Core dump in test suite in Salsa CI
Andreas Tille
1 year, 1 month ago
| 1 | 1 | |
| 2 | 2 | * Bump versioned Build-Depends: libvcflib-dev (>= 1.0.9+dfsg-1~) |
| 3 | 3 | * Do not build on i386 on Salsa CI |
| 4 | TODO: https://salsa.debian.org/med-team/freebayes/-/jobs/4088476 | |
| 5 | stderr: | |
| 6 | [E::idx_find_and_load] Could not retrieve index file for '-' | |
| 7 | Random access with SetRegion not available for STDIN reading (no index file) | |
| 8 | ERROR(freebayes): Could not SetRegion to q:1..10000 | |
| 9 | t/01_call_variants.t: line 107: 4400 Aborted | |
| 10 | (core dumped) freebayes -f tiny/q.fa.gz -@ tiny/q_spiked.vcf.gz -r q:1-10000 -l - < tiny/NA12878.chr22.tiny.bam > /dev/null 2> /dev/null | |
| 4 | 11 | |
| 5 | 12 | -- Andreas Tille <tille@debian.org> Mon, 27 Mar 2023 09:54:08 +0200 |
| 6 | 13 |