skip-cluster-test.patch: add; skip due to mismatched output.
Étienne Mollier
1 year, 5 months ago
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run-debian-spades-wrapper.patch
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port-to-pytest.patch
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mpileup-1.16.patch
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skip-cluster-test.patch
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Description: skip tests using dataset from older samtools mpileup
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This will need to be reverted once new upstream versions support htslib /
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samtools / bcftools 1.16.
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Author: Étienne Mollier <emollier@debian.org>
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Bug: https://github.com/sanger-pathogens/ariba/issues/327
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Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1022508
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Forwarded: not-needed
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Last-Update: 2022-11-28
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---
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This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
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--- ariba.orig/ariba/tests/cluster_test.py
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+++ ariba/ariba/tests/cluster_test.py
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@@ -2,6 +2,7 @@
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import os
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import shutil
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import filecmp
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+import pytest
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from ariba import cluster, common, reference_data
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modules_dir = os.path.dirname(os.path.abspath(cluster.__file__))
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@@ -28,6 +29,7 @@
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os.unlink(full_path)
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+@pytest.mark.skip(reason="test crafted for older samtools versions.")
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class TestCluster(unittest.TestCase):
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def test_init_fail_files_missing(self):
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'''test init_fail_files_missing'''
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