| 28 | 28 |
+CFLAGS += -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DM10_CONS -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64
|
| 29 | 29 |
# -I/usr/include/mysql -DMYSQL_DB
|
| 30 | 30 |
# -DSUPERFAMNUM -DSFCHAR="'|'"
|
| 31 | |
|
| 32 | |
--- a/make/Makefile36m.common
|
| 33 | |
+++ /dev/null
|
| 34 | |
@@ -1,51 +0,0 @@
|
| 35 | |
-#
|
| 36 | |
-# $Name: $ - $Id: Makefile36m.common 1250 2014-01-24 21:33:39Z wrp $
|
| 37 | |
-#
|
| 38 | |
-# commands common to all architectures
|
| 39 | |
-# if your architecture does not support "include", append at the end.
|
| 40 | |
-#
|
| 41 | |
-
|
| 42 | |
-COMP_LIBO=comp_mlib9.o # reads database into memory for multi-query without delay
|
| 43 | |
-COMP_THRO=comp_mthr9.o # threaded version
|
| 44 | |
-
|
| 45 | |
-WORK_THRO=work_thr2.o
|
| 46 | |
-GETSEQO =
|
| 47 | |
-
|
| 48 | |
-# standard nxgetaa, no memory mapping for 0 - 6
|
| 49 | |
-#LGETLIB=getseq.o lgetlib.o
|
| 50 | |
-#NGETLIB=nmgetlib
|
| 51 | |
-
|
| 52 | |
-# memory mapping for 0FASTA, 5PIRVMS, 6GCGBIN
|
| 53 | |
-LGETLIB= $(GETSEQO) lgetlib.o lgetaa_m.o
|
| 54 | |
-NGETLIB=nmgetlib
|
| 55 | |
-
|
| 56 | |
-# use ncbl_lib.c for BLAST1.4 support instead of ncbl2_mlib.c
|
| 57 | |
-#NCBL_LIB=ncbl_lib.o
|
| 58 | |
-
|
| 59 | |
-# this option should support both formats (BLAST1.4 not currently supported):
|
| 60 | |
-#NCBL_LIB=ncbl_lib.o ncbl2_mlib.o
|
| 61 | |
-
|
| 62 | |
-# normally use ncbl2_mlib.c
|
| 63 | |
-#NCBL_LIB=ncbl2_mlib.o
|
| 64 | |
-#LIB_M= -lm
|
| 65 | |
-
|
| 66 | |
-# this option supports NCBI BLAST2 and mySQL
|
| 67 | |
-# it requires "-I/usr/include/mysql -DMYSQL_DB" in CFLAGS
|
| 68 | |
-# and "-L/usr/lib64/mysql -lmysqlclient -lz" in LIB_M
|
| 69 | |
-# some systems may also require a LD_LIBRARY_PATH change
|
| 70 | |
-
|
| 71 | |
-LIB_M= -lm
|
| 72 | |
-#LIB_M= -L/usr/lib64/mysql -lmysqlclient -lm # -lz
|
| 73 | |
-NCBL_LIB=ncbl2_mlib.o
|
| 74 | |
-#NCBL_LIB=ncbl2_mlib.o mysql_lib.o
|
| 75 | |
-
|
| 76 | |
-# threaded as _t, serial
|
| 77 | |
-# include ../make/Makefile.pcom
|
| 78 | |
-
|
| 79 | |
-# threaded without _t
|
| 80 | |
-include ../make/Makefile.pcom_t
|
| 81 | |
-
|
| 82 | |
-# serial only
|
| 83 | |
-# include ../make/Makefile.pcom_s
|
| 84 | |
-
|
| 85 | |
-include ../make/Makefile.fcom
|