New Upstream Snapshot - libchemistry-file-mdlmol-perl

Ready changes

Summary

Merged new upstream version: 0.24+git20221007.1.b64fb21 (was: 0.24).

Resulting package

Built on 2023-01-19T02:49 (took 5m19s)

The resulting binary packages can be installed (if you have the apt repository enabled) by running one of:

apt install -t fresh-snapshots libchemistry-file-mdlmol-perl

Lintian Result

Diff

diff --git a/Changes b/Changes
index 6fef733..2b39d46 100644
--- a/Changes
+++ b/Changes
@@ -1,6 +1,6 @@
 Revision history for Perl extension Chemistry::File::MDLMol.
 
-0.24  Thu Mar 3
+0.24  Thu Feb 3
         - Implemented reading of the chiral flag.
         - Fixed POD typos. Thanks Florian Schlichting.
         - Updated MDL file specification links (bug 140933)
diff --git a/MANIFEST b/MANIFEST
index 87c7245..a052f84 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -1,4 +1,4 @@
-# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.010.
+# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.029.
 Changes
 MANIFEST
 META.json
diff --git a/META.json b/META.json
index c70c349..cacd703 100644
--- a/META.json
+++ b/META.json
@@ -4,7 +4,7 @@
       "Ivan Tubert-Brohman <itub@cpan.org>"
    ],
    "dynamic_config" : 0,
-   "generated_by" : "Dist::Zilla version 6.010, CPAN::Meta::Converter version 2.150010",
+   "generated_by" : "Dist::Zilla version 6.029, CPAN::Meta::Converter version 2.150010",
    "license" : [
       "perl_5"
    ],
@@ -45,6 +45,8 @@
       }
    },
    "version" : "0.24",
-   "x_serialization_backend" : "Cpanel::JSON::XS version 3.0239"
+   "x_generated_by_perl" : "v5.36.0",
+   "x_serialization_backend" : "Cpanel::JSON::XS version 4.32",
+   "x_spdx_expression" : "Artistic-1.0-Perl OR GPL-1.0-or-later"
 }
 
diff --git a/META.yml b/META.yml
index 29dd415..94bd1e8 100644
--- a/META.yml
+++ b/META.yml
@@ -7,7 +7,7 @@ build_requires:
 configure_requires:
   ExtUtils::MakeMaker: '0'
 dynamic_config: 0
-generated_by: 'Dist::Zilla version 6.010, CPAN::Meta::Converter version 2.150010'
+generated_by: 'Dist::Zilla version 6.029, CPAN::Meta::Converter version 2.150010'
 license: perl
 meta-spec:
   url: http://module-build.sourceforge.net/META-spec-v1.4.html
@@ -23,4 +23,6 @@ resources:
   homepage: https://search.cpan.org/dist/Chemistry-File-MDLMol
   repository: git://github.com/perlmol/chemistry-file-mdlmol.git
 version: '0.24'
-x_serialization_backend: 'YAML::Tiny version 1.70'
+x_generated_by_perl: v5.36.0
+x_serialization_backend: 'YAML::Tiny version 1.73'
+x_spdx_expression: 'Artistic-1.0-Perl OR GPL-1.0-or-later'
diff --git a/Makefile.PL b/Makefile.PL
index 40e5322..0cfffbe 100644
--- a/Makefile.PL
+++ b/Makefile.PL
@@ -1,4 +1,4 @@
-# This file was automatically generated by Dist::Zilla::Plugin::MakeMaker v6.010.
+# This file was automatically generated by Dist::Zilla::Plugin::MakeMaker v6.029.
 use strict;
 use warnings;
 
diff --git a/debian/changelog b/debian/changelog
index 1f53afb..8e4015c 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+libchemistry-file-mdlmol-perl (0.24+git20221007.1.b64fb21-1) UNRELEASED; urgency=low
+
+  * New upstream snapshot.
+
+ -- Debian Janitor <janitor@jelmer.uk>  Thu, 19 Jan 2023 02:46:19 -0000
+
 libchemistry-file-mdlmol-perl (0.24-1) unstable; urgency=medium
 
   * Team upload.
diff --git a/lib/Chemistry/File/MDLMol.pm b/lib/Chemistry/File/MDLMol.pm
index 6f597d3..673b241 100644
--- a/lib/Chemistry/File/MDLMol.pm
+++ b/lib/Chemistry/File/MDLMol.pm
@@ -189,6 +189,8 @@ sub read_mol {
             type => $type, 
             atoms => [$mol->atoms($a1,$a2)],
             order => $order,
+            attr => { 'mdlmol/stereo' => int $stereo,
+                      'mdlmol/topology' => int $topology },
         );
         if ($mol->isa('Chemistry::Pattern')) {
             $self->bond_expr($bond, $i, $type, $topology);
diff --git a/lib/Chemistry/File/SDF.pm b/lib/Chemistry/File/SDF.pm
index fa35e75..de2499d 100644
--- a/lib/Chemistry/File/SDF.pm
+++ b/lib/Chemistry/File/SDF.pm
@@ -173,8 +173,11 @@ L<https://github.com/perlmol/Chemistry-File-MDLMol>
 L<Chemistry::Mol>
 
 The MDL file format specification.
-L<http://www.mdl.com/downloads/public/ctfile/ctfile.pdf> or
-Arthur Dalby et al., J. Chem. Inf. Comput. Sci, 1992, 32, 244-255.
+L<https://discover.3ds.com/ctfile-documentation-request-form#_ga=2.229779804.1581205944.1643725102-a2d5f010-6f4c-11ec-a2da-e3641d195888>,
+L<https://discover.3ds.com/sites/default/files/2020-08/biovia_ctfileformats_2020.pdf>,
+L<https://web.archive.org/web/20070927033700/http://www.mdl.com/downloads/public/ctfile/ctfile.pdf>,
+or Arthur Dalby et al., J. Chem. Inf. Comput. Sci, 1992, 32, 244-255.
+L<https://doi.org/10.1021/ci00007a012>.
 
 =head1 AUTHOR
 

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