Tree @fresh-snapshots/main (Download .tar.gz)
- ..
- ext
- tasks
- tb_data
- test_run_data
- tests
- __init__.py
- aln_to_metadata.py
- assembly.py
- assembly_compare.py
- assembly_variants.py
- bam_parse.py
- card_record.py
- cdhit.py
- cluster.py
- clusters.py
- common.py
- external_progs.py
- faidx.py
- flag.py
- histogram.py
- link.py
- mapping.py
- megares_data_finder.py
- megares_zip_parser.py
- mic_plotter.py
- mlst_profile.py
- mlst_reporter.py
- pubmlst_getter.py
- pubmlst_ref_preparer.py
- read_filter.py
- read_store.py
- ref_genes_getter.py
- ref_preparer.py
- ref_seq_chooser.py
- refdata_query.py
- reference_data.py
- report.py
- report_filter.py
- report_flag_expander.py
- samtools_variants.py
- scaffold_graph.py
- sequence_metadata.py
- sequence_variant.py
- summary.py
- summary_cluster.py
- summary_cluster_variant.py
- summary_sample.py
- tb.py
- versions.py
- vfdb_parser.py
History of ariba @fresh-snapshots/main
- Merge pull request #289 from fmaguire/master Christoph Püthe (commit: GitHub) 3 years ago
- Bug fix to handle megares 2.0.0 file name and format changes Martin Hunt 3 years ago
- Update CARD citation message Finlay Maguire 4 years ago
- Merge pull request #1 from sanger-pathogens/master Anthony Underwood (commit: GitHub) 4 years ago
- Correct mixed up col_filter and row_filter Anthony Underwood (commit: GitHub) 4 years ago
- Fixed GitHub issue #281 - ARG-ANNOT Fails to Download. _get_from_argannot method has been updated accordingly “kpepper” 4 years ago
- Fix for issue #278 version 2 “kpepper” 4 years ago
- Fix for issue 263 - Ariba shutting down on receipt of SIGTSTP/SIGCONT “kpepper” 4 years ago
- Changed SIGPIPE signal handling “kpepper” 4 years ago
- Removed call to sys.stderr, updated travis.yml py3.6 schultzm 4 years ago
- Removed print statement under ncbi_getter schultzm 4 years ago
- Added unittest for ncbi schultzm 4 years ago
- creating ncbi test on branch schultzm 4 years ago
- Fixed merged of setup.py into ncbi branch on fork schultzm 4 years ago
- Modified Spades invocation to force running with Python 3 (fix for Sanger environment) “kpepper” 5 years ago
- Revert "Changed x's to upper case to see if this fixes the Docker build" “kpepper” 5 years ago
- Changed x's to upper case to see if this fixes the Docker build “kpepper” 5 years ago
- Fixed some tests for the Docker build “kpepper” 5 years ago
- Added some debug to track Docker test errors “kpepper” 5 years ago
- Changed some test asserts “kpepper” 5 years ago
- Added ability to set CD-HIT memory limit on the command line - Issue #255 “kpepper” 5 years ago
- Changed awk usage to gawk as awk does not support bitwise operations on OS X, leading to test failures “kpepper” 5 years ago
- Use latest panel files Martin Hunt 5 years ago
- Update tb panel with gyrA_D94A cipro resistance Martin Hunt 5 years ago
- Update TB panel to match new mykrobe panel Martin Hunt 5 years ago
- Fix linebreaks in resfinder fastas Martin Hunt 5 years ago
- bug fix getting drug name from report.tsv Martin Hunt 5 years ago
- New task prepareref_tb Martin Hunt 5 years ago
- New function make_prepareref_dir Martin Hunt 5 years ago
- Replace upstream variant with original mutation Martin Hunt 5 years ago