New Upstream Snapshot - r-cran-r.rsp
Ready changes
Summary
Merged new upstream version: 0.45.0+git20230102.1.4fe30df+ds (was: 0.45.0+ds).
Resulting package
Built on 2023-01-15T05:10 (took 37m48s)
The resulting binary packages can be installed (if you have the apt repository enabled) by running one of:
apt install -t fresh-snapshots r-cran-r.rsp
Lintian Result
Diff
diff --git a/DESCRIPTION b/DESCRIPTION
index 2e06cfc..e8bf96c 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,5 +1,5 @@
Package: R.rsp
-Version: 0.45.0
+Version: 0.45.0-9001
Depends: R (>= 2.14.0)
Imports: methods, stats, tools, utils, R.methodsS3 (>= 1.8.0), R.oo (>=
1.23.0), R.utils, R.cache, digest
@@ -13,10 +13,9 @@ Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Description: The RSP markup language makes any text-based document come alive. RSP provides a powerful markup for controlling the content and output of LaTeX, HTML, Markdown, AsciiDoc, Sweave and knitr documents (and more), e.g. 'Today's date is <%=Sys.Date()%>'. Contrary to many other literate programming languages, with RSP it is straightforward to loop over mixtures of code and text sections, e.g. in month-by-month summaries. RSP has also several preprocessing directives for incorporating static and dynamic contents of external files (local or online) among other things. Functions rstring() and rcat() make it easy to process RSP strings, rsource() sources an RSP file as it was an R script, while rfile() compiles it (even online) into its final output format, e.g. rfile('report.tex.rsp') generates 'report.pdf' and rfile('report.md.rsp') generates 'report.html'. RSP is ideal for self-contained scientific reports and R package vignettes. It's easy to use - if you know how to write an R script, you'll be up and running within minutes.
License: LGPL (>= 2.1)
-URL: https://github.com/HenrikBengtsson/R.rsp
+URL: https://henrikbengtsson.github.io/R.rsp/,
+ https://github.com/HenrikBengtsson/R.rsp
BugReports: https://github.com/HenrikBengtsson/R.rsp/issues
LazyLoad: TRUE
NeedsCompilation: no
-Packaged: 2022-06-27 17:46:28 UTC; hb
-Repository: CRAN
-Date/Publication: 2022-06-27 18:30:09 UTC
+Packaged: 2023-01-15 04:37:57 UTC; root
diff --git a/MD5 b/MD5
deleted file mode 100644
index d02499f..0000000
--- a/MD5
+++ /dev/null
@@ -1,432 +0,0 @@
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-b5d5316a2d6ccc91a26b7f51a1e8ea59 *vignettes/RSP_intro.html.rsp
-496bacd80ff7892ba4af61c103b0b062 *vignettes/RSP_refcard.tex.rsp
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-7dc5a5a3f14ae632e64b846a2383c007 *vignettes/R_packages-RSP_vignettes.md.rsp
-05d9cd9db1827f3865778761f2849179 *vignettes/R_packages-Static_PDF_and_HTML_vignettes.pdf.asis
-2c70a263542dfebc7760204ab3c8e1c9 *vignettes/R_packages-Vignettes_prior_to_R300.tex.rsp
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diff --git a/NEWS.md b/NEWS.md
index 573bc6d..ef6d3f0 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,3 +1,11 @@
+# Version (development version)
+
+## Significant Changes
+
+ * Drop 'R packages: Vignettes prior to R 3.0.0' vignette. R 3.0.0 was
+ released on 2013-04-03.
+
+
# Version 0.45.0 [2022-06-27]
## Bug Fixes
diff --git a/debian/changelog b/debian/changelog
index 8a84697..f63115c 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+r-cran-r.rsp (0.45.0+git20230102.1.4fe30df+ds-1) UNRELEASED; urgency=low
+
+ * New upstream snapshot.
+
+ -- Debian Janitor <janitor@jelmer.uk> Sun, 15 Jan 2023 04:42:50 -0000
+
r-cran-r.rsp (0.45.0+ds-1) unstable; urgency=medium
* Team upload.
diff --git a/debian/patches/national-encoding.patch b/debian/patches/national-encoding.patch
index 2ae20c1..62cb17a 100644
--- a/debian/patches/national-encoding.patch
+++ b/debian/patches/national-encoding.patch
@@ -5,9 +5,11 @@ Author: Doug Torrance <dtorrance@debian.org>
Forwarded: https://github.com/HenrikBengtsson/R.rsp/pull/45
Last-Update: 2021-12-03
---- a/inst/rsp/R/system/packageDetails.html.rsp
-+++ b/inst/rsp/R/system/packageDetails.html.rsp
-@@ -47,7 +47,7 @@
+Index: r-cran-r.rsp.git/inst/rsp/R/system/packageDetails.html.rsp
+===================================================================
+--- r-cran-r.rsp.git.orig/inst/rsp/R/system/packageDetails.html.rsp
++++ r-cran-r.rsp.git/inst/rsp/R/system/packageDetails.html.rsp
+@@ -47,7 +47,7 @@ Package:
# Linkify all http:// words.
details <- lapply(details, FUN=function(x) {
diff --git a/debian/patches/no-sys-time.patch b/debian/patches/no-sys-time.patch
index 5a13491..c1f8959 100644
--- a/debian/patches/no-sys-time.patch
+++ b/debian/patches/no-sys-time.patch
@@ -3,8 +3,10 @@ Author: Doug Torrance <dtorrance@debian.org>
Forwarded: not-needed
Last-Update: 2022-03-08
---- a/vignettes/Dynamic_document_creation_using_RSP.tex.rsp
-+++ b/vignettes/Dynamic_document_creation_using_RSP.tex.rsp
+Index: r-cran-r.rsp.git/vignettes/Dynamic_document_creation_using_RSP.tex.rsp
+===================================================================
+--- r-cran-r.rsp.git.orig/vignettes/Dynamic_document_creation_using_RSP.tex.rsp
++++ r-cran-r.rsp.git/vignettes/Dynamic_document_creation_using_RSP.tex.rsp
@@ -1062,7 +1062,6 @@ for (kk in 1:3) \{
cat("Iteration #", kk, "{\bs}n", sep="")
\}
@@ -21,8 +23,10 @@ Last-Update: 2022-03-08
type <- "horse"; # Comments are dropped
type
})%>
---- a/vignettes/RSP_intro.html.rsp
-+++ b/vignettes/RSP_intro.html.rsp
+Index: r-cran-r.rsp.git/vignettes/RSP_intro.html.rsp
+===================================================================
+--- r-cran-r.rsp.git.orig/vignettes/RSP_intro.html.rsp
++++ r-cran-r.rsp.git/vignettes/RSP_intro.html.rsp
@@ -447,8 +447,6 @@ Session info:
<% print(sessionInfo()) %>
```
diff --git a/debian/patches/remark.patch b/debian/patches/remark.patch
index 7571ada..95eacab 100644
--- a/debian/patches/remark.patch
+++ b/debian/patches/remark.patch
@@ -5,9 +5,11 @@ Author: Doug Torrance <dtorrance@debian.org>
Forwarded: not-needed
Last-Update: 2022-03-07
---- a/vignettes/RSP_intro.html.rsp
-+++ b/vignettes/RSP_intro.html.rsp
-@@ -45,7 +45,6 @@
+Index: r-cran-r.rsp.git/vignettes/RSP_intro.html.rsp
+===================================================================
+--- r-cran-r.rsp.git.orig/vignettes/RSP_intro.html.rsp
++++ r-cran-r.rsp.git/vignettes/RSP_intro.html.rsp
+@@ -45,7 +45,6 @@ devOptions("png", width = 840)
---
# <%= title %>
@@ -15,7 +17,7 @@ Last-Update: 2022-03-07
<% } # slide() %>
<!DOCTYPE html>
-@@ -452,7 +451,7 @@
+@@ -452,7 +451,7 @@ These slides were generated using `R.rsp
</textarea>
diff --git a/debian/patches/reproducible-pdf.patch b/debian/patches/reproducible-pdf.patch
index 63b2424..3da6cb6 100644
--- a/debian/patches/reproducible-pdf.patch
+++ b/debian/patches/reproducible-pdf.patch
@@ -5,8 +5,10 @@ Author: Doug Torrance <dtorrance@debian.org>
Forwarded: https://github.com/HenrikBengtsson/R.rsp/pull/44
Last-Update: 2021-12-03
---- a/vignettes/Dynamic_document_creation_using_RSP.tex.rsp
-+++ b/vignettes/Dynamic_document_creation_using_RSP.tex.rsp
+Index: r-cran-r.rsp.git/vignettes/Dynamic_document_creation_using_RSP.tex.rsp
+===================================================================
+--- r-cran-r.rsp.git.orig/vignettes/Dynamic_document_creation_using_RSP.tex.rsp
++++ r-cran-r.rsp.git/vignettes/Dynamic_document_creation_using_RSP.tex.rsp
@@ -153,6 +153,8 @@ devOptions("png", width=840)
\author{<%@meta name="author"%>}
\date{<%=format(as.Date(R.rsp$date), format="%B %d, %Y")%>}
diff --git a/debian/patches/source-date-epoch.patch b/debian/patches/source-date-epoch.patch
index 75d8b9f..ff63071 100644
--- a/debian/patches/source-date-epoch.patch
+++ b/debian/patches/source-date-epoch.patch
@@ -4,8 +4,10 @@ Author: Doug Torrance <dtorrance@debian.org>
Forwarded: not-needed
Last-Update: 2022-03-07
---- a/vignettes/Dynamic_document_creation_using_RSP.tex.rsp
-+++ b/vignettes/Dynamic_document_creation_using_RSP.tex.rsp
+Index: r-cran-r.rsp.git/vignettes/Dynamic_document_creation_using_RSP.tex.rsp
+===================================================================
+--- r-cran-r.rsp.git.orig/vignettes/Dynamic_document_creation_using_RSP.tex.rsp
++++ r-cran-r.rsp.git/vignettes/Dynamic_document_creation_using_RSP.tex.rsp
@@ -426,7 +426,7 @@ The RSP markup \code{<\%=\content{code c
\begin{rspVerbatim}
Today's date is <\%=Sys.Date()\%>
diff --git a/vignettes/R_packages-Vignettes_prior_to_R300.tex.rsp b/vignettes/R_packages-Vignettes_prior_to_R300.tex.rsp
deleted file mode 100644
index 11b7760..0000000
--- a/vignettes/R_packages-Vignettes_prior_to_R300.tex.rsp
+++ /dev/null
@@ -1,151 +0,0 @@
-<%@meta language="R-vignette" content="--------------------------------
- DIRECTIVES FOR R:
-
- %\VignetteIndexEntry{R packages: Vignettes prior to R 3.0.0}
- %\VignetteAuthor{Henrik Bengtsson}
- %\VignetteKeyword{R}
- %\VignetteKeyword{package}
- %\VignetteKeyword{vignette}
- %\VignetteKeyword{RSP}
- %\VignetteEngine{R.rsp::rsp}
- %\VignetteTangle{FALSE}
---------------------------------------------------------------------"%>
-
-<% t0 <- Sys.time() %>
-
-<%
-R.rsp <- R.oo::Package("R.rsp");
-%>
-
-\documentclass[12pt]{article}
-\usepackage{xspace}
-\usepackage{alltt}
-
-% Adjust margins
-\addtolength{\oddsidemargin}{-0.5in}
-\addtolength{\evensidemargin}{-0.5in}
-\addtolength{\textwidth}{1in}
-\addtolength{\topmargin}{-0.5in}
-\addtolength{\textheight}{1in}
-
-% Drop PTEX metadata (for reproducbility)
-\pdfsuppressptexinfo=-1
-
-\newcommand{\keywords}[1]{\footnotesize{\textbf{Keywords: }#1}\xspace}
-\newcommand{\pkg}[1]{\textsl{#1}\xspace}
-\newcommand{\file}[1]{\textsl{#1}\xspace}
-\newcommand{\code}[1]{\texttt{#1}\xspace}
-\newcommand{\bs}{$\backslash$}
-
-\newenvironment{rspVerbatim}{\vspace{-\parskip}\begin{alltt}\color{blue}}{\end{alltt}}
-\newenvironment{escapeRspVerbatim}{\vspace{-\parskip}\begin{alltt}}{\end{alltt}}
-
-
-\title{<%@meta name="title"%>}
-\author{<%@meta name="author"%>}
-\date{<%=format(as.Date(R.rsp$date), format="%B %d, %Y")%>}
-
-\begin{document}
-
-\maketitle
-
-<%-------------------------------------------------------------------
- INTRODUCTION
- -------------------------------------------------------------------%>
-\section*{Introduction}
-
-When building an R package, Sweave/LaTeX vignettes are recognized by R, compiled into PDFs, which are listed along with their source in the R help system, e.g. \code{help.start()}. These package vignettes are also being listed online on the CRAN and Bioconductor package pages. As of R~v3.0.0, it is straighforward to also include vignettes of other type, include RSP-embedded vignettes.
-
-For legacy versions of R prior to R v3.0.0 (released April 2013), some efforts have to be made to build and incorporate non-Sweave vignettes. This document describes how to include RSP and other non-Sweave vignettes in R packages in a way that is fully compatible with legacy and more recent versions of R. By following these instructions, the exact same package setup can be used regardless of R version and they work for any type of R vignettes, e.g. RSP, knitr and noweb.
-
-
-<%-------------------------------------------------------------------
- HOW TO
- -------------------------------------------------------------------%>
-\section*{How to}
-
-We assume that you are already familiar with how to use non-Sweave vignettes in R for R v3.0.0 and later. If not, please see other \pkg{R.rsp} vignettes on this topic as well as 'Writing R Extensions' part of the built-in R documention. This document explains the \emph{additional steps} needed in order to for non-Sweave vignettes work also in version prior to R~v3.0.0.
-More precisely, the following three files need to be available "as is" in the \file{vignettes/} directory of the package:
-\begin{enumerate}
- \item \file{dummy.Rnw}: A "dummy" Sweave vignette file triggering R's vignette installation procedures, and
- \item \file{Makefile}: A file with instructions emulating the post-3.0.0 R vignette mechanisms, and
- \item \file{.install\_extras}: A file specifying which (source and generated output) vignette files to \emph{install}\footnote{The term \emph{install} is used for vignettes to make it explicit that the orignal source files are located in \file{vignettes/}, but when compiled are copied together with the output files to \file{inst/doc/} of the built package. Directory \file{vignettes/} is \emph{not} installed to, and therefore not available in, the built package.}.
-\end{enumerate}
-These files can be copied from the \pkg{R.rsp} package (see Appendix for their content) to the new package's \file{vignettes/} directory using:
-\begin{verbatim}
-filenames <- c("dummy.Rnw", "Makefile", ".install_extras")
-<% pathMk <- file.path("doc", "templates", fsep="/"); %>
-pathS <- system.file("<%=pathMk%>", package="R.rsp")
-pathD <- "vignettes"
-dir.create(pathD)
-pathnamesS <- file.path(pathS, gsub("^[.]", ",", filenames))
-pathnamesD <- file.path(pathD, filenames)
-file.copy(pathnamesS, to=pathnamesD)
-\end{verbatim}
-Neither of these files need to be edited\footnote{The reason for the \code{gsub()} renaming is because R does not allow the last file to installed starting with a period. Instead with use a comma as a workaround.}. Note that the Makefile and the functions it utilizes are independent of the RSP markup language why it can also be used for other vignette formats as well.
-The use of custom \file{vignettes/Makefile} and \file{vignettes/.install\_extras} files is described in Section `Writing package vignettes' of `Writing R Extensions'.
-
-
-\subsection*{Improved HTML overview of vignettes}
-By default, the R HTML help system will list links to the PDF and the Sweave source of the vignettes. This means that also the dummy Rnw stub needed will also be listed. As explained in `Writing R Extensions', it is possible to override this by providing a custom \file{vignettes/index.html} file. It can be tedious the manually edit the \file{index.html} file. For this reason, if the \file{index.html} file is missing, then the above \file{Makefile} automatically builds one (using RSP-embedded HTML) and populates it with the PDF and source files available according to what the vignette files specify (see also the Appendix).
-
-
-
-<%-------------------------------------------------------------------
- APPENDIX
- -------------------------------------------------------------------%>
-\clearpage
-\section*{Appendix}
-\subsection*{The generic Makefile file}
-The customized and generic \file{Makefile} that builds non-Sweave vignettes and any missing \file{index.html} file is available in \pkg{R.rsp} package directory \file{<%=pathMk%>/}. This \file{Makefile} should be copied ``as is'' to \file{vignettes/} of your package. Its content is:
-{\scriptsize\begin{verbatim}
-<%=
-pathname <- system.file(pathMk, "Makefile", package="R.rsp");
-bfr <- readLines(pathname, warn=FALSE);
-rr <- grep("^# HISTORY", bfr);
-if (length(rr) > 0) {
- bfr <- bfr[1:(rr-2L)];
-}
-bfr <- gsub("\t", " ", bfr, fixed=TRUE);
-paste(bfr, collapse="\n");
-%>
-\end{verbatim}}
-
-
-\subsection*{The generic .install\_extras file}
-The \file{vignettes/.install\_extras} file controls which source and output vignette files should be installed and therefore be copied to the \file{inst/doc/} directory of the built package. The generic \file{.install\_extras} file, available in \pkg{R.rsp} package directory \file{<%=pathMk%>/}, contains:
-{\scriptsize\begin{verbatim}
-<%=
-pathname <- system.file(pathMk, ",install_extras", package="R.rsp");
-bfr <- readLines(pathname, warn=FALSE);
-rr <- grep("^# HISTORY", bfr);
-if (length(rr) > 0) {
- bfr <- bfr[1:(rr-2L)];
-}
-bfr <- gsub("\t", " ", bfr, fixed=TRUE);
-paste(bfr, collapse="\n");
-%>
-\end{verbatim}}
-
-
-\subsection*{The "trigger" dummy.Rnw file}
-The "dummy" Sweave source file \file{dummy.Rnw} file available by in \pkg{R.rsp} package directory \file{<%=pathMk%>/}, which triggers R's vignette installation mechanism to process the \file{vignettes/Makefile}, contains:
-{\scriptsize\begin{verbatim}
-<%=
-pathname <- system.file(pathMk, "dummy.Rnw", package="R.rsp");
-bfr <- readLines(pathname, warn=FALSE);
-rr <- grep("^# HISTORY", bfr);
-if (length(rr) > 0) {
- bfr <- bfr[1:(rr-2L)];
-}
-bfr <- gsub("\t", " ", bfr, fixed=TRUE);
-paste(bfr, collapse="\n");
-%>
-\end{verbatim}}
-
-
-\subsection*{Session information}
-<%=toLatex(sessionInfo())%>
-This report was automatically generated using \code{rfile()} of the R.rsp package.
-
-\end{document}
Debdiff
[The following lists of changes regard files as different if they have different names, permissions or owners.]
Files in first set of .debs but not in second
-rw-r--r-- root/root /usr/lib/R/site-library/R.rsp/doc/R_packages-Vignettes_prior_to_R300.R -rw-r--r-- root/root /usr/lib/R/site-library/R.rsp/doc/R_packages-Vignettes_prior_to_R300.pdf -rw-r--r-- root/root /usr/lib/R/site-library/R.rsp/doc/R_packages-Vignettes_prior_to_R300.tex.rsp
No differences were encountered in the control files