Tree @HEAD (Download .tar.gz)

• asa103
• debian
• _release_Makefile
• ArgumentParser.cpp
• ArgumentParser.h
• biocUpdate.sh
• changeList
• checkTR.py
• CollapsedSampler.cpp
• CollapsedSampler.h
• common.cpp
• common.h
• convertSamples.cpp
• estimateDE.cpp
• estimateExpression.cpp
• estimateHyperPar.cpp
• estimateVBExpression.cpp
• extractSamples.cpp
• extractTranscriptInfo.py
• FileHeader.cpp
• FileHeader.h
• getCounts.py
• getFoldChange.cpp
• getGeneExpression.cpp
• getPPLR.cpp
• getVariance.cpp
• getWithinGeneExpression.cpp
• GibbsParameters.cpp
• GibbsParameters.h
• GibbsSampler.cpp
• GibbsSampler.h
• lowess.cpp
• lowess.h
• Makefile
• misc.cpp
• misc.h
• MyTimer.cpp
• MyTimer.h
• parameters1.txt
• parseAlignment.cpp
• parseAlignment.py
• PosteriorSamples.cpp
• PosteriorSamples.h
• ReadDistribution.cpp
• ReadDistribution.h
• README.md
• releaseDo.sh
• releaseList
• Sampler.cpp
• Sampler.h
• SimpleSparse.cpp
• SimpleSparse.h
• tagAlignment.h
• TagAlignments.cpp
• TagAlignments.h
• TranscriptExpression.cpp
• TranscriptExpression.h
• TranscriptInfo.cpp
• TranscriptInfo.h
• TranscriptSequence.cpp
• TranscriptSequence.h
• transposeFiles.cpp
• transposeFiles.h
• transposeLargeFile.cpp
• VariationalBayes.cpp
• VariationalBayes.h