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lintian-fixes/main

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name    = Bio-Tradis
author  = Carla Cummins <path-help@sanger.ac.uk>
license = GPL_3
copyright_holder = Wellcome Trust Sanger Institute
copyright_year   = 2013
version = 1.4.5

[MetaResources]
homepage        = http://www.sanger.ac.uk/
repository.web  = https://github.com/sanger-pathogens/Bio-Tradis
repository.url  = https://github.com/sanger-pathogens/Bio-Tradis.git
repository.type = git

[RequiresExternal]
requires = awk
requires = samtools
requires = gunzip
requires = gzip
requires = smalt
requires = tabix

[@Git]
[@Starter]
[RunExtraTests]
[AutoPrereqs]

[FileFinder::ByName / BinNotR]
dir = bin
skip = .*\.R$

[PodWeaver]
finder = :InstallModules
finder = BinNotR

[PkgVersion]

[Encoding]
filename = t/data/AddTags/expected_tradis.bam
filename = t/data/AddTags/sample_sm_tr.bam
filename = t/data/AddTags/sample_sm_no_tr.bam
filename = t/data/CombinePlots/sample1.sm.plot.gz
filename = t/data/CombinePlots/sample2.sm.plot.gz
filename = t/data/DetectTags/sample_sm_tr.bam
filename = t/data/DetectTags/sample_sm_no_tr.bam
filename = t/data/FilterTags/sample.fastq.gz
filename = t/data/InsertSite/small_multi_sequence.bam
filename = t/data/Parsers/test.bam
filename = t/data/RunTradisBWA/expected.1mm.plot.gz
filename = t/data/RunTradisBWA/expected.plot.gz
filename = t/data/RunTradisBWA/test.tagged.fastq.gz
filename = t/data/RunTradisBWA/test2.tagged.fastq.gz
filename = t/data/RunTradisSmalt/expected.1mm.plot.gz
filename = t/data/RunTradisSmalt/expected.plot.gz
filename = t/data/RunTradisSmalt/test.tagged.fastq.gz
filename = t/data/RunTradisSmalt/test2.tagged.fastq.gz
filename = t/data/RunTradisTaglessBWA/expected.plot.gz
filename = t/data/RunTradisTaglessSmalt/expected.plot.gz
filename = t/data/TradisPlot/expected.plot.gz
filename = t/data/TradisPlot/test.mapped.bam
filename = t/data/AddTags/expected_tradis.cram
filename = t/data/DetectTags/sample_sm_tr.cram
filename = t/data/DetectTags/AE004091.fasta
filename = t/data/DetectTags/AE004091.fasta.fai
filename = t/data/AddTags/sample_sm_tr.cram
filename = t/data/CombinePlots/tabix_sorted.insert_site_plot.gz.tbi
filename = t/data/CombinePlots/tabix_sorted.insert_site_plot.gz
filename = t/data/InsertSite/2_reads.bam
encoding = bytes