New Upstream Snapshot - python-cigar
Ready changes
Summary
Merged new upstream version: 0.1.3+git20190926.1.609c7f9 (was: 0.1.3).
Resulting package
Built on 2023-01-20T02:22 (took 12m19s)
The resulting binary packages can be installed (if you have the apt repository enabled) by running one of:
apt install -t fresh-snapshots python3-cigar
Lintian Result
Diff
diff --git a/PKG-INFO b/PKG-INFO
index 7de0255..c71a999 100644
--- a/PKG-INFO
+++ b/PKG-INFO
@@ -1,4 +1,4 @@
-Metadata-Version: 1.1
+Metadata-Version: 2.1
Name: cigar
Version: 0.1.3
Summary: manipulate SAM cigar strings
@@ -6,77 +6,79 @@ Home-page: https://github.com/brentp/cigar
Author: Brent Pedersen
Author-email: bpederse@gmail.com
License: MIT
-Description: Cigar
- =====
-
- cigar is a simple library for dealing with cigar strings. the most useful
- feature now is soft-masking from left or right. This allows one to adjust
- a SAM record only by changing the cigar string to soft-mask a number of bases
- such that the rest of the SAM record (pos, tlen, etc.) remain valid, but
- downstream tools will not consider the soft-masked bases in further analysis.
-
-
- ```Python
- >>> from cigar import Cigar
-
- >>> c = Cigar('100M')
- >>> len(c)
- 100
- >>> str(c)
- '100M'
- >>> list(c.items())
- [(100, 'M')]
-
-
- >>> c = Cigar('20H20M20S')
- >>> len(c)
- 40
- >>> str(c)
- '20H20M20S'
- >>> list(c.items())
- [(20, 'H'), (20, 'M'), (20, 'S')]
-
- >>> c.mask_left(29).cigar, c.cigar
- ('20H9S11M20S', '20H20M20S')
-
- >>> c = Cigar('10M20S10M')
- >>> c.mask_left(10).cigar
- '30S10M'
- >>> c.mask_left(9).cigar
- '9S1M20S10M'
- >>> Cigar('10S').mask_left(10).cigar
- '10S'
- >>> Cigar('10H').mask_left(10).cigar
- '10H'
- >>> Cigar('10H').mask_left(11).cigar
- '10H'
- >>> Cigar('10H').mask_left(9).cigar
- '10H'
-
- >>> Cigar('1M10H').mask_left(9).cigar
- '1S10H'
-
- >>> Cigar('5M10H').mask_left(9).cigar
- '5S10H'
-
- >>> c = Cigar('1S1H1S5H1S5M10H')
- >>> c.mask_left(9).cigar == c.cigar
- True
-
- >>> c = Cigar('1S1H1S5H1S5M10H')
- >>> c.mask_right(9).cigar == c.cigar
- True
- >>> c.mask_right(11).cigar
- '1S1H1S5H1S4M1S10H'
-
- ```
-
- Installation
- ============
-
- pip install cigar
-
-Platform: UNKNOWN
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 3
+License-File: LICENSE
+
+Cigar
+=====
+
+cigar is a simple library for dealing with cigar strings. the most useful
+feature now is soft-masking from left or right. This allows one to adjust
+a SAM record only by changing the cigar string to soft-mask a number of bases
+such that the rest of the SAM record (pos, tlen, etc.) remain valid, but
+downstream tools will not consider the soft-masked bases in further analysis.
+
+
+```Python
+>>> from cigar import Cigar
+
+>>> c = Cigar('100M')
+>>> len(c)
+100
+>>> str(c)
+'100M'
+>>> list(c.items())
+[(100, 'M')]
+
+
+>>> c = Cigar('20H20M20S')
+>>> len(c)
+40
+>>> str(c)
+'20H20M20S'
+>>> list(c.items())
+[(20, 'H'), (20, 'M'), (20, 'S')]
+
+>>> c.mask_left(29).cigar, c.cigar
+('20H9S11M20S', '20H20M20S')
+
+>>> c = Cigar('10M20S10M')
+>>> c.mask_left(10).cigar
+'30S10M'
+>>> c.mask_left(9).cigar
+'9S1M20S10M'
+>>> Cigar('10S').mask_left(10).cigar
+'10S'
+>>> Cigar('10H').mask_left(10).cigar
+'10H'
+>>> Cigar('10H').mask_left(11).cigar
+'10H'
+>>> Cigar('10H').mask_left(9).cigar
+'10H'
+
+>>> Cigar('1M10H').mask_left(9).cigar
+'1S10H'
+
+>>> Cigar('5M10H').mask_left(9).cigar
+'5S10H'
+
+>>> c = Cigar('1S1H1S5H1S5M10H')
+>>> c.mask_left(9).cigar == c.cigar
+True
+
+>>> c = Cigar('1S1H1S5H1S5M10H')
+>>> c.mask_right(9).cigar == c.cigar
+True
+>>> c.mask_right(11).cigar
+'1S1H1S5H1S4M1S10H'
+
+```
+
+Installation
+============
+
+ pip install cigar
+ conda install -c bioconda cigar
+
diff --git a/README.md b/README.md
index d41863e..77f4445 100644
--- a/README.md
+++ b/README.md
@@ -67,3 +67,5 @@ Installation
============
pip install cigar
+ conda install -c bioconda cigar
+
diff --git a/cigar.egg-info/PKG-INFO b/cigar.egg-info/PKG-INFO
index 7de0255..c71a999 100644
--- a/cigar.egg-info/PKG-INFO
+++ b/cigar.egg-info/PKG-INFO
@@ -1,4 +1,4 @@
-Metadata-Version: 1.1
+Metadata-Version: 2.1
Name: cigar
Version: 0.1.3
Summary: manipulate SAM cigar strings
@@ -6,77 +6,79 @@ Home-page: https://github.com/brentp/cigar
Author: Brent Pedersen
Author-email: bpederse@gmail.com
License: MIT
-Description: Cigar
- =====
-
- cigar is a simple library for dealing with cigar strings. the most useful
- feature now is soft-masking from left or right. This allows one to adjust
- a SAM record only by changing the cigar string to soft-mask a number of bases
- such that the rest of the SAM record (pos, tlen, etc.) remain valid, but
- downstream tools will not consider the soft-masked bases in further analysis.
-
-
- ```Python
- >>> from cigar import Cigar
-
- >>> c = Cigar('100M')
- >>> len(c)
- 100
- >>> str(c)
- '100M'
- >>> list(c.items())
- [(100, 'M')]
-
-
- >>> c = Cigar('20H20M20S')
- >>> len(c)
- 40
- >>> str(c)
- '20H20M20S'
- >>> list(c.items())
- [(20, 'H'), (20, 'M'), (20, 'S')]
-
- >>> c.mask_left(29).cigar, c.cigar
- ('20H9S11M20S', '20H20M20S')
-
- >>> c = Cigar('10M20S10M')
- >>> c.mask_left(10).cigar
- '30S10M'
- >>> c.mask_left(9).cigar
- '9S1M20S10M'
- >>> Cigar('10S').mask_left(10).cigar
- '10S'
- >>> Cigar('10H').mask_left(10).cigar
- '10H'
- >>> Cigar('10H').mask_left(11).cigar
- '10H'
- >>> Cigar('10H').mask_left(9).cigar
- '10H'
-
- >>> Cigar('1M10H').mask_left(9).cigar
- '1S10H'
-
- >>> Cigar('5M10H').mask_left(9).cigar
- '5S10H'
-
- >>> c = Cigar('1S1H1S5H1S5M10H')
- >>> c.mask_left(9).cigar == c.cigar
- True
-
- >>> c = Cigar('1S1H1S5H1S5M10H')
- >>> c.mask_right(9).cigar == c.cigar
- True
- >>> c.mask_right(11).cigar
- '1S1H1S5H1S4M1S10H'
-
- ```
-
- Installation
- ============
-
- pip install cigar
-
-Platform: UNKNOWN
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 3
+License-File: LICENSE
+
+Cigar
+=====
+
+cigar is a simple library for dealing with cigar strings. the most useful
+feature now is soft-masking from left or right. This allows one to adjust
+a SAM record only by changing the cigar string to soft-mask a number of bases
+such that the rest of the SAM record (pos, tlen, etc.) remain valid, but
+downstream tools will not consider the soft-masked bases in further analysis.
+
+
+```Python
+>>> from cigar import Cigar
+
+>>> c = Cigar('100M')
+>>> len(c)
+100
+>>> str(c)
+'100M'
+>>> list(c.items())
+[(100, 'M')]
+
+
+>>> c = Cigar('20H20M20S')
+>>> len(c)
+40
+>>> str(c)
+'20H20M20S'
+>>> list(c.items())
+[(20, 'H'), (20, 'M'), (20, 'S')]
+
+>>> c.mask_left(29).cigar, c.cigar
+('20H9S11M20S', '20H20M20S')
+
+>>> c = Cigar('10M20S10M')
+>>> c.mask_left(10).cigar
+'30S10M'
+>>> c.mask_left(9).cigar
+'9S1M20S10M'
+>>> Cigar('10S').mask_left(10).cigar
+'10S'
+>>> Cigar('10H').mask_left(10).cigar
+'10H'
+>>> Cigar('10H').mask_left(11).cigar
+'10H'
+>>> Cigar('10H').mask_left(9).cigar
+'10H'
+
+>>> Cigar('1M10H').mask_left(9).cigar
+'1S10H'
+
+>>> Cigar('5M10H').mask_left(9).cigar
+'5S10H'
+
+>>> c = Cigar('1S1H1S5H1S5M10H')
+>>> c.mask_left(9).cigar == c.cigar
+True
+
+>>> c = Cigar('1S1H1S5H1S5M10H')
+>>> c.mask_right(9).cigar == c.cigar
+True
+>>> c.mask_right(11).cigar
+'1S1H1S5H1S4M1S10H'
+
+```
+
+Installation
+============
+
+ pip install cigar
+ conda install -c bioconda cigar
+
diff --git a/debian/changelog b/debian/changelog
index a8b74e4..f7a42ca 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+python-cigar (0.1.3+git20190926.1.609c7f9-1) UNRELEASED; urgency=low
+
+ * New upstream snapshot.
+
+ -- Debian Janitor <janitor@jelmer.uk> Fri, 20 Jan 2023 02:13:05 -0000
+
python-cigar (0.1.3-2) unstable; urgency=medium
[ Nilesh Patra ]
diff --git a/setup.cfg b/setup.cfg
index 861a9f5..8bfd5a1 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -1,5 +1,4 @@
[egg_info]
tag_build =
tag_date = 0
-tag_svn_revision = 0
Debdiff
File lists identical (after any substitutions)
No differences were encountered in the control files