New Upstream Snapshot - r-cran-genie
Ready changes
Summary
Merged new upstream version: 1.0.5+git20220816.1.6a987ea (was: 1.0.5).
Resulting package
Built on 2022-11-07T22:53 (took 9m52s)
The resulting binary packages can be installed (if you have the apt repository enabled) by running one of:
apt install -t fresh-snapshots r-cran-genie-dbgsymapt install -t fresh-snapshots r-cran-genie
Lintian Result
- r-cran-genie-dbgsym_1.0.5+git20220816.1.6a987ea-1~jan+nus1_amd64.deb
- r-cran-genie_1.0.5+git20220816.1.6a987ea-1~jan+nus1.dsc
- r-cran-genie_1.0.5+git20220816.1.6a987ea-1~jan+nus1_amd64.buildinfo
- r-cran-genie_1.0.5+git20220816.1.6a987ea-1~jan+nus1_amd64.deb
- r-cran-genie_1.0.5+git20220816.1.6a987ea-1~jan+nus1_amd64.changes
Diff
diff --git a/.nojekyll b/.nojekyll
new file mode 100644
index 0000000..e69de29
diff --git a/DESCRIPTION b/DESCRIPTION
index 8657021..527b60d 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,8 +1,8 @@
Package: genie
Type: Package
Title: Fast, Robust, and Outlier Resistant Hierarchical Clustering
-Version: 1.0.5
-Date: 2020-08-02
+Version: 1.0.6.9001
+Date: 2022-08-16
Authors@R: c(
person("Marek", "Gagolewski",
role = c("aut", "cre", "cph"),
@@ -25,10 +25,12 @@ Description: Includes the reference implementation of Genie - a hierarchical
linkage approach, therefore it is also suitable for analysing larger data sets.
For more details see (Gagolewski et al. 2016 <DOI:10.1016/j.ins.2016.05.003>).
For an even faster and more feature-rich implementation, including,
- amongst others, noise point detection, see the 'genieclust' package.
+ amongst others, noise point detection, see the 'genieclust' package
+ (Gagolewski, 2021 <DOI:10.1016/j.softx.2021.100722>).
License: GPL (>= 3)
BugReports: http://github.com/gagolews/genie/issues
URL: http://genieclust.gagolewski.com/
+ https://github.com/gagolews/genie
Depends: R (>= 3.3.0), stats, genieclust
Imports: Rcpp (>= 1.0.0)
Suggests: datasets, testthat, stringi
@@ -36,11 +38,9 @@ LinkingTo: Rcpp (>= 1.0.0)
SystemRequirements: OpenMP, C++11
RoxygenNote: 7.1.1
NeedsCompilation: yes
-Packaged: 2020-08-02 09:13:53 UTC; gagolews
+Packaged: 2022-11-07 22:46:10 UTC; root
Author: Marek Gagolewski [aut, cre, cph]
(<https://orcid.org/0000-0003-0637-6028>),
Maciej Bartoszuk [aut] (<https://orcid.org/0000-0001-6088-8273>),
Anna Cena [aut] (<https://orcid.org/0000-0001-8697-5383>)
Maintainer: Marek Gagolewski <marek@gagolewski.com>
-Repository: CRAN
-Date/Publication: 2020-08-02 22:00:02 UTC
diff --git a/MD5 b/MD5
deleted file mode 100644
index bfa3145..0000000
--- a/MD5
+++ /dev/null
@@ -1,33 +0,0 @@
-42663de693e865e7d0359c0611c5074c *DESCRIPTION
-0cce106eda8a0102d80da3495233fff5 *NAMESPACE
-b74c80fc9c4aa3d5d524e4050ccf5812 *NEWS
-1d29001a8b2960673856de5c93b19fc8 *R/RcppExports.R
-b67df35b878a09622912e1d4257d02f4 *R/genie-package.R
-676112538af4b9f23f29eb34b944cac8 *R/hclust2.R
-dabba701ca604243b3ff0a8f445f0c4e *inst/CITATION
-823b6d1e4cdb4eeab91127f8055e6052 *man/genie-package.Rd
-6d608dc47d2afecbcf787557af0e549d *man/hclust2.Rd
-d75f89b94a6d7b50ade66d8acfb955f2 *src/Makevars
-d75f89b94a6d7b50ade66d8acfb955f2 *src/Makevars.win
-19595723ebd770cb008437d80d8cf603 *src/RcppExports.cpp
-2925a32b678e40604b768a715a1b2455 *src/defs.h
-23c393db11c830fe05d0698856cf6687 *src/disjoint_sets.cpp
-b14644229bf9a2b90ba7b245c6399fd6 *src/disjoint_sets.h
-2ca9c30a531dc4d8c9fbd557a6fecbc6 *src/hclust2_common.cpp
-ddf7842901942ddb16bff5c4339d9ba3 *src/hclust2_common.h
-88f82667150c32870d846b3042b06f0e *src/hclust2_distance.cpp
-957ad5898889dc1c55b1dd7a150b7d2c *src/hclust2_distance.h
-773d5732fa8ad1fd66a6dcadaa086f4e *src/hclust2_mstbased_gini.cpp
-2b9fe7f10fefe66ee37cd2d784204533 *src/hclust2_mstbased_gini.h
-9dbab5f188885666c8489d169b64e0ed *src/hclust2_nnbased_gini.h
-b919f4e167d7d5b17372e4924b47a943 *src/hclust2_nnbased_single.cpp
-01bf361ff1d8931b6bd1c22b4bc584d7 *src/hclust2_nnbased_single.h
-d1d4fc221e82d968d2721e6c9b8a8ec5 *src/hclust2_rcpp_gini.cpp
-6a68439aa9f73384d5b922ad1047b997 *src/hclust2_result.cpp
-ef839ef7e7408b73ff91774efb1b5ffd *src/hclust2_result.h
-163a032a3ac62850bbb72dfe930a7fd5 *src/hclust2_vptree_gini.h
-d7dba4d9802a3c40390cdcc30c4962dc *src/hclust2_vptree_single.cpp
-9463bd5793842b9cfc79330931c7aebe *src/hclust2_vptree_single.h
-f42c9bc4435bb983274895a0f4fc9255 *src/init.cpp
-ac0b48e83e47e2efe2d9e15b791155ac *tests/testthat.R
-5a2370f089507fe281c93e3c512a0314 *tests/testthat/test-single.R
diff --git a/NEWS b/NEWS
index 1427fe1..5245308 100644
--- a/NEWS
+++ b/NEWS
@@ -1,6 +1,13 @@
genie package NEWS and CHANGELOG
===============================================================================
+
+## 1.0.6 (under development)
+
+* ... (nothing yet)
+
+
+
## 1.0.5 (2020-08-02)
* Updated documentation and package metadata.
diff --git a/debian/changelog b/debian/changelog
index fe8a8dd..4e0f243 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+r-cran-genie (1.0.5+git20220816.1.6a987ea-1) UNRELEASED; urgency=low
+
+ * New upstream snapshot.
+
+ -- Debian Janitor <janitor@jelmer.uk> Mon, 07 Nov 2022 22:46:12 -0000
+
r-cran-genie (1.0.5-2) unstable; urgency=medium
* Standards-Version: 4.5.1 (routine-update)
diff --git a/src/hclust2_distance.cpp b/src/hclust2_distance.cpp
index d5c8f70..76af244 100644
--- a/src/hclust2_distance.cpp
+++ b/src/hclust2_distance.cpp
@@ -546,7 +546,7 @@ StringDistanceDouble::StringDistanceDouble(const Rcpp::List& vectors) :
items[i] = REAL(cur);
for (size_t j=0; j<lengths[i]; ++j)
- if (items[i][j] == NA_REAL)
+ if (ISNA(items[i][j]))
Rcpp::stop("missing values in input objects are not allowed");
}
}
Debdiff
[The following lists of changes regard files as different if they have different names, permissions or owners.]
Files in second set of .debs but not in first
-rw-r--r-- root/root /usr/lib/debug/.build-id/3f/2f83c82f5cbde7cf27cf0c7cefec2a4bd1d2ac.debug
Files in first set of .debs but not in second
-rw-r--r-- root/root /usr/lib/debug/.build-id/e1/bd791ccc68038f98aa5f35bf0adffc80376e73.debug
Control files of package r-cran-genie: lines which differ (wdiff format)
Depends: r-base-core (>= 4.3.0-1~jan+lint2), 4.2.2-1), r-api-4.0, r-cran-genieclust, r-cran-rcpp (>= 1.0.0), libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 11)
Control files of package r-cran-genie-dbgsym: lines which differ (wdiff format)
Build-Ids: e1bd791ccc68038f98aa5f35bf0adffc80376e73 3f2f83c82f5cbde7cf27cf0c7cefec2a4bd1d2ac