refresh patch
Sascha Steinbiss
7 years ago
| 0 | 0 | Description: Do not rely on path location relative to barrnap executable |
| 1 | 1 | --- a/bin/barrnap |
| 2 | 2 | +++ b/bin/barrnap |
| 3 | @@ -14,9 +14,14 @@ | |
| 3 | @@ -14,6 +14,9 @@ | |
| 4 | 4 | my $AUTHOR = 'Torsten Seemann <torsten.seemann@gmail.com>'; |
| 5 | my $URL = 'https://github.com/Victorian-Bioinformatics-Consortium/barrnap'; | |
| 5 | my $URL = 'https://github.com/tseemann/barrnap'; | |
| 6 | 6 | my $DBDIR = "$FindBin::RealBin/../db"; |
| 7 | 7 | +if ( ! -e $DBDIR) { |
| 8 | 8 | + $DBDIR = "/usr/share/barrnap/db"; |
| 9 | 9 | +} |
| 10 | 10 | my $OPSYS = $^O; |
| 11 | my $NHMMER = "$FindBin::RealBin/../binaries/$OPSYS/nhmmer"; | |
| 12 | - | |
| 13 | +if ( ! -e $NHMMER ) { | |
| 14 | + $NHMMER = "/usr/bin/nhmmer"; | |
| 15 | +} | |
| 16 | my %KINGDOM = (map { substr($_,0,1) => $_ } qw(bac arc euk mito)); | |
| 17 | my %LENG = ( | |
| 18 | "5S_rRNA" =>119, "16S_rRNA"=>1585, "23S_rRNA"=>3232, | |
| 11 | my $BINDIR = "$FindBin::RealBin/../binaries/$OPSYS"; | |
| 12 |