Fix wrapper script to properly call jar file (thanks to Olivier Sallou)
Andreas Tille
11 years ago
| 19 | 19 | |
| 20 | 20 | my @java_args; |
| 21 | 21 | my @files; |
| 22 | @@ -177,10 +177,10 @@ if (@files or $version or $help) { | |
| 23 | ||
| 24 | ||
| 25 | if ($java_bin ne 'java') { | |
| 26 | - system $java_bin,@java_args, "uk.ac.babraham.FastQC.FastQCApplication", @files; | |
| 27 | + system $java_bin,@java_args,"-jar","/usr/share/fastqc/fastqc.jar", @files; | |
| 28 | } | |
| 29 | else { | |
| 30 | - exec $java_bin,@java_args, "uk.ac.babraham.FastQC.FastQCApplication", @files; | |
| 31 | + exec $java_bin,@java_args,"-jar","/usr/share/fastqc/fastqc.jar", @files; | |
| 32 | } | |
| 33 | ||
| 34 | __DATA__ | |
| 35 | @@ -273,4 +273,4 @@ BUGS | |
| 36 | Any bugs in fastqc should be reported either to simon.andrews@babraham.ac.uk | |
| 37 | or in www.bioinformatics.babraham.ac.uk/bugzilla/ | |
| 38 | ||
| 39 | - | |
| 40 | \ No newline at end of file | |
| 41 | + |