#!/usr/bin/env python
"""
Copyright 2014, Daehwan Kim <infphilo@gmail.com>
This file is part of Centrifuge, which is copied and modified from bowtie2-inspect in the Bowtie2 package.
Centrifuge is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
Centrifuge is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with Centrifuge. If not, see <http://www.gnu.org/licenses/>.
"""
import os
import imp
import inspect
import logging
def main():
logging.basicConfig(level=logging.ERROR,
format='%(levelname)s: %(message)s'
)
inspect_bin_name = "centrifuge-inspect"
curr_script = os.path.realpath(inspect.getsourcefile(main))
ex_path = os.path.dirname(curr_script)
inspect_bin_spec = os.path.join(ex_path, "centrifuge-inspect-bin")
bld = imp.load_source('centrifuge-build', os.path.join(ex_path,'centrifuge-build'))
options,arguments = bld.build_args()
if '--verbose' in options:
logging.getLogger().setLevel(logging.INFO)
if '--debug' in options:
inspect_bin_spec += '-debug'
arguments[0] = inspect_bin_name
arguments.insert(1, 'basic-0')
arguments.insert(1, '--wrapper')
logging.info('Command: %s %s' % (inspect_bin_spec,' '.join(arguments[1:])))
os.execv(inspect_bin_spec, arguments)
if __name__ == "__main__":
main()