libarchive-zip-perl_1.68+git20210106.1.2385b67-1~jan+nus1 libasan8_12.2.0-14 libatomic1_12.2.0-14 libattr1_1:2.5.1-4 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1+b2 libbinutils_2.40-2 libbio-db-embl-perl_1.7.4+git20190303.1.767039d-1~jan+nus1 libbio-perl-perl_1.7.8+git20220912.1.4c9acbe-1~jan+nus1 libblkid1_2.38.1-4 libbz2-1.0_1.0.8-5+b1 libc-bin_2.36-8 libc-dev-bin_2.36-8 libc6_2.36-8 libc6-dev_2.36-8 libcap-ng0_0.8.3-1+b2 libcap2_1:2.66-3 libcapture-tiny-perl_0.48-2 libcc1-0_12.2.0-14 libclass-data-inheritable-perl_0.08-3 libcom-err2_1.46.6~rc1-1.1 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libctf-nobfd0_2.40-2 libctf0_2.40-2 libdata-stag-perl_0.14-3 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.266 libdebhelper-perl_13.10~jan+unchanged2 libdevel-stacktrace-perl_2.0400-2~jan+unchanged1 libdpkg-perl_1.21.18 libeatmydata1_130-2+b1 libelf1_0.188-2.1 libencode-locale-perl_1.05-3 libexception-class-perl_1.45-1~jan+unchanged1 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1.1 libfakeroot_1.30.1-1.1 libffi8_3.4.4-1 libfile-listing-perl_6.15-1~jan+unchanged1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.2.0-14 libgcc-s1_12.2.0-14 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-4 libgomp1_12.2.0-14 libgpg-error0_1.46-1 libgprofng0_2.40-2 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libhtml-parser-perl_3.80-1 libhtml-tagset-perl_3.20-5~jan+unchanged3 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.10-1 libhttp-date-perl_6.05-2 libhttp-message-perl_6.36-1~jan+unchanged1 libhttp-negotiate-perl_6.01-2 libicu72_72.1-3 libidn2-0_2.3.3-1+b1 libio-html-perl_1.004-3 libio-socket-ssl-perl_2.075-1~jan+unchanged1 libio-string-perl_1.08-3.1 libisl23_0.25-1 libitm1_12.2.0-14 libjansson4_2.14-2 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 liblsan0_12.2.0-14 liblua5.4-0_5.4.4-3 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.10-1 liblz4-1_1.9.4-1 liblzma5_5.4.1-0.0 libmagic-mgc_1:5.44-2 libmagic1_1:5.44-2 libmd0_1.0.4-2 libmount1_2.38.1-4 libmpc3_1.3.1-1 libmpdec3_2.5.1-2 libmpfr6_4.2.0-1 libncursesw6_6.4-1 libnet-http-perl_6.22-1~jan+unchanged1 libnet-ssleay-perl_1.92-2+b1 libnettle8_3.8.1-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-2 libpam-modules_1.5.2-6 libpam-modules-bin_1.5.2-6 libpam-runtime_1.5.2-6 libpam0g_1.5.2-6 libpcre2-8-0_10.42-1 libperl5.36_5.36.0-7 libpipeline1_1.5.6-3~jan+unchanged1 libpython3.11_3.11.1-2 libpython3.11-minimal_3.11.1-2 libpython3.11-stdlib_3.11.1-2 libquadmath0_12.2.0-14 libreadline8_8.2-1.3 libregexp-ipv6-perl_0.03-3 libseccomp2_2.5.4-1+b2 libselinux1_3.4-1+b4 libsemanage-common_3.4-1 libsemanage2_3.4-1+b4 libsepol2_3.4-2 libsmartcols1_2.38.1-4 libsqlite3-0_3.40.1-1 libss2_1.46.6~rc1-1.1 libssl3_3.0.7-1 libstdc++-12-dev_12.2.0-14 libstdc++6_12.2.0-14 libsub-override-perl_0.09-4 libsub-uplevel-perl_0.2800-3~jan+unchanged1 libsystemd0_252.4-1 libtasn1-6_4.19.0-2 libtest-deep-perl_1.204-1 libtest-differences-perl_0.69-1 libtest-exception-perl_0.43-3 libtest-most-perl_0.38-1~jan+unchanged1 libtest-warn-perl_0.37-2 libtext-diff-perl_1.45-1 libtimedate-perl_2.3300-2 libtinfo6_6.4-1 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.6-15~jan+unchanged2 libtry-tiny-perl_0.31-2 libtsan2_12.2.0-14 libubsan1_12.2.0-14 libuchardet0_0.0.7-1~jan+unchanged1 libudev1_252.4-1 libunistring2_1.0-2 liburi-perl_5.12-1~jan+unchanged1 libuuid1_2.38.1-4 libwww-perl_6.67-1~jan+unchanged1 libwww-robotrules-perl_6.02-2~jan+unchanged1 libxml-parser-perl_2.46-4 libxml-twig-perl_1:3.52-2 libxml-writer-perl_0.900-2 libxml2_2.9.14+dfsg-1.1+b2 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg2-3 linux-libc-dev_6.1.4-1 login_1:4.13+dfsg1-1 logsave_1.46.6~rc1-1.1 m4_1.4.19-2 make_4.3-4.1 man-db_2.10.2-3~jan+unchanged1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-4 ncurses-base_6.4-1 ncurses-bin_6.4-1 netbase_6.4 openssl_3.0.7-1 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 perl-openssl-defaults_7+b1 po-debconf_1.0.21+nmu1 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.17+nmu1 sysvinit-utils_3.06-2 tar_1.34+dfsg-1.1 tzdata_2022g-2 usr-is-merged_35 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 xz-utils_5.4.1-0.0 zlib1g_1:1.2.13.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- Format: 3.0 (quilt) Source: libbio-variation-perl Binary: libbio-variation-perl Architecture: all Version: 1.7.5+git20200108.1.fde2830-1~jan+nus2 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://metacpan.org/release/Bio-Variation Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libbio-variation-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-variation-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: perl, libbio-perl-perl, libtest-most-perl, libbio-db-embl-perl, libio-string-perl, libxml-twig-perl, libxml-writer-perl Package-List: libbio-variation-perl deb perl optional arch=all Checksums-Sha1: 5302f803a1e3e336377da5fab6e79da022bf8476 57788 libbio-variation-perl_1.7.5+git20200108.1.fde2830.orig.tar.gz 01e9520cf6a01968772ceeb6611d5a4129cf1c35 2292 libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.debian.tar.xz Checksums-Sha256: 6ecd685920207e0009350399216d16b30c2da0015c3d5ddbc045d163ec607ac1 57788 libbio-variation-perl_1.7.5+git20200108.1.fde2830.orig.tar.gz c765b0b70036659454600b36811d644f89c025ce2b1f1686a299805173cc5b39 2292 libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.debian.tar.xz Files: ada57a9a3ef3f80da20e4a6e40e98317 57788 libbio-variation-perl_1.7.5+git20200108.1.fde2830.orig.tar.gz 3ec8940a44e500b48899994e82f424c5 2292 libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.debian.tar.xz dpkg-source: warning: extracting unsigned source package (libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.dsc) dpkg-source: info: extracting libbio-variation-perl in /<> dpkg-source: info: unpacking libbio-variation-perl_1.7.5+git20200108.1.fde2830.orig.tar.gz dpkg-source: info: unpacking libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LC_ALL=C.UTF-8 LC_CTYPE=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=root PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin PWD=/<> SCHROOT_ALIAS_NAME=fresh-snapshots-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=0 SCHROOT_GROUP=root SCHROOT_SESSION_ID=sid-amd64-sbuild-1e2b4b03-85eb-4756-a48f-786f94ad8662 SCHROOT_UID=0 SCHROOT_USER=root SHELL=/bin/sh SOURCE_DATE_EPOCH=1674128063 USER=root dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot dpkg-buildpackage: info: source package libbio-variation-perl dpkg-buildpackage: info: source version 1.7.5+git20200108.1.fde2830-1~jan+nus2 dpkg-buildpackage: info: source distribution fresh-snapshots dpkg-buildpackage: info: source changed by Debian Janitor dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbio-variation-perl using existing ./libbio-variation-perl_1.7.5+git20200108.1.fde2830.orig.tar.gz dpkg-source: info: building libbio-variation-perl in libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.debian.tar.xz dpkg-source: info: building libbio-variation-perl in libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Variation Writing MYMETA.yml and MYMETA.json dh_auto_build make -j2 make[1]: Entering directory '/<>' cp lib/Bio/Variation/IO/flat.pm blib/lib/Bio/Variation/IO/flat.pm cp lib/Bio/Variation/SeqDiff.pm blib/lib/Bio/Variation/SeqDiff.pm cp lib/Bio/Variation/IO/xml.pm blib/lib/Bio/Variation/IO/xml.pm cp lib/Bio/Variation/IO.pm blib/lib/Bio/Variation/IO.pm cp lib/Bio/Variation/SNP.pm blib/lib/Bio/Variation/SNP.pm cp lib/Bio/Variation.pm blib/lib/Bio/Variation.pm cp lib/Bio/Variation/Allele.pm blib/lib/Bio/Variation/Allele.pm cp lib/Bio/Variation/VariantI.pm blib/lib/Bio/Variation/VariantI.pm cp lib/Bio/Variation/AAChange.pm blib/lib/Bio/Variation/AAChange.pm cp lib/Bio/Variation/RNAChange.pm blib/lib/Bio/Variation/RNAChange.pm cp lib/Bio/Variation/DNAMutation.pm blib/lib/Bio/Variation/DNAMutation.pm cp lib/Bio/Variation/AAReverseMutate.pm blib/lib/Bio/Variation/AAReverseMutate.pm cp bin/bp_flanks blib/script/bp_flanks "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_flanks Manifying 1 pod document Manifying 12 pod documents make[1]: Leaving directory '/<>' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ........... 1..13 ok 1 - Bio/Variation.pm loaded ok ok 2 - Bio/Variation/AAChange.pm loaded ok ok 3 - Bio/Variation/AAReverseMutate.pm loaded ok ok 4 - Bio/Variation/Allele.pm loaded ok ok 5 - Bio/Variation/DNAMutation.pm loaded ok ok 6 - Bio/Variation/IO.pm loaded ok ok 7 - Bio/Variation/IO/flat.pm loaded ok ok 8 - Bio/Variation/IO/xml.pm loaded ok ok 9 - Bio/Variation/RNAChange.pm loaded ok ok 10 - Bio/Variation/SNP.pm loaded ok ok 11 - Bio/Variation/SeqDiff.pm loaded ok ok 12 - Bio/Variation/VariantI.pm loaded ok ok 13 - bin/bp_flanks compiled ok ok t/AAChange.t ............. 1..27 ok 1 - use Bio::Variation::Allele; ok 2 - use Bio::Variation::AAChange; ok 3 - use Bio::Variation::RNAChange; ok 4 ok 5 - An object of class 'Bio::Variation::AAChange' isa 'Bio::Variation::AAChange' ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 - Trivial name is [V3A] ok 27 ok t/AAReverseMutate.t ...... 1..16 ok 1 - use Bio::Variation::AAReverseMutate; ok 2 ok 3 - An object of class 'Bio::Variation::AAReverseMutate' isa 'Bio::Variation::AAReverseMutate' ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 - An object of class 'Bio::Variation::RNAChange' isa 'Bio::Variation::RNAChange' ok 11 ok 12 ok 13 ok 14 - Codon_ori is |ttc| ok 15 ok 16 ok t/Allele.t ............... 1..14 ok 1 - use Bio::Variation::Allele; ok 2 - An object of class 'Bio::Variation::Allele' isa 'Bio::Variation::Allele' ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok t/author-mojibake.t ...... skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t .... skipped: these tests are for testing by the author t/DNAMutation.t .......... 1..37 ok 1 - use Bio::Variation::DNAMutation; ok 2 - use Bio::Variation::Allele; ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok t/RNAChange.t ............ 1..31 ok 1 - use Bio::Variation::Allele; ok 2 - use Bio::Variation::RNAChange; ok 3 - use Bio::Variation::AAChange; ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 - label ismissense ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 - Codon_ori is |gaa| ok 26 - Codon_mut is |aaa| ok 27 ok 28 ok 29 ok 30 ok 31 ok t/SeqDiff.t .............. 1..44 ok 1 - use Bio::Variation::SeqDiff; ok 2 - use Bio::Variation::DNAMutation; ok 3 - use Bio::Variation::Allele; ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 - An object of class 'Bio::Variation::DNAMutation' isa 'Bio::Variation::VariantI' ok 34 - An object of class 'Bio::Variation::DNAMutation' isa 'Bio::Variation::VariantI' ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 - An object of class 'Bio::PrimarySeq' isa 'Bio::PrimarySeq' ok 43 ok 44 ok t/SNP.t .................. 1..13 ok 1 - use Bio::Variation::SNP; ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok t/Variation_IO.t ......... 1..26 ok 1 - use Bio::Variation::IO; ok 2 ok 3 ok 4 ok 5 ok 6 - test output file compared to input ok 7 ok 8 ok 9 ok 10 ok 11 - test output file compared to input ok 12 ok 13 ok 14 ok 15 ok 16 - test output file compared to input ok 17 ok 18 ok 19 ok 20 ok 21 - test output file compared to input ok 22 ok 23 ok 24 ok 25 ok 26 - test output file compared to input ok All tests successful. Files=12, Tests=221, 7 wallclock secs ( 0.23 usr 0.11 sys + 5.29 cusr 0.86 csys = 6.49 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-variation-perl/ make -j2 install DESTDIR=/<>/libbio-variation-perl-1.7.5\+git20200108.1.fde2830/debian/libbio-variation-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' Manifying 1 pod document Manifying 12 pod documents Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/AAReverseMutate.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/DNAMutation.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/RNAChange.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/AAChange.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/VariantI.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/Allele.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/SNP.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/IO.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/SeqDiff.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/IO/xml.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/IO/flat.pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man1/bp_flanks.1p Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::VariantI.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::SeqDiff.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::SNP.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::RNAChange.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::IO::xml.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::IO::flat.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::IO.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::DNAMutation.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::Allele.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::AAReverseMutate.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::AAChange.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation.3pm Installing /<>/debian/libbio-variation-perl/usr/bin/bp_flanks make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-variation-perl' in '../libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2_all.deb'. dpkg-genbuildinfo -O../libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2_amd64.buildinfo dpkg-genchanges -O../libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2_amd64.changes dpkg-genchanges: info: including full source code in upload dpkg-source --after-build . dpkg-buildpackage: info: full upload (original source is included) -------------------------------------------------------------------------------- Build finished at 2023-01-19T11:36:46Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2_amd64.changes: --------------------------------------------------------------------------- Format: 1.8 Date: Thu, 19 Jan 2023 11:34:49 -0000 Source: libbio-variation-perl Binary: libbio-variation-perl Architecture: source all Version: 1.7.5+git20200108.1.fde2830-1~jan+nus2 Distribution: fresh-snapshots Urgency: low Maintainer: Debian Med Packaging Team Changed-By: Debian Janitor Description: libbio-variation-perl - BioPerl variation-related functionality Changes: libbio-variation-perl (1.7.5+git20200108.1.fde2830-1~jan+nus2) fresh-snapshots; urgency=low . [ Debian Janitor ] * New upstream snapshot. . [ root ] * Build for debian-janitor apt repository. 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libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.debian.tar.xz b30c091a0b7022157aa51e4740e8c80b3d9f0928cfd400da0a1322fd9f7deca7 72804 libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2_all.deb c00a90812d38211a7fa43a49be18cd6c024e98b27bc29e0d0531b03f7a55376c 7080 libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2_amd64.buildinfo Files: 9daef99be4121262c2e9a2a46c87320e 1541 perl optional libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.dsc ada57a9a3ef3f80da20e4a6e40e98317 57788 perl optional libbio-variation-perl_1.7.5+git20200108.1.fde2830.orig.tar.gz 3ec8940a44e500b48899994e82f424c5 2292 perl optional libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.debian.tar.xz 6efc2da022c41e42fc00d3c41cbb171d 72804 perl optional libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2_all.deb d38ff587a82648621af9e30d3d334a70 7080 perl optional libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-variation-perl Binary: libbio-variation-perl Architecture: all source Version: 1.7.5+git20200108.1.fde2830-1~jan+nus2 Checksums-Md5: 9daef99be4121262c2e9a2a46c87320e 1541 libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.dsc 6efc2da022c41e42fc00d3c41cbb171d 72804 libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2_all.deb Checksums-Sha1: c10a4451b8285e70a83274db17b450aae3400650 1541 libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.dsc 8365713d7ec40b2eae8b2231954b61bfcd252901 72804 libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2_all.deb Checksums-Sha256: ce77fdab61564834e341871e2fd737eef9b99f4781e6b17e92acbb382c9b9495 1541 libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.dsc b30c091a0b7022157aa51e4740e8c80b3d9f0928cfd400da0a1322fd9f7deca7 72804 libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 19 Jan 2023 11:36:45 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-10), autotools-dev (= 20220109.1), base-files (= 12.3), base-passwd (= 3.6.1), bash (= 5.2.15-2), binutils (= 2.40-2), binutils-common (= 2.40-2), binutils-x86-64-linux-gnu (= 2.40-2), bsdextrautils (= 2.38.1-4), bsdutils (= 1:2.38.1-4), build-essential (= 12.9), bzip2 (= 1.0.8-5+b1), ca-certificates (= 20211016), coreutils (= 9.1-1), cpp (= 4:12.2.0-3), cpp-12 (= 12.2.0-14), dash (= 0.5.12-2), debconf (= 1.5.82), debhelper (= 13.10~jan+unchanged2), debianutils (= 5.7-0.4), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-3), dpkg (= 1.21.18), dpkg-dev (= 1.21.18), dwz (= 0.15-1), file (= 1:5.44-2), findutils (= 4.9.0-4), g++ (= 4:12.2.0-3), g++-12 (= 12.2.0-14), gcc (= 4:12.2.0-3), gcc-12 (= 12.2.0-14), gcc-12-base (= 12.2.0-14), gettext (= 0.21-10), gettext-base (= 0.21-10), grep (= 3.8-3), groff-base (= 1.22.4-9), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.5~jan+unchanged1), libacl1 (= 2.3.1-3), libalgorithm-diff-perl (= 1.201-1), libarchive-zip-perl (= 1.68+git20210106.1.2385b67-1~jan+nus1), libasan8 (= 12.2.0-14), libatomic1 (= 12.2.0-14), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.0.7-1.1), libaudit1 (= 1:3.0.7-1.1+b2), libbinutils (= 2.40-2), libbio-db-embl-perl (= 1.7.4+git20190303.1.767039d-1~jan+nus1), libbio-perl-perl (= 1.7.8+git20220912.1.4c9acbe-1~jan+nus1), libblkid1 (= 2.38.1-4), libbz2-1.0 (= 1.0.8-5+b1), libc-bin (= 2.36-8), libc-dev-bin (= 2.36-8), libc6 (= 2.36-8), libc6-dev (= 2.36-8), libcap-ng0 (= 0.8.3-1+b2), libcap2 (= 1:2.66-3), libcapture-tiny-perl (= 0.48-2), libcc1-0 (= 12.2.0-14), libclass-data-inheritable-perl (= 0.08-3), libcom-err2 (= 1.46.6~rc1-1.1), libcrypt-dev (= 1:4.4.33-2), libcrypt1 (= 1:4.4.33-2), libctf-nobfd0 (= 2.40-2), libctf0 (= 2.40-2), libdata-stag-perl (= 0.14-3), libdb5.3 (= 5.3.28+dfsg2-1), libdebconfclient0 (= 0.266), libdebhelper-perl (= 13.10~jan+unchanged2), libdevel-stacktrace-perl (= 2.0400-2~jan+unchanged1), libdpkg-perl (= 1.21.18), libelf1 (= 0.188-2.1), libencode-locale-perl (= 1.05-3), libexception-class-perl (= 1.45-1~jan+unchanged1), libexpat1 (= 2.5.0-1), libfile-listing-perl (= 6.15-1~jan+unchanged1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-12-dev (= 12.2.0-14), libgcc-s1 (= 12.2.0-14), libgcrypt20 (= 1.10.1-3), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.2.1+dfsg1-1.1), libgomp1 (= 12.2.0-14), libgpg-error0 (= 1.46-1), libgprofng0 (= 2.40-2), libgssapi-krb5-2 (= 1.20.1-1), libhtml-parser-perl (= 3.80-1), libhtml-tagset-perl (= 3.20-5~jan+unchanged3), libhtml-tree-perl (= 5.07-3), libhttp-cookies-perl (= 6.10-1), libhttp-date-perl (= 6.05-2), libhttp-message-perl (= 6.36-1~jan+unchanged1), libhttp-negotiate-perl (= 6.01-2), libicu72 (= 72.1-3), libio-html-perl (= 1.004-3), libio-socket-ssl-perl (= 2.075-1~jan+unchanged1), libio-string-perl (= 1.08-3.1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-14), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-1), libkrb5support0 (= 1.20.1-1), liblsan0 (= 12.2.0-14), liblwp-mediatypes-perl (= 6.04-2), liblwp-protocol-https-perl (= 6.10-1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.0), libmagic-mgc (= 1:5.44-2), libmagic1 (= 1:5.44-2), libmd0 (= 1.0.4-2), libmount1 (= 2.38.1-4), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libnet-http-perl (= 6.22-1~jan+unchanged1), libnet-ssleay-perl (= 1.92-2+b1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.5.2-6), libpam-modules-bin (= 1.5.2-6), libpam-runtime (= 1.5.2-6), libpam0g (= 1.5.2-6), libpcre2-8-0 (= 10.42-1), libperl5.36 (= 5.36.0-7), libpipeline1 (= 1.5.6-3~jan+unchanged1), libquadmath0 (= 12.2.0-14), libregexp-ipv6-perl (= 0.03-3), libseccomp2 (= 2.5.4-1+b2), libselinux1 (= 3.4-1+b4), libsmartcols1 (= 2.38.1-4), libssl3 (= 3.0.7-1), libstdc++-12-dev (= 12.2.0-14), libstdc++6 (= 12.2.0-14), libsub-override-perl (= 0.09-4), libsub-uplevel-perl (= 0.2800-3~jan+unchanged1), libsystemd0 (= 252.4-1), libtest-deep-perl (= 1.204-1), libtest-differences-perl (= 0.69-1), libtest-exception-perl (= 0.43-3), libtest-most-perl (= 0.38-1~jan+unchanged1), libtest-warn-perl (= 0.37-2), libtext-diff-perl (= 1.45-1), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.4-1), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.6-15~jan+unchanged2), libtry-tiny-perl (= 0.31-2), libtsan2 (= 12.2.0-14), libubsan1 (= 12.2.0-14), libuchardet0 (= 0.0.7-1~jan+unchanged1), libudev1 (= 252.4-1), libunistring2 (= 1.0-2), liburi-perl (= 5.12-1~jan+unchanged1), libuuid1 (= 2.38.1-4), libwww-perl (= 6.67-1~jan+unchanged1), libwww-robotrules-perl (= 6.02-2~jan+unchanged1), libxml-parser-perl (= 2.46-4), libxml-twig-perl (= 1:3.52-2), libxml-writer-perl (= 0.900-2), libxml2 (= 2.9.14+dfsg-1.1+b2), libzstd1 (= 1.5.2+dfsg2-3), linux-libc-dev (= 6.1.4-1), login (= 1:4.13+dfsg1-1), m4 (= 1.4.19-2), make (= 4.3-4.1), man-db (= 2.10.2-3~jan+unchanged1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.4-1), ncurses-bin (= 6.4-1), netbase (= 6.4), openssl (= 3.0.7-1), patch (= 2.7.6-7), perl (= 5.36.0-7), perl-base (= 5.36.0-7), perl-modules-5.36 (= 5.36.0-7), perl-openssl-defaults (= 7+b1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-1), sensible-utils (= 0.0.17+nmu1), sysvinit-utils (= 3.06-2), tar (= 1.34+dfsg-1.1), usr-is-merged (= 35), util-linux (= 2.38.1-4), util-linux-extra (= 2.38.1-4), xz-utils (= 5.4.1-0.0), zlib1g (= 1:1.2.13.dfsg-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1674128063" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2_all.deb -------------------------------------------------------------------- new Debian package, version 2.0. size 72804 bytes: control archive=1584 bytes. 952 bytes, 20 lines control 2277 bytes, 29 lines md5sums Package: libbio-variation-perl Version: 1.7.5+git20200108.1.fde2830-1~jan+nus2 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 232 Depends: perl:any, libbio-perl-perl, libio-string-perl, libxml-twig-perl, libxml-writer-perl Breaks: libbio-perl-perl (<< 1.7.3) Replaces: libbio-perl-perl (<< 1.7.3) Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-Variation Description: BioPerl variation-related functionality The code in this distribution focuses on simple low-dependency variant-related functionality for BioPerl. . Bio::Variation name space contains modules to store sequence variation information as differences between the reference sequence and changes sequences. Also included are classes to write out and recrete objects from EMBL-like flat files and XML. Lastly, there are simple classes to calculate values for sequence change objects. drwxr-xr-x root/root 0 2023-01-19 11:34 ./ drwxr-xr-x root/root 0 2023-01-19 11:34 ./usr/ drwxr-xr-x root/root 0 2023-01-19 11:34 ./usr/bin/ -rwxr-xr-x root/root 9574 2023-01-19 11:34 ./usr/bin/bp_flanks drwxr-xr-x root/root 0 2023-01-19 11:34 ./usr/share/ drwxr-xr-x root/root 0 2023-01-19 11:34 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-01-19 11:34 ./usr/share/doc/libbio-variation-perl/ -rw-r--r-- root/root 645 2023-01-19 11:34 ./usr/share/doc/libbio-variation-perl/changelog.Debian.gz -rw-r--r-- root/root 347 2023-01-19 11:34 ./usr/share/doc/libbio-variation-perl/changelog.gz -rw-r--r-- root/root 1188 2023-01-19 11:34 ./usr/share/doc/libbio-variation-perl/copyright drwxr-xr-x root/root 0 2023-01-19 11:34 ./usr/share/man/ drwxr-xr-x root/root 0 2023-01-19 11:34 ./usr/share/man/man1/ -rw-r--r-- root/root 2850 2023-01-19 11:34 ./usr/share/man/man1/bp_flanks.1p.gz drwxr-xr-x root/root 0 2023-01-19 11:34 ./usr/share/man/man3/ -rw-r--r-- root/root 1475 2023-01-19 11:34 ./usr/share/man/man3/Bio::Variation.3pm.gz -rw-r--r-- root/root 2859 2023-01-19 11:34 ./usr/share/man/man3/Bio::Variation::AAChange.3pm.gz -rw-r--r-- root/root 2603 2023-01-19 11:34 ./usr/share/man/man3/Bio::Variation::AAReverseMutate.3pm.gz -rw-r--r-- root/root 2566 2023-01-19 11:34 ./usr/share/man/man3/Bio::Variation::Allele.3pm.gz -rw-r--r-- root/root 2782 2023-01-19 11:34 ./usr/share/man/man3/Bio::Variation::DNAMutation.3pm.gz -rw-r--r-- root/root 4123 2023-01-19 11:34 ./usr/share/man/man3/Bio::Variation::IO.3pm.gz -rw-r--r-- root/root 2008 2023-01-19 11:34 ./usr/share/man/man3/Bio::Variation::IO::flat.3pm.gz -rw-r--r-- root/root 2192 2023-01-19 11:34 ./usr/share/man/man3/Bio::Variation::IO::xml.3pm.gz -rw-r--r-- root/root 3428 2023-01-19 11:34 ./usr/share/man/man3/Bio::Variation::RNAChange.3pm.gz -rw-r--r-- root/root 2373 2023-01-19 11:34 ./usr/share/man/man3/Bio::Variation::SNP.3pm.gz -rw-r--r-- root/root 4236 2023-01-19 11:34 ./usr/share/man/man3/Bio::Variation::SeqDiff.3pm.gz -rw-r--r-- root/root 4489 2023-01-19 11:34 ./usr/share/man/man3/Bio::Variation::VariantI.3pm.gz drwxr-xr-x root/root 0 2023-01-19 11:34 ./usr/share/perl5/ drwxr-xr-x root/root 0 2023-01-19 11:34 ./usr/share/perl5/Bio/ -rw-r--r-- root/root 1040 2023-01-19 11:34 ./usr/share/perl5/Bio/Variation.pm drwxr-xr-x root/root 0 2023-01-19 11:34 ./usr/share/perl5/Bio/Variation/ -rw-r--r-- root/root 13893 2023-01-19 11:34 ./usr/share/perl5/Bio/Variation/AAChange.pm -rw-r--r-- root/root 7517 2023-01-19 11:34 ./usr/share/perl5/Bio/Variation/AAReverseMutate.pm -rw-r--r-- root/root 6642 2023-01-19 11:34 ./usr/share/perl5/Bio/Variation/Allele.pm -rw-r--r-- root/root 9955 2023-01-19 11:34 ./usr/share/perl5/Bio/Variation/DNAMutation.pm -rw-r--r-- root/root 9408 2023-01-19 11:34 ./usr/share/perl5/Bio/Variation/IO.pm drwxr-xr-x root/root 0 2023-01-19 11:34 ./usr/share/perl5/Bio/Variation/IO/ -rw-r--r-- root/root 21020 2023-01-19 11:34 ./usr/share/perl5/Bio/Variation/IO/flat.pm -rw-r--r-- root/root 14812 2023-01-19 11:34 ./usr/share/perl5/Bio/Variation/IO/xml.pm -rw-r--r-- root/root 16050 2023-01-19 11:34 ./usr/share/perl5/Bio/Variation/RNAChange.pm -rw-r--r-- root/root 4919 2023-01-19 11:34 ./usr/share/perl5/Bio/Variation/SNP.pm -rw-r--r-- root/root 25035 2023-01-19 11:34 ./usr/share/perl5/Bio/Variation/SeqDiff.pm -rw-r--r-- root/root 27318 2023-01-19 11:34 ./usr/share/perl5/Bio/Variation/VariantI.pm lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian Filtered Build-Depends: lintian dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1340 B] Get:5 copy:/<>/apt_archive ./ Packages [1382 B] Fetched 3337 B in 0s (0 B/s) Reading package lists... Get:1 https://janitor.debian.net unchanged InRelease [3677 B] Get:2 https://janitor.debian.net fresh-releases InRelease [3697 B] Get:3 https://janitor.debian.net fresh-snapshots InRelease [3700 B] Ign:1 https://janitor.debian.net unchanged InRelease Ign:2 https://janitor.debian.net fresh-releases InRelease Ign:3 https://janitor.debian.net fresh-snapshots InRelease Get:4 https://janitor.debian.net fresh-snapshots/main amd64 Packages [2413 kB] Fetched 2425 kB in 2s (1191 kB/s) Reading package lists... W: GPG error: https://janitor.debian.net unchanged InRelease: The following signatures were invalid: EXPKEYSIG 6F915003D1998D6A Debian Janitor W: GPG error: https://janitor.debian.net fresh-releases InRelease: The following signatures were invalid: EXPKEYSIG 6F915003D1998D6A Debian Janitor W: GPG error: https://janitor.debian.net fresh-snapshots InRelease: The following signatures were invalid: EXPKEYSIG 6F915003D1998D6A Debian Janitor Reading package lists... +------------------------------------------------------------------------------+ | Install lintian build dependencies (aspcud-based resolver) | +------------------------------------------------------------------------------+ Reading package lists... Building dependency tree... Reading state information... apt-cudf is already the newest version (7.0.0-1+b1). aspcud is already the newest version (1:1.9.6-2). 0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded. Installing build dependencies Reading package lists... Building dependency tree... Reading state information... (W)apt-cudf backend: Duplicated package (same version, name and architecture) : (ksh,20220829,all) Execute external solver... The following additional packages will be installed: diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcgi-pm-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdynaloader-functions-perl libemail-address-xs-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-tokeparser-simple-perl libimport-into-perl libio-interactive-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libunicode-utf8-perl libvariable-magic-perl libwww-mechanize-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lziprecover lzop patchutils t1utils ucf unzip Suggested packages: isoquery libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxml-sax-expat-perl The following NEW packages will be installed: diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcgi-pm-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdynaloader-functions-perl libemail-address-xs-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-tokeparser-simple-perl libimport-into-perl libio-interactive-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libunicode-utf8-perl libvariable-magic-perl libwww-mechanize-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lziprecover lzop patchutils sbuild-build-depends-lintian-dummy t1utils ucf unzip 0 upgraded, 102 newly installed, 0 to remove and 19 not upgraded. Need to get 10.1 MB of archives. After this operation, 43.5 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [840 B] Get:2 http://deb.debian.org/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:3 http://deb.debian.org/debian sid/main amd64 diffstat amd64 1.65-1 [33.3 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libassuan0 amd64 2.5.5-5 [48.5 kB] Get:5 http://deb.debian.org/debian sid/main amd64 gpgconf amd64 2.2.40-1 [564 kB] Get:6 http://deb.debian.org/debian sid/main amd64 gpg amd64 2.2.40-1 [948 kB] Get:7 http://deb.debian.org/debian sid/main amd64 iso-codes all 4.12.0-1 [2888 kB] Get:8 https://janitor.debian.net unchanged/main amd64 libparams-classify-perl amd64 0.015-2~jan+unchanged1 [23.2 kB] Get:9 https://janitor.debian.net unchanged/main amd64 libmodule-runtime-perl all 0.016-2~jan+unchanged1 [18.1 kB] Get:10 https://janitor.debian.net unchanged/main amd64 libb-hooks-endofscope-perl all 0.26-1~jan+unchanged2 [19.7 kB] Get:11 https://janitor.debian.net fresh-releases/main amd64 libberkeleydb-perl amd64 0.65-1~jan+nur1 [122 kB] Get:12 https://janitor.debian.net fresh-releases/main amd64 libsub-install-perl all 0.929-1~jan+nur1 [10.5 kB] Get:13 https://janitor.debian.net fresh-releases/main amd64 libsub-exporter-perl all 0.989-1~jan+nur1 [50.2 kB] Get:14 https://janitor.debian.net fresh-snapshots/main amd64 libhtml-tokeparser-simple-perl all 3.16+git20180318.1.9a459f6-1~jan+nus1 [38.3 kB] Get:15 https://janitor.debian.net fresh-snapshots/main amd64 liblist-compare-perl all 0.55+git20220712.1.8c3ce65-1~jan+nus3 [65.9 kB] Get:16 https://janitor.debian.net unchanged/main amd64 liblist-utilsby-perl all 0.12-1~jan+unchanged1 [16.2 kB] Get:17 https://janitor.debian.net unchanged/main amd64 libpackage-stash-perl all 0.40-1~jan+unchanged2 [22.1 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b2 [69.2 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b1 [10.5 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libdevel-callchecker-perl amd64 0.008-2 [15.8 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:25 http://deb.debian.org/debian sid/main amd64 libvariable-magic-perl amd64 0.63-1+b1 [44.0 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libcgi-pm-perl all 4.55-1 [220 kB] Get:27 https://janitor.debian.net unchanged/main amd64 libnamespace-clean-perl all 0.27-2~jan+unchanged1 [15.4 kB] Get:28 https://janitor.debian.net fresh-snapshots/main amd64 libproc-processtable-perl amd64 0.634+git20210927.1.d52f94f-1~jan+nus2 [42.9 kB] Get:29 https://janitor.debian.net unchanged/main amd64 libtime-duration-perl all 1.21-2~jan+unchanged1 [12.6 kB] Get:30 https://janitor.debian.net unchanged/main amd64 libxml-namespacesupport-perl all 1.12-2~jan+unchanged1 [15.2 kB] Get:31 https://janitor.debian.net unchanged/main amd64 libyaml-0-2 amd64 0.2.5-1~jan+unchanged1 [52.1 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libclass-method-modifiers-perl all 2.13-2 [19.4 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b1 [36.4 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libclone-perl amd64 0.46-1 [13.7 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libconfig-tiny-perl all 2.28-2 [16.4 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libparams-util-perl amd64 1.102-2+b1 [24.8 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libdata-optlist-perl all 0.113-1 [10.6 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:39 http://deb.debian.org/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.32-1+b1 [130 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libdata-dpath-perl all 0.58-2 [43.6 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libdata-messagepack-perl amd64 1.02-1+b1 [35.2 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b1 [99.5 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libdevel-size-perl amd64 0.83-2+b1 [24.3 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b1 [29.4 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:56 http://deb.debian.org/debian sid/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:57 http://deb.debian.org/debian sid/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libhtml-form-perl all 6.10-1 [24.0 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libio-interactive-perl all 1.023-2 [11.0 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libipc-run3-perl all 0.048-3 [33.2 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libjson-maybexs-perl all 1.004004-1 [13.3 kB] Get:65 http://deb.debian.org/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:66 http://deb.debian.org/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:69 http://deb.debian.org/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libsub-quote-perl all 2.006006-3 [21.0 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:74 http://deb.debian.org/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b3 [170 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libsub-name-perl amd64 0.26-2+b1 [12.6 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b1 [17.3 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1 [11.4 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libsereal-decoder-perl amd64 5.001+ds-1+b1 [102 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libsereal-encoder-perl amd64 5.001+ds-2 [105 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:84 http://deb.debian.org/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.31-1 [57.4 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.28-1 [28.6 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b1 [24.5 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b1 [8404 B] Get:88 http://deb.debian.org/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1 [13.0 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b2 [198 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b1 [73.0 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2 [20.2 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libwww-mechanize-perl all 2.15-1 [120 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libyaml-libyaml-perl amd64 0.84+ds-1+b1 [34.7 kB] Get:97 http://deb.debian.org/debian sid/main amd64 lziprecover amd64 1.23-4 [111 kB] Get:98 http://deb.debian.org/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:99 http://deb.debian.org/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:100 http://deb.debian.org/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:101 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-27 [172 kB] Get:102 http://deb.debian.org/debian sid/main amd64 lintian all 2.116.0 [1130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.1 MB in 4s (2497 kB/s) Selecting previously unselected package ucf. 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Setting up libcpanel-json-xs-perl:amd64 (4.32-1+b1) ... Setting up libdevel-size-perl (0.83-2+b1) ... Setting up unzip (6.0-27) ... Setting up libcgi-pm-perl (4.55-1) ... Setting up libyaml-libyaml-perl (0.84+ds-1+b1) ... Setting up libio-interactive-perl (1.023-2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2~jan+unchanged1) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-2+b1) ... Setting up libassuan0:amd64 (2.5.5-5) ... Setting up libconfig-tiny-perl (2.28-2) ... Setting up libsereal-encoder-perl (5.001+ds-2) ... Setting up liblist-utilsby-perl (0.12-1~jan+unchanged1) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1~jan+nur1) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up libhtml-tokeparser-simple-perl (3.16+git20180318.1.9a459f6-1~jan+nus1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004004-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b1) ... Setting up libxs-parse-keyword-perl (0.31-1) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.65-1) ... Setting up libvariable-magic-perl (0.63-1+b1) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-2+b1) ... Setting up lziprecover (1.23-4) ... update-alternatives: using /usr/bin/lzip.lziprecover to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.lziprecover to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.lziprecover to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up ucf (3.0043) ... Setting up libparams-util-perl (1.102-2+b1) ... Setting up libtime-duration-perl (1.21-2~jan+unchanged1) ... Setting up libtext-xslate-perl:amd64 (3.5.9-1+b2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libsub-name-perl:amd64 (0.26-2+b1) ... Setting up libsyntax-keyword-try-perl (0.28-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:amd64 (0.634+git20210927.1.d52f94f-1~jan+nus2) ... Setting up libpath-tiny-perl (0.144-1) ... Setting up lzop (1.04-2) ... Setting up gpgconf (2.2.40-1) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-3) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-3) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-3) ... Setting up libclass-xsaccessor-perl (1.19-4+b1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b1) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up libtext-levenshteinxs-perl (0.03-5+b1) ... Setting up libperlio-gzip-perl (0.20-1+b1) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.001+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up iso-codes (4.12.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up gpg (2.2.40-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libhtml-form-perl (6.10-1) ... Setting up libemail-address-xs-perl (1.05-1+b1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libtext-markdown-discount-perl (0.16-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libwww-mechanize-perl (2.15-1) ... Setting up libdata-optlist-perl (0.113-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libsub-exporter-perl (0.989-1~jan+nur1) ... Setting up libparams-classify-perl:amd64 (0.015-2~jan+unchanged1) ... Setting up libmodule-runtime-perl (0.016-2~jan+unchanged1) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1~jan+unchanged2) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1~jan+unchanged2) ... Setting up libnamespace-clean-perl (0.27-2~jan+unchanged1) ... Setting up lintian (2.116.0) ... Setting up sbuild-build-depends-lintian-dummy (0.invalid.0) ... Processing triggers for man-db (2.10.2-3~jan+unchanged1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.36-8) ... Running lintian... running with root privileges is not recommended! W: libbio-variation-perl: bad-whatis-entry [usr/share/man/man3/Bio::Variation.3pm.gz] I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ autopkgtest ----------- autopkgtest [11:37:52]: starting date and time: 2023-01-19 11:37:52+0000 autopkgtest [11:37:52]: version 5.27 autopkgtest [11:37:52]: host workers-z4lq; command line: /usr/bin/autopkgtest '/tmp/janitor-workera743qwcj/build-area/libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2_amd64.changes' --apt-upgrade --no-auto-control -- schroot fresh-snapshots-amd64-sbuild autopkgtest [11:38:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup Get:1 http://deb.debian.org/debian sid InRelease [161 kB] Get:2 http://deb.debian.org/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://deb.debian.org/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://deb.debian.org/debian sid/main Sources T-2023-01-19-0818.11-F-2023-01-19-0818.11.pdiff [20.4 kB] Get:4 http://deb.debian.org/debian sid/main Sources T-2023-01-19-0818.11-F-2023-01-19-0818.11.pdiff [20.4 kB] Get:5 http://deb.debian.org/debian sid/main amd64 Packages T-2023-01-19-0818.11-F-2023-01-19-0818.11.pdiff [3612 B] Get:5 http://deb.debian.org/debian sid/main amd64 Packages T-2023-01-19-0818.11-F-2023-01-19-0818.11.pdiff [3612 B] Get:6 http://deb.debian.org/debian sid/main Translation-en [6956 kB] Fetched 7268 kB in 9s (782 kB/s) Reading package lists... Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. autopkgtest [11:38:34]: testbed dpkg architecture: amd64 autopkgtest [11:38:34]: testbed running kernel: Linux 5.15.65+ #1 SMP Fri Dec 30 10:10:30 UTC 2022 autopkgtest [11:38:34]: @@@@@@@@@@@@@@@@@@@@ source /tmp/janitor-workera743qwcj/build-area/libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.dsc dpkg-source: warning: extracting unsigned source package (/tmp/autopkgtest.SH9xVP/libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.dsc) dpkg-source: info: extracting libbio-variation-perl in src dpkg-source: info: unpacking libbio-variation-perl_1.7.5+git20200108.1.fde2830.orig.tar.gz dpkg-source: info: unpacking libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.debian.tar.xz autopkgtest [11:38:34]: testing package libbio-variation-perl version 1.7.5+git20200108.1.fde2830-1~jan+nus2 autopkgtest [11:38:34]: build not needed * SKIP no tests in this package autopkgtest [11:38:34]: @@@@@@@@@@@@@@@@@@@@ summary * SKIP no tests in this package I: Autopkgtest run was successful. +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Autopkgtest: no tests Build Architecture: amd64 Build Type: full Build-Space: 1240 Build-Time: 14 Distribution: fresh-snapshots Host Architecture: amd64 Install-Time: 48 Job: /tmp/janitor-workera743qwcj/build-area/libbio-variation-perl_1.7.5+git20200108.1.fde2830-1~jan+nus2.dsc Lintian: warn Machine Architecture: amd64 Package: libbio-variation-perl Package-Time: 85 Source-Version: 1.7.5+git20200108.1.fde2830-1~jan+nus2 Space: 1240 Status: successful Version: 1.7.5+git20200108.1.fde2830-1~jan+nus2 -------------------------------------------------------------------------------- Finished at 2023-01-19T11:36:46Z Build needed 00:01:25, 1240k disk space Cleaning build dir: /tmp/janitor-workera743qwcj/build-area/libbio-variation-perl-1.7.5+git20200108.1.fde2830