Codebase list barrnap / 006b580
sed hack for tests on old bedtools Torsten Seemann 5 years ago
1 changed file(s) with 2 addition(s) and 6 deletion(s). Raw diff Collapse all Expand all
+2
-6
.travis.yml less more
1010 perl:
1111 - "5.26"
1212
13 before_install:
14 - "wget -q http://eddylab.org/software/hmmer3/3.1b2/hmmer-3.1b2-linux-intel-x86_64.tar.gz"
15
1613 install:
17 - "tar zxf hmmer-3.1b2-linux-intel-x86_64.tar.gz"
18 - "export PATH=$PWD/bin:$PWD/hmmer-3.1b2-linux-intel-x86_64/binaries:$PATH"
14 - "export PATH=$PWD/bin:$PATH"
15 - "sed -i~ -e 's/-name+/-name/' bin/barrnap"
1916
2017 script:
2118 - "barrnap --version"
3633 - "barrnap --threads 2 examples/small.fna"
3734 - "barrnap -q --incseq examples/small.fna | grep '^>'"
3835 - "barrnap -q --outseq hits.fa < examples/small.fna && head -n3 hits.fa"
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