Commit 1ef37dd2a80ee2e79a834362f0e098e469135639 - gdata

Import Debian changes 2.8.2-1 gdata (2.8.2-1) unstable; urgency=low * New upstream release * debian/control: Set (Build-)Depends: to current R version * debian/control: Package changed to Architecture: all Dirk Eddelbuettel 5 years ago

20 changed file(s) with 9334 addition(s) and 2204 deletion(s). Raw diff Collapse all Expand all

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ChangeLog less more

	0	2011-04-15 20:25 warnes
	1
	2	* [r1468]
	3	R/dQuote.ascii.R,
	4	R/installXLSXsupport.R,
	5	R/read.xls.R,
	6	R/sheetCount.R,
	7	R/xls2sep.R:
	8	Fix
	9	errors
	10	on
	11	windows
	12	when
	13	R
	14	or
	15	Perl
	16	install
	17	path
	18	includes
	19	spaces
	20	by
	21	properly
	22	quoting
	23	the
	24	path.
	25
	26	2011-04-15 19:43 warnes
	27
	28	* [r1467]
	29	R/xlsFormats.R:
	30	Fix
	31	error
	32	in
	33	xlsFormat()
	34	on
	35	windows
	36	when
	37	R
	38	or
	39	Perl
	40	install
	41	path
	42	includes
	43	spaces
	44	by
	45	quoting
	46	the
	47	path.
	48
	49	2011-01-15 21:58 ggorjan
	50
	51	* [r1465]
	52	NAMESPACE,
	53	R/nPairs.R,
	54	inst/NEWS,
	55	inst/unitTests/runit.nPairs.R,
	56	man/nPairs.Rd:
	57	Adding
	58	summary
	59	method
	60	for
	61	nPairs
	62
0	63	2010-11-12 19:14 warnes
1	64
2		* [r1462] inst/NEWS: Update NEWS for gdata 2.8.1
	65	* [r1462]
	66	inst/NEWS:
	67	Update
	68	NEWS
	69	for
	70	gdata
	71	2.8.1
3	72
4	73	2010-11-12 19:09 warnes
5	74
6		* [r1461] DESCRIPTION: Update DEScription file for 2.8.1 release
	75	* [r1461]
	76	DESCRIPTION:
	77	Update
	78	DEScription
	79	file
	80	for
	81	2.8.1
	82	release
7	83
8	84	2010-11-12 19:08 warnes
9	85
10		* [r1460] tests/test.read.xls.Rout.save,
11		tests/tests.write.fwf.Rout.save: Update test output to match
12		latest code
	86	* [r1460]
	87	tests/test.read.xls.Rout.save,
	88	tests/tests.write.fwf.Rout.save:
	89	Update
	90	test
	91	output
	92	to
	93	match
	94	latest
	95	code
13	96
14	97	2010-11-12 19:08 warnes
15	98
16		* [r1459] R/write.fwf.R, man/write.fwf.Rd,
17		tests/test.write.fwf.eol.R: Modify write.fwf() to capture and
18		pass on additional arguments for
19		write.table(). This resolves a bug reported by Jan Wijffels.
	99	* [r1459]
	100	R/write.fwf.R,
	101	man/write.fwf.Rd,
	102	tests/test.write.fwf.eol.R:
	103	Modify
	104	write.fwf()
	105	to
	106	capture
	107	and
	108	pass
	109	on
	110	additional
	111	arguments
	112	for write.table().
	113
	114	This
	115	resolves
	116	a
	117	bug
	118	reported
	119	by
	120	Jan
	121	Wijffels.
20	122
21	123	2010-11-01 00:30 arnima
22	124
23		* [r1453] man/Args.Rd: Minor improvement in Args.Rd help page
	125	* [r1453]
	126	man/Args.Rd:
	127	Minor
	128	improvement
	129	in
	130	Args.Rd
	131	help
	132	page
24	133
25	134	2010-10-19 22:04 warnes
26	135
27		* [r1452] R/onAttach.R, R/xls2sep.R: Avoid use of file.access()
28		which is unreliable on Windows network shares.
	136	* [r1452]
	137	R/onAttach.R,
	138	R/xls2sep.R:
	139	Avoid
	140	use
	141	of
	142	file.access()
	143	which
	144	is
	145	unreliable
	146	on
	147	Windows
	148	network
	149	shares.
29	150
30	151	2010-07-08 12:36 ggrothendieck2
31	152
32		* [r1448] R/xls2sep.R: findPerl call added to xls2sep
	153	* [r1448]
	154	R/xls2sep.R:
	155	findPerl
	156	call
	157	added
	158	to
	159	xls2sep
33	160
34	161	2010-07-07 22:48 ggrothendieck2
35	162
36		* [r1447] man/read.xls.Rd: small improvements to read.xls.Rd
	163	* [r1447]
	164	man/read.xls.Rd:
	165	small
	166	improvements
	167	to
	168	read.xls.Rd
37	169
38	170	2010-05-03 16:26 warnes
39	171
40		* [r1439] NAMESPACE, R/installXLSXModules.R,
41		R/installXLSXsupport.R, R/onAttach.R, inst/NEWS,
42		man/installXLSXsupport.Rd, man/xlsFormats.Rd: Rename
43		installXLSXModules() to installXLSXsupport() and provide
44		documentation for it.
	172	* [r1439]
	173	NAMESPACE,
	174	R/installXLSXModules.R,
	175	R/installXLSXsupport.R,
	176	R/onAttach.R,
	177	inst/NEWS,
	178	man/installXLSXsupport.Rd,
	179	man/xlsFormats.Rd:
	180	Rename
	181	installXLSXModules()
	182	to
	183	installXLSXsupport()
	184	and
	185	provide
	186	documentation
	187	for
	188	it.
45	189
46	190	2010-05-03 13:48 warnes
47	191
48		* [r1438] inst/NEWS: Update news for gdata 2.8.0
	192	* [r1438]
	193	inst/NEWS:
	194	Update
	195	news
	196	for
	197	gdata
	198	2.8.0
49	199
50	200	2010-05-03 13:35 warnes
51	201
52		* [r1437] DESCRIPTION, NAMESPACE, R/installXLSXModules.R,
53		R/onAttach.R, inst/perl/install_modules.pl,
54		inst/perl/module_tools.pl, tests/test.read.xls.R: Add .onAttach
55		function to check & inform user if perl is available, to check
56		whether XLS and XLSX formats are avaiable, and to run the (new)
57		installXLSXModules() functon to attempt to install the necessar
58		libraries if not. Added installXLSXModules() function.
	202	* [r1437]
	203	DESCRIPTION,
	204	NAMESPACE,
	205	R/installXLSXModules.R,
	206	R/onAttach.R,
	207	inst/perl/install_modules.pl,
	208	inst/perl/module_tools.pl,
	209	tests/test.read.xls.R:
	210	Add
	211	.onAttach
	212	function
	213	to
	214	check
	215	&
	216	inform
	217	user
	218	if
	219	perl
	220	is
	221	available,
	222	to
	223	check
	224	whether
	225	XLS
	226	and
	227	XLSX
	228	formats
	229	are
	230	avaiable,
	231	and
	232	to
	233	run
	234	the
	235	(new)
	236	installXLSXModules()
	237	functon
	238	to
	239	attempt
	240	to
	241	install
	242	the
	243	necessar
	244	libraries
	245	if
	246	not.
	247
	248	Added
	249
	250	installXLSXModules()
	251	function.
59	252
60	253	2010-05-02 13:56 warnes
61	254
62		* [r1436] man/xlsFormats.Rd: Correct error in xlsFormat example
	255	* [r1436]
	256	man/xlsFormats.Rd:
	257	Correct
	258	error
	259	in
	260	xlsFormat
	261	example
63	262
64	263	2010-05-02 06:11 warnes
65	264
66		* [r1435] DESCRIPTION, NAMESPACE, R/dQuote.ascii.R, R/findPerl.R,
67		R/read.xls.R, R/xlsFormats.R, inst/doc/gregmisc.tex,
68		inst/perl/install_modules.pl, inst/perl/module_tools.pl,
69		inst/perl/sheetCount.pl, inst/perl/supportedFormats.pl,
70		inst/perl/xls2csv.pl, man/ConvertMedUnits.Rd,
71		man/aggregate.table.Rd, man/combine.Rd, man/interleave.Rd,
72		man/matchcols.Rd, man/nobs.Rd, man/read.xls.Rd,
73		man/rename.vars.Rd, man/reorder.Rd, man/resample.Rd,
74		man/sheetCount.Rd, man/trim.Rd, man/unmatrix.Rd,
75		man/upperTriangle.Rd, man/xlsFormats.Rd, src,
76		tests/test.read.xls.R, tests/test.read.xls.Rout.save,
77		tests/tests.write.fwf.Rout.save: Update perl code to work (but
78		generate warnings) when Zlib or SpreadSheet::XLXS is not
79		instaled. Also update Greg's email address
	265	* [r1435]
	266	DESCRIPTION,
	267	NAMESPACE,
	268	R/dQuote.ascii.R,
	269	R/findPerl.R,
	270	R/read.xls.R,
	271	R/xlsFormats.R,
	272	inst/doc/gregmisc.tex,
	273	inst/perl/install_modules.pl,
	274	inst/perl/module_tools.pl,
	275	inst/perl/sheetCount.pl,
	276	inst/perl/supportedFormats.pl,
	277	inst/perl/xls2csv.pl,
	278	man/ConvertMedUnits.Rd,
	279	man/aggregate.table.Rd,
	280	man/combine.Rd,
	281	man/interleave.Rd,
	282	man/matchcols.Rd,
	283	man/nobs.Rd,
	284	man/read.xls.Rd,
	285	man/rename.vars.Rd,
	286	man/reorder.Rd,
	287	man/resample.Rd,
	288	man/sheetCount.Rd,
	289	man/trim.Rd,
	290	man/unmatrix.Rd,
	291	man/upperTriangle.Rd,
	292	man/xlsFormats.Rd,
	293	src,
	294	tests/test.read.xls.R,
	295	tests/test.read.xls.Rout.save,
	296	tests/tests.write.fwf.Rout.save:
	297	Update
	298	perl
	299	code
	300	to
	301	work
	302	(but
	303	generate
	304	warnings)
	305	when
	306	Zlib
	307	or
	308	SpreadSheet::XLXS
	309	is
	310	not
	311	instaled.
	312
	313	Also
	314	update
	315	Greg's
	316	email
	317	address
80	318
81	319	2010-02-21 17:12 ggrothendieck2
82	320
83		* [r1423] R/read.xls.R, man/read.xls.Rd: isOpen problems fixed
84		(isOpen must have changed in R since this worked in earlier
85		versions). Also nba.xls link in read.xls.Rd disappeared. Replaced
86		with similar link.
	321	* [r1423]
	322	R/read.xls.R,
	323	man/read.xls.Rd:
	324	isOpen
	325	problems
	326	fixed
	327	(isOpen
	328	must
	329	have
	330	changed
	331	in
	332	R
	333	since
	334	this
	335	worked
	336	in
	337	earlier
	338	versions).
	339
	340	Also
	341	nba.xls
	342	link
	343	in
	344	read.xls.Rd
	345	disappeared.
	346	Replaced
	347	with
	348	similar
	349	link.
87	350
88	351	2010-02-20 11:32 ggrothendieck2
89	352
90		* [r1422] INSTALL: improved INSTALL file
	353	* [r1422]
	354	INSTALL:
	355	improved
	356	INSTALL
	357	file
91	358
92	359	2010-02-19 15:36 ggrothendieck2
93	360
94		* [r1421] INSTALL, R/dQuote.ascii.R, R/read.xls.R, R/sheetCount.R,
95		inst/NEWS: added findPerl to locate ActiveState Perl on Windows
96		if perl= not specified and Rtools perl would have otherwise been
97		used. Also added INSTALL file.
	361	* [r1421]
	362	INSTALL,
	363	R/dQuote.ascii.R,
	364	R/read.xls.R,
	365	R/sheetCount.R,
	366	inst/NEWS:
	367	added
	368	findPerl
	369	to
	370	locate
	371	ActiveState
	372	Perl
	373	on
	374	Windows
	375	if
	376	perl=
	377	not
	378	specified
	379	and
	380	Rtools
	381	perl
	382	would
	383	have
	384	otherwise
	385	been
	386	used.
	387
	388	Also
	389	added
	390	INSTALL
	391	file.
98	392
99	393	2010-01-28 19:58 warnes
100	394
101		* [r1419] DESCRIPTION, inst/NEWS: Update for release 2.7.1
	395	* [r1419]
	396	DESCRIPTION,
	397	inst/NEWS:
	398	Update
	399	for
	400	release
	401	2.7.1
102	402
103	403	2010-01-28 19:56 warnes
104	404
105		* [r1418] R/xls2sep.R: xls2sep(): Show output of perl call when
	405	* [r1418]
	406	R/xls2sep.R:
	407	xls2sep():
	408	Show
	409	output
	410	of
	411	perl
	412	call
	413	when
106	414	verbose=T
107	415
108	416	2010-01-28 16:43 warnes
109	417
110		* [r1417] src/build.bat: More Win32 fixes
	418	* [r1417]
	419	src/build.bat:
	420	More
	421	Win32
	422	fixes
111	423
112	424	2010-01-28 16:00 warnes
113	425
114		* [r1416] src/Makefile, src/Makefile.win, src/build.bat: More work
115		on Win32 building
	426	* [r1416]
	427	src/Makefile,
	428	src/Makefile.win,
	429	src/build.bat:
	430	More
	431	work
	432	on
	433	Win32
	434	building
116	435
117	436	2010-01-28 03:58 warnes
118	437
119		* [r1415] src/Makefile, src/Makefile.win, src/build.bat: Support
120		building Compress::Raw::Zlib perl package under windows.
	438	* [r1415]
	439	src/Makefile,
	440	src/Makefile.win,
	441	src/build.bat:
	442	Support
	443	building
	444	Compress::Raw::Zlib
	445	perl
	446	package
	447	under
	448	windows.
121	449
122	450	2010-01-26 04:12 warnes
123	451
124		* [r1413] inst/NEWS: Fix typos
	452	* [r1413]
	453	inst/NEWS:
	454	Fix
	455	typos
125	456
126	457	2010-01-26 04:11 warnes
127	458
128		* [r1412] R/sheetCount.R: Show more details in sheetCount() when
	459	* [r1412]
	460	R/sheetCount.R:
	461	Show
	462	more
	463	details
	464	in
	465	sheetCount()
	466	when
129	467	verbose=TRUE
130	468
131	469	2010-01-24 23:30 warnes
132	470
133		* [r1411] R/xls2sep.R: Replace two calls to 'dQuote', to
	471	* [r1411]
	472	R/xls2sep.R:
	473	Replace
	474	two
	475	calls
	476	to
	477	'dQuote',
	478	to
134	479	'dQuote.ascii'
135	480
136	481	2010-01-24 19:25 warnes
137	482
138		* [r1408] inst/doc/mapLevels.pdf, inst/doc/unknown.pdf: Remove
139		auto-generated pdf files from svn
	483	* [r1408]
	484	inst/doc/mapLevels.pdf,
	485	inst/doc/unknown.pdf:
	486	Remove
	487	auto-generated
	488	pdf
	489	files
	490	from
	491	svn
140	492
141	493	2010-01-24 19:18 warnes
142	494
143		* [r1407] src/Makefile: create 'distclean' to remove perl binary
144		dir, currently mac-only
	495	* [r1407]
	496	src/Makefile:
	497	create
	498	'distclean'
	499	to
	500	remove
	501	perl
	502	binary
	503	dir,
	504	currently
	505	mac-only
145	506
146	507	2010-01-24 19:13 warnes
147	508
148		* [r1406] R/read.xls.R, R/xls2sep.R: Make read.xls() and xls2sep()
149		quieter when verbose=FALSE
	509	* [r1406]
	510	R/read.xls.R,
	511	R/xls2sep.R:
	512	Make
	513	read.xls()
	514	and
	515	xls2sep()
	516	quieter
	517	when
	518	verbose=FALSE
150	519
151	520	2010-01-24 19:12 warnes
152	521
153		* [r1405] tests/test.read.xls.R, tests/test.read.xls.Rout.save: Add
154		tests for read.xls, sheetCount, and sheetNames
	522	* [r1405]
	523	tests/test.read.xls.R,
	524	tests/test.read.xls.Rout.save:
	525	Add
	526	tests
	527	for
	528	read.xls,
	529	sheetCount,
	530	and
	531	sheetNames
155	532
156	533	2010-01-24 18:22 warnes
157	534
158		* [r1404] src/Makefile: Modify makefile to 1) clean up after build,
159		2) make tar non-verbose
	535	* [r1404]
	536	src/Makefile:
	537	Modify
	538	makefile
	539	to
	540	1)
	541	clean
	542	up
	543	after
	544	build,
	545	2)
	546	make
	547	tar
	548	non-verbose
160	549
161	550	2010-01-24 18:19 warnes
162	551
163		* [r1403] R/read.xls.R, R/sheetCount.R: Close connections when
	552	* [r1403]
	553	R/read.xls.R,
	554	R/sheetCount.R:
	555	Close
	556	connections
	557	when
164	558	done.
165	559
166	560	2010-01-24 18:17 warnes
167	561
168		* [r1402] man/read.xls.Rd: Fix typo
	562	* [r1402]
	563	man/read.xls.Rd:
	564	Fix
	565	typo
169	566
170	567	2010-01-24 18:10 warnes
171	568
172		* [r1401] man/read.xls.Rd, man/sheetNames.Rd: Fix R CMD CHECK
	569	* [r1401]
	570	man/read.xls.Rd,
	571	man/sheetNames.Rd:
	572	Fix
	573	R
	574	CMD
	575	CHECK
173	576	errors
174	577
175	578	2010-01-24 08:47 warnes
176	579
177		* [r1400] src/Compress-Raw-Zlib-2.024,
178		src/Compress-Raw-Zlib-2.024.tar.gz, src/Makefile: Use the
179		original gz file for Compress::Raw::Zlib to avoid issues with
180		'non-platform-independent' filename error in R CMD CHECK
	580	* [r1400]
	581	src/Compress-Raw-Zlib-2.024,
	582	src/Compress-Raw-Zlib-2.024.tar.gz,
	583	src/Makefile:
	584	Use
	585	the
	586	original
	587	gz
	588	file
	589	for
	590	Compress::Raw::Zlib
	591	to
	592	avoid
	593	issues
	594	with
	595	'non-platform-independent'
	596	filename
	597	error
	598	in
	599	R
	600	CMD
	601	CHECK
181	602
182	603	2010-01-24 08:38 warnes
183	604
184		* [r1399] inst/perl/Archive/README-Archive-Zip,
185		inst/perl/Archive/README-Archive::Zip: Rename files to remove R
186		CMD check error
	605	* [r1399]
	606	inst/perl/Archive/README-Archive-Zip,
	607	inst/perl/Archive/README-Archive::Zip:
	608	Rename
	609	files
	610	to
	611	remove
	612	R
	613	CMD
	614	check
	615	error
187	616
188	617	2010-01-24 08:33 warnes
189	618
190		* [r1398] DESCRIPTION, inst/NEWS, inst/doc/mapLevels.pdf,
191		inst/doc/unknown.pdf: Update for 2.7.0 release
	619	* [r1398]
	620	DESCRIPTION,
	621	inst/NEWS,
	622	inst/doc/mapLevels.pdf,
	623	inst/doc/unknown.pdf:
	624	Update
	625	for
	626	2.7.0
	627	release
192	628
193	629	2010-01-24 08:21 warnes
194	630
195		* [r1397] NAMESPACE: Add new functions to NAMESPACE
	631	* [r1397]
	632	NAMESPACE:
	633	Add
	634	new
	635	functions
	636	to
	637	NAMESPACE
196	638
197	639	2010-01-24 08:19 warnes
198	640
199		* [r1396] src, src/Compress-Raw-Zlib-2.024,
	641	* [r1396]
	642	src,
	643	src/Compress-Raw-Zlib-2.024,
200	644	src/Compress-Raw-Zlib-2.024/Changes,
201	645	src/Compress-Raw-Zlib-2.024/MANIFEST,
202	646	src/Compress-Raw-Zlib-2.024/META.yml,

255	699	src/Compress-Raw-Zlib-2.024/zlib-src/zconf.h,
256	700	src/Compress-Raw-Zlib-2.024/zlib-src/zlib.h,
257	701	src/Compress-Raw-Zlib-2.024/zlib-src/zutil.c,
258		src/Compress-Raw-Zlib-2.024/zlib-src/zutil.h, src/Makefile: Add
259		Compress::Raw::Zlib code
	702	src/Compress-Raw-Zlib-2.024/zlib-src/zutil.h,
	703	src/Makefile:
	704	Add
	705	Compress::Raw::Zlib
	706	code
260	707
261	708	2010-01-24 08:15 warnes
262	709
263		* [r1395] man/read.xls.Rd, man/sheetCount.Rd: Add/Update
	710	* [r1395]
	711	man/read.xls.Rd,
	712	man/sheetCount.Rd:
	713	Add/Update
264	714	documentation
265	715
266	716	2010-01-24 08:06 warnes
267	717
268		* [r1394] R/xls2sep.R: Minor formatting change
	718	* [r1394]
	719	R/xls2sep.R:
	720	Minor
	721	formatting
	722	change
269	723
270	724	2010-01-24 07:54 warnes
271	725
272		* [r1393] inst/xls/ExampleExcelFile.xls,
273		inst/xls/ExampleExcelFile.xlsx: Add additional example files
	726	* [r1393]
	727	inst/xls/ExampleExcelFile.xls,
	728	inst/xls/ExampleExcelFile.xlsx:
	729	Add
	730	additional
	731	example
	732	files
274	733
275	734	2010-01-24 07:49 warnes
276	735
277		* [r1392] inst/perl/sheetCount.pl, inst/perl/sheetNames.pl,
278		inst/perl/xls2csv.pl: Combine sheetCount.pl and sheetNames.pl and
279		modify to support Excel 2007 'xlsx' format
	736	* [r1392]
	737	inst/perl/sheetCount.pl,
	738	inst/perl/sheetNames.pl,
	739	inst/perl/xls2csv.pl:
	740	Combine
	741	sheetCount.pl
	742	and
	743	sheetNames.pl
	744	and
	745	modify
	746	to
	747	support
	748	Excel
	749	2007
	750	'xlsx'
	751	format
280	752
281	753	2010-01-24 07:26 warnes
282	754
283		* [r1391] inst/perl/Spreadsheet/XLSX.pm,
284		inst/perl/Spreadsheet/XLSX/Fmt2007.pm, inst/perl/xls2csv.pl:
285		Complete changes to handle Excel 2007 'xlsx' files
	755	* [r1391]
	756	inst/perl/Spreadsheet/XLSX.pm,
	757	inst/perl/Spreadsheet/XLSX/Fmt2007.pm,
	758	inst/perl/xls2csv.pl:
	759	Complete
	760	changes
	761	to
	762	handle
	763	Excel
	764	2007
	765	'xlsx'
	766	files
286	767
287	768	2010-01-24 05:36 warnes
288	769
289		* [r1390] inst/perl/Archive, inst/perl/Archive/README-Archive::Zip,
290		inst/perl/Archive/Zip, inst/perl/Archive/Zip.pm,
	770	* [r1390]
	771	inst/perl/Archive,
	772	inst/perl/Archive/README-Archive::Zip,
	773	inst/perl/Archive/Zip,
	774	inst/perl/Archive/Zip.pm,
291	775	inst/perl/Archive/Zip/Archive.pm,
292	776	inst/perl/Archive/Zip/BufferedFileHandle.pm,
293	777	inst/perl/Archive/Zip/DirectoryMember.pm,

302	786	inst/perl/Archive/Zip/ZipFileMember.pm,
303	787	inst/perl/OLE/README-OLE-Storage_Lite,
304	788	inst/perl/Spreadsheet/README-ParseExcel,
305		inst/perl/Spreadsheet/README-XLS, inst/perl/Spreadsheet/XLSX,
	789	inst/perl/Spreadsheet/README-XLS,
	790	inst/perl/Spreadsheet/XLSX,
306	791	inst/perl/Spreadsheet/XLSX.pm,
307	792	inst/perl/Spreadsheet/XLSX/Fmt2007.pm,
308		inst/perl/Spreadsheet/XLSX/Utility2007.pm, inst/perl/VERSIONS:
309		Add additional Perl modules to support Excel 2007 'xlsx' files
	793	inst/perl/Spreadsheet/XLSX/Utility2007.pm,
	794	inst/perl/VERSIONS:
	795	Add
	796	additional
	797	Perl
	798	modules
	799	to
	800	support
	801	Excel
	802	2007
	803	'xlsx'
	804	files
310	805
311	806	2010-01-24 02:28 ggrothendieck2
312	807
313		* [r1389] NAMESPACE, man/sheetNames.Rd: added sheetNames.Rd
314		(documenting sheetNames/sheetCount) and updated NAMESPACE file.
	808	* [r1389]
	809	NAMESPACE,
	810	man/sheetNames.Rd:
	811	added
	812	sheetNames.Rd
	813	(documenting
	814	sheetNames/sheetCount)
	815	and
	816	updated
	817	NAMESPACE
	818	file.
315	819
316	820	2010-01-24 02:05 ggrothendieck2
317	821
318		* [r1388] inst/NEWS: fixed spacing problem in NEWS
	822	* [r1388]
	823	inst/NEWS:
	824	fixed
	825	spacing
	826	problem
	827	in
	828	NEWS
319	829
320	830	2010-01-23 07:11 warnes
321	831
322		* [r1387] inst/perl/xls2csv.pl: Check if parsing the xls file
323		succeeds... Current code doesn't handle new XML-based format
	832	* [r1387]
	833	inst/perl/xls2csv.pl:
	834	Check
	835	if
	836	parsing
	837	the
	838	xls
	839	file
	840	succeeds...
	841
	842	Current
	843	code
	844	doesn't
	845	handle
	846	new
	847	XML-based
	848	format
324	849
325	850	2010-01-23 07:09 warnes
326	851
327		* [r1386] inst/perl/Spreadsheet/XLSX: Remove perl
328		'Spreadsheet:XLSX' module since it depends on Compress-Raw-Zlib,
329		which probably won't be available on most machines, and I don't
330		have time to figure out how to get R to build it properly when
331		gdata is installed.
	852	* [r1386]
	853	inst/perl/Spreadsheet/XLSX:
	854	Remove
	855
	856	perl
	857	'Spreadsheet:XLSX'
	858	module
	859	since
	860	it
	861	depends
	862	on
	863	Compress-Raw-Zlib,
	864	which
	865	probably
	866	won't
	867	be
	868	available
	869	on
	870	most
	871	machines,
	872	and
	873	I
	874	don't
	875	have
	876	time
	877	to
	878	figure
	879	out
	880	how
	881	to
	882	get
	883	R
	884	to
	885	build
	886	it
	887	properly
	888	when
	889	gdata
	890	is
	891	installed.
332	892
333	893	2010-01-23 06:49 warnes
334	894
335		* [r1385] inst/perl/Spreadsheet/XLSX,
	895	* [r1385]
	896	inst/perl/Spreadsheet/XLSX,
336	897	inst/perl/Spreadsheet/XLSX/Fmt2007.pm,
337		inst/perl/Spreadsheet/XLSX/Utility2007.pm: Add perl
338		'Spreadsheet:XLSX' module to support new Excel XML format files
	898	inst/perl/Spreadsheet/XLSX/Utility2007.pm:
	899	Add
	900	perl
	901	'Spreadsheet:XLSX'
	902	module
	903	to
	904	support
	905	new
	906	Excel
	907	XML
	908	format
	909	files
339	910
340	911	2010-01-23 05:51 warnes
341	912
342		* [r1384] R/xls2sep.R: Add xls2tsv() convenience wrapper to
	913	* [r1384]
	914	R/xls2sep.R:
	915	Add
	916	xls2tsv()
	917	convenience
	918	wrapper
	919	to
343	920	xls2sep()
344	921
345	922	2010-01-23 05:50 warnes
346	923
347		* [r1383] R/read.xls.R, R/xls2sep.R: Update to match new xls2csv.pl
348		code, allow specification of sheets by name, support CSV and TAB
349		delimited files using the same code, other minor changes.
	924	* [r1383]
	925	R/read.xls.R,
	926	R/xls2sep.R:
	927	Update
	928	to
	929	match
	930	new
	931	xls2csv.pl
	932	code,
	933	allow
	934	specification
	935	of
	936	sheets
	937	by
	938	name,
	939	support
	940	CSV
	941	and
	942	TAB
	943	delimited
	944	files
	945	using
	946	the
	947	same
	948	code,
	949	other
	950	minor
	951	changes.
350	952
351	953	2010-01-23 05:45 warnes
352	954
353		* [r1382] R/sheetCount.R: Add sheetNames() function to extract the
354		names from XLS files
	955	* [r1382]
	956	R/sheetCount.R:
	957	Add
	958	sheetNames()
	959	function
	960	to
	961	extract
	962	the
	963	names
	964	from
	965	XLS
	966	files
355	967
356	968	2010-01-23 05:23 warnes
357	969
358		* [r1381] inst/bin/xls2csv.bat: Fix xls2csv.bat
	970	* [r1381]
	971	inst/bin/xls2csv.bat:
	972	Fix
	973	xls2csv.bat
359	974
360	975	2010-01-23 05:17 warnes
361	976
362		* [r1380] inst/perl/xls2csv.pl: If only one sheet is present in the
363		file, don't insert the sheet name into the filename
	977	* [r1380]
	978	inst/perl/xls2csv.pl:
	979	If
	980	only
	981	one
	982	sheet
	983	is
	984	present
	985	in
	986	the
	987	file,
	988	don't
	989	insert
	990	the
	991	sheet
	992	name
	993	into
	994	the
	995	filename
364	996
365	997	2010-01-23 04:38 warnes
366	998
367		* [r1379] inst/xls/ExampleExcelFile.xls,
368		inst/xls/ExampleExcelFile.xlsx: Add additional test/example Excel
	999	* [r1379]
	1000	inst/xls/ExampleExcelFile.xls,
	1001	inst/xls/ExampleExcelFile.xlsx:
	1002	Add
	1003	additional
	1004	test/example
	1005	Excel
369	1006	files
370	1007
371	1008	2010-01-23 04:34 warnes
372	1009
373		* [r1378] inst/perl/xls2csv.pl, inst/perl/xls2tab.pl,
374		inst/perl/xls2tsv.pl: Modify xls2csv.pl script to:
375		- Use tab-delimiter and .tsv or .tab extension if called with the
	1010	* [r1378]
	1011	inst/perl/xls2csv.pl,
	1012	inst/perl/xls2tab.pl,
	1013	inst/perl/xls2tsv.pl:
	1014	Modify
	1015	xls2csv.pl
	1016	script
	1017	to: -
	1018	Use
	1019	tab-delimiter
	1020	and
	1021	.tsv
	1022	or
	1023	.tab
	1024	extension
	1025	if
	1026	called
	1027	with
	1028	the
376	1029	name
377		xls2tsv.pl or xls2tab.pl, respectively. This allows a single
	1030
	1031	xls2tsv.pl
	1032	or
	1033	xls2tab.pl,
	1034	respectively.
	1035
	1036	This
	1037	allows
	1038	a
	1039	single
378	1040	source
379		file and two symlinks to be used intstead of maintaining several
380		almost-identical files.
381		- Allow selection of sheets by name
382		- Provide better error checking
383		- Other code improvements
	1041
	1042	file
	1043	and
	1044	two
	1045	symlinks
	1046	to
	1047	be
	1048	used
	1049	intstead
	1050	of
	1051	maintaining
	1052	several
	1053
	1054	almost-identical
	1055	files. -
	1056	Allow
	1057	selection
	1058	of
	1059	sheets
	1060	by
	1061	name -
	1062	Provide
	1063	better
	1064	error
	1065	checking -
	1066	Other
	1067	code
	1068	improvements
384	1069
385	1070	2010-01-23 02:30 warnes
386	1071
387		* [r1377] inst/perl/sheetCount.pl, inst/perl/sheetNames.pl: Add
388		perl scripts to extract worksheet names and sheet count from
389		Excel files
	1072	* [r1377]
	1073	inst/perl/sheetCount.pl,
	1074	inst/perl/sheetNames.pl:
	1075	Add
	1076	perl
	1077	scripts
	1078	to
	1079	extract
	1080	worksheet
	1081	names
	1082	and
	1083	sheet
	1084	count
	1085	from
	1086	Excel
	1087	files
390	1088
391	1089	2010-01-22 19:35 warnes
392	1090
393		* [r1376] inst/perl/OLE/Storage_Lite.pm: Upgrade Perl
394		OLE::StorageLight module to version 0.19
	1091	* [r1376]
	1092	inst/perl/OLE/Storage_Lite.pm:
	1093	Upgrade
	1094	Perl
	1095	OLE::StorageLight
	1096	module
	1097	to
	1098	version
	1099	0.19
395	1100
396	1101	2010-01-22 19:31 warnes
397	1102
398		* [r1375] inst/perl/Spreadsheet/ParseExcel.pm,
	1103	* [r1375]
	1104	inst/perl/Spreadsheet/ParseExcel.pm,
399	1105	inst/perl/Spreadsheet/ParseExcel/Cell.pm,
400	1106	inst/perl/Spreadsheet/ParseExcel/Dump.pm,
401	1107	inst/perl/Spreadsheet/ParseExcel/FmtDefault.pm,

410	1116	inst/perl/Spreadsheet/ParseExcel/SaveParser/Worksheet.pm,
411	1117	inst/perl/Spreadsheet/ParseExcel/Utility.pm,
412	1118	inst/perl/Spreadsheet/ParseExcel/Workbook.pm,
413		inst/perl/Spreadsheet/ParseExcel/Worksheet.pm: Upgrade perl
414		Spreadsheet::ParseExcel to version 0.56
	1119	inst/perl/Spreadsheet/ParseExcel/Worksheet.pm:
	1120	Upgrade
	1121	perl
	1122	Spreadsheet::ParseExcel
	1123	to
	1124	version
	1125	0.56
415	1126
416	1127	2010-01-22 19:20 warnes
417	1128
418		* [r1374] DESCRIPTION: Add complete list of contributors
	1129	* [r1374]
	1130	DESCRIPTION:
	1131	Add
	1132	complete
	1133	list
	1134	of
	1135	contributors
419	1136
420	1137	2010-01-22 14:00 arnima
421	1138
422		* [r1373] man/keep.Rd: Minor improvement in help page
	1139	* [r1373]
	1140	man/keep.Rd:
	1141	Minor
	1142	improvement
	1143	in
	1144	help
	1145	page
423	1146
424	1147	2010-01-22 13:06 arnima
425	1148
426		* [r1371] R/Args.R, R/env.R, R/is.what.R, R/keep.R, R/ll.R,
427		man/Args.Rd, man/env.Rd, man/is.what.Rd, man/keep.Rd, man/ll.Rd:
428		Many small improvements to documentation of Arni's five functions
	1149	* [r1371]
	1150	R/Args.R,
	1151	R/env.R,
	1152	R/is.what.R,
	1153	R/keep.R,
	1154	R/ll.R,
	1155	man/Args.Rd,
	1156	man/env.Rd,
	1157	man/is.what.Rd,
	1158	man/keep.Rd,
	1159	man/ll.Rd:
	1160	Many
	1161	small
	1162	improvements
	1163	to
	1164	documentation
	1165	of
	1166	Arni's
	1167	five
	1168	functions
429	1169
430	1170	2010-01-22 12:45 warnes
431	1171
432		* [r1370] R/dQuote.ascii.R, R/read.xls.R, R/sheetCount.R,
433		R/xls2sep.R: - Move xls2csv(), xls2tab(), xls2sep() to a separate
	1172	* [r1370]
	1173	R/dQuote.ascii.R,
	1174	R/read.xls.R,
	1175	R/sheetCount.R,
	1176	R/xls2sep.R:
	1177	-
	1178	Move
	1179	xls2csv(),
	1180	xls2tab(),
	1181	xls2sep()
	1182	to
	1183	a
	1184	separate
	1185	file -
	1186	Move
	1187	qQuote.ascii
	1188	to
	1189	a
	1190	separate
	1191	file -
	1192	Bug
	1193	Fix:
	1194	xls2csv(),
	1195	xls2tab()
	1196	failed
	1197	to
	1198	pass
	1199	the
	1200	provided
	1201	'perl'
	1202
	1203	parameter
	1204	to
	1205	xls2sep() -
	1206	New
	1207	Feature:
	1208	xls2sep()
	1209	(and
	1210	hence
	1211	xls2csv,
	1212	xls2tab,
	1213	and
	1214	read.xls)
	1215
	1216	now
	1217	supports
	1218	ftp
	1219	URLs.
	1220
	1221	2009-12-06 22:34 arnima
	1222
	1223	* [r1369]
	1224	R/Args.R,
	1225	man/Args.Rd:
	1226	Minor
	1227	improvements
	1228	of
	1229	Args().
	1230
	1231	2009-12-06 03:12 arnima
	1232
	1233	* [r1368]
	1234	R/ll.R,
	1235	man/ll.Rd:
	1236	Improved
	1237	ll()
	1238	so
	1239	user
	1240	can
	1241	limit
	1242	output
	1243	to
	1244	specified
	1245	classes
	1246
	1247	2009-11-16 12:57 arnima
	1248
	1249	* [r1366]
	1250	R/ll.R:
	1251	ll(.GlobalEnv)
	1252	does
	1253	not
	1254	crash
	1255	anymore
	1256
	1257	2009-08-20 14:54 warnes
	1258
	1259	* [r1357]
	1260	man/cbindX.Rd,
	1261	man/getDateTimePart.Rd,
	1262	man/mapLevels.Rd,
	1263	man/nPairs.Rd,
	1264	man/trim.Rd,
	1265	man/trimSum.Rd,
	1266	man/unknown.Rd,
	1267	man/write.fwf.Rd:
	1268	Replace
	1269	\ldots
	1270	with
	1271	\dots
	1272	to
	1273	make
	1274	the
	1275	new
	1276	R
	1277	CMD
	1278	CHECK
	1279	happy.
	1280
	1281	2009-08-19 17:39 warnes
	1282
	1283	* [r1355]
	1284	DESCRIPTION:
	1285	Update
	1286	for
	1287	2.6.1
	1288	release
	1289
	1290	2009-08-19 17:37 warnes
	1291
	1292	* [r1354]
	1293	inst/unitTests/runit.getDateTimeParts.R:
	1294	Modify
	1295	unit
	1296	tests
	1297	to
	1298	avoid
	1299	issues
	1300	related
	1301	to
	1302	zime
	1303	zones.
	1304
	1305	2009-08-05 01:57 warnes
	1306
	1307	* [r1353]
	1308	inst/doc/mapLevels.pdf,
	1309	inst/doc/unknown.pdf:
	1310	Update
	1311	vignettes
	1312	for
	1313	2.6.0
	1314	release
	1315
	1316	2009-08-05 01:57 warnes
	1317
	1318	* [r1352]
	1319	man/frameApply.Rd:
	1320	Fix
	1321	formatting
	1322	warning
	1323	in
	1324	frameApply
	1325	man
	1326	page
	1327
	1328	2009-07-16 10:55 ggorjan
	1329
	1330	* [r1350]
	1331	man/write.fwf.Rd:
	1332	Reverting
	1333	recent
	1334	change
	1335	and
	1336	clarifying
	1337	the
	1338	meaning.
	1339
	1340	2009-07-16 03:23 warnes
	1341
	1342	* [r1349]
	1343	inst/doc/mapLevels.pdf,
	1344	inst/doc/unknown.pdf,
	1345	man/resample.Rd:
	1346	Add
	1347	contents
	1348	of
	1349	\value
	1350	section
	1351	for
	1352	resample()
	1353	man
	1354	page
	1355
	1356	2009-07-16 03:15 warnes
	1357
	1358	* [r1348]
	1359	tests/tests.write.fwf.Rout.save:
	1360	Update
	1361	test
	1362	output
	1363	to
	1364	remove
	1365	R
	1366	CMD
	1367	check
	1368	warning
	1369
	1370	2009-07-16 03:10 warnes
	1371
	1372	* [r1347]
	1373	inst/NEWS:
	1374	Update
	1375	ChangeLog
	1376	and
	1377	NEWS
	1378	for
	1379	gdata
	1380	2.6.0
	1381	release
	1382
	1383	2009-07-16 02:56 warnes
	1384
	1385	* [r1346]
	1386	DESCRIPTION:
	1387	Update
	1388	DESCRIPTION
434	1389	file
435		- Move qQuote.ascii to a separate file
436
437		- Bug Fix: xls2csv(), xls2tab() failed to pass the provided
438		'perl'
439		parameter to xls2sep()
440
441		- New Feature: xls2sep() (and hence xls2csv, xls2tab, and
442		read.xls)
443		now supports ftp URLs.
444
445		2009-12-06 22:34 arnima
446
447		* [r1369] R/Args.R, man/Args.Rd: Minor improvements of Args().
448
449		2009-12-06 03:12 arnima
450
451		* [r1368] R/ll.R, man/ll.Rd: Improved ll() so user can limit output
452		to specified classes
453
454		2009-11-16 12:57 arnima
455
456		* [r1366] R/ll.R: ll(.GlobalEnv) does not crash anymore
457
458		2009-08-20 14:54 warnes
459
460		* [r1357] man/cbindX.Rd, man/getDateTimePart.Rd, man/mapLevels.Rd,
461		man/nPairs.Rd, man/trim.Rd, man/trimSum.Rd, man/unknown.Rd,
462		man/write.fwf.Rd: Replace \ldots with \dots to make the new R CMD
463		CHECK happy.
464
465		2009-08-19 17:39 warnes
466
467		* [r1355] DESCRIPTION: Update for 2.6.1 release
468
469		2009-08-19 17:37 warnes
470
471		* [r1354] inst/unitTests/runit.getDateTimeParts.R: Modify unit
472		tests to avoid issues related to zime zones.
473
474		2009-08-05 01:57 warnes
475
476		* [r1353] inst/doc/mapLevels.pdf, inst/doc/unknown.pdf: Update
477		vignettes for 2.6.0 release
478
479		2009-08-05 01:57 warnes
480
481		* [r1352] man/frameApply.Rd: Fix formatting warning in frameApply
482		man page
483
484		2009-07-16 10:55 ggorjan
485
486		* [r1350] man/write.fwf.Rd: Reverting recent change and clarifying
487		the meaning.
488
489		2009-07-16 03:23 warnes
490
491		* [r1349] inst/doc/mapLevels.pdf, inst/doc/unknown.pdf,
492		man/resample.Rd: Add contents of \value section for resample()
493		man page
494
495		2009-07-16 03:15 warnes
496
497		* [r1348] tests/tests.write.fwf.Rout.save: Update test output to
498		remove R CMD check warning
499
500		2009-07-16 03:10 warnes
501
502		* [r1347] inst/NEWS: Update ChangeLog and NEWS for gdata 2.6.0
503		release
504
505		2009-07-16 02:56 warnes
506
507		* [r1346] DESCRIPTION: Update DESCRIPTION file for gdata 2.6.0
	1390	for
	1391	gdata
	1392	2.6.0
508	1393
509	1394	2009-07-16 02:55 warnes
510	1395
511		* [r1345] inst/doc/gregmisc.tex, inst/doc/mapLevels.pdf,
512		inst/doc/unknown.pdf, man/ConvertMedUnits.Rd,
513		man/aggregate.table.Rd, man/combine.Rd, man/interleave.Rd,
514		man/matchcols.Rd, man/nobs.Rd, man/rename.vars.Rd,
515		man/reorder.Rd, man/trim.Rd, man/unmatrix.Rd,
516		man/upperTriangle.Rd: Correct Greg's email address
	1396	* [r1345]
	1397	inst/doc/gregmisc.tex,
	1398	inst/doc/mapLevels.pdf,
	1399	inst/doc/unknown.pdf,
	1400	man/ConvertMedUnits.Rd,
	1401	man/aggregate.table.Rd,
	1402	man/combine.Rd,
	1403	man/interleave.Rd,
	1404	man/matchcols.Rd,
	1405	man/nobs.Rd,
	1406	man/rename.vars.Rd,
	1407	man/reorder.Rd,
	1408	man/trim.Rd,
	1409	man/unmatrix.Rd,
	1410	man/upperTriangle.Rd:
	1411	Correct
	1412	Greg's
	1413	email
	1414	address
517	1415
518	1416	2009-07-16 02:52 warnes
519	1417
520		* [r1344] man/write.fwf.Rd: Correct minor typos in write.fwf() man
	1418	* [r1344]
	1419	man/write.fwf.Rd:
	1420	Correct
	1421	minor
	1422	typos
	1423	in
	1424	write.fwf()
	1425	man
521	1426	page
522	1427
523	1428	2009-07-16 02:50 warnes
524	1429
525		* [r1343] man/resample.Rd: Correct page for resample()
	1430	* [r1343]
	1431	man/resample.Rd:
	1432	Correct
	1433	page
	1434	for
	1435	resample()
526	1436
527	1437	2009-07-16 02:49 warnes
528	1438
529		* [r1342] NAMESPACE, R/read.xls.R, inst/perl/xls2tab.pl,
530		man/read.xls.Rd: Add support for using tab for field separator
531		during translation from xls format in read.xls
	1439	* [r1342]
	1440	NAMESPACE,
	1441	R/read.xls.R,
	1442	inst/perl/xls2tab.pl,
	1443	man/read.xls.Rd:
	1444	Add
	1445	support
	1446	for
	1447	using
	1448	tab
	1449	for
	1450	field
	1451	separator
	1452	during
	1453	translation
	1454	from
	1455	xls
	1456	format
	1457	in
	1458	read.xls
532	1459
533	1460	2009-04-19 23:25 arnima
534	1461
535		* [r1314] R/env.R, R/ll.R: Changed object.size(object) to
	1462	* [r1314]
	1463	R/env.R,
	1464	R/ll.R:
	1465	Changed
	1466	object.size(object)
	1467	to
536	1468	unclass(object.size(object)).
537	1469
538	1470	2008-12-31 13:30 ggorjan
539	1471
540		* [r1312] NAMESPACE, inst/NEWS: Documenting changes and exporting
541		the functions.
	1472	* [r1312]
	1473	NAMESPACE,
	1474	inst/NEWS:
	1475	Documenting
	1476	changes
	1477	and
	1478	exporting
	1479	the
	1480	functions.
542	1481
543	1482	2008-12-31 13:30 ggorjan
544	1483
545		* [r1311] R/object.size.R, man/humanReadable.Rd,
546		man/object.size.Rd: Enhanced function object.size that returns
547		the size of multiple objects. There is also a handy print method
548		that can print size of an object in "human readable" format when
549		options(humanReadable=TRUE) or print(object.size(x),
	1484	* [r1311]
	1485	R/object.size.R,
	1486	man/humanReadable.Rd,
	1487	man/object.size.Rd:
	1488	Enhanced
	1489	function
	1490	object.size
	1491	that
	1492	returns
	1493	the
	1494	size
	1495	of
	1496	multiple
	1497	objects.
	1498	There
	1499	is
	1500	also
	1501	a
	1502	handy
	1503	print
	1504	method
	1505	that
	1506	can
	1507	print
	1508	size
	1509	of
	1510	an
	1511	object
	1512	in
	1513	"human
	1514	readable"
	1515	format
	1516	when
	1517	options(humanReadable=TRUE)
	1518	or
	1519	print(object.size(x),
550	1520	humanReadable=TRUE).
551	1521
552	1522	2008-12-31 13:29 ggorjan
553	1523
554		* [r1310] R/wideByFactor.R, inst/unitTests/runit.wideByFactor.R,
555		man/wideByFactor.Rd: New function wideByFactor that reshapes
556		given dataset by a given factor - it creates a "multivariate"
	1524	* [r1310]
	1525	R/wideByFactor.R,
	1526	inst/unitTests/runit.wideByFactor.R,
	1527	man/wideByFactor.Rd:
	1528	New
	1529	function
	1530	wideByFactor
	1531	that
	1532	reshapes
	1533	given
	1534	dataset
	1535	by
	1536	a
	1537	given
	1538	factor
	1539	-
	1540	it
	1541	creates
	1542	a
	1543	"multivariate"
557	1544	data.frame.
558	1545
559	1546	2008-12-31 13:28 ggorjan
560	1547
561		* [r1309] R/nPairs.R, inst/unitTests/runit.nPairs.R, man/nPairs.Rd:
562		New function nPairs that gives the number of variable pairs in a
563		data.frame or a matrix.
	1548	* [r1309]
	1549	R/nPairs.R,
	1550	inst/unitTests/runit.nPairs.R,
	1551	man/nPairs.Rd:
	1552	New
	1553	function
	1554	nPairs
	1555	that
	1556	gives
	1557	the
	1558	number
	1559	of
	1560	variable
	1561	pairs
	1562	in
	1563	a
	1564	data.frame
	1565	or
	1566	a
	1567	matrix.
564	1568
565	1569	2008-12-31 13:26 ggorjan
566	1570
567		* [r1308] R/getDateTimeParts.R,
568		inst/unitTests/runit.getDateTimeParts.R, man/getDateTimePart.Rd:
569		New functions getYear, getMonth, getDay, getHour, getMin, and
570		getSec for extracting the date/time parts from objects of a
571		date/time class.
	1571	* [r1308]
	1572	R/getDateTimeParts.R,
	1573	inst/unitTests/runit.getDateTimeParts.R,
	1574	man/getDateTimePart.Rd:
	1575	New
	1576	functions
	1577	getYear,
	1578	getMonth,
	1579	getDay,
	1580	getHour,
	1581	getMin,
	1582	and
	1583	getSec
	1584	for
	1585	extracting
	1586	the
	1587	date/time
	1588	parts
	1589	from
	1590	objects
	1591	of
	1592	a
	1593	date/time
	1594	class.
572	1595
573	1596	2008-12-31 13:25 ggorjan
574	1597
575		* [r1307] R/bindData.R, inst/unitTests/runit.bindData.R,
576		man/bindData.Rd: New function bindData that binds two data frames
577		into a multivariate data frame in a different way than merge.
	1598	* [r1307]
	1599	R/bindData.R,
	1600	inst/unitTests/runit.bindData.R,
	1601	man/bindData.Rd:
	1602	New
	1603	function
	1604	bindData
	1605	that
	1606	binds
	1607	two
	1608	data
	1609	frames
	1610	into
	1611	a
	1612	multivariate
	1613	data
	1614	frame
	1615	in
	1616	a
	1617	different
	1618	way
	1619	than
	1620	merge.
578	1621
579	1622	2008-12-31 13:24 ggorjan
580	1623
581		* [r1306] R/runRUnitTests.R, inst/unitTests/Makefile,
582		inst/unitTests/runRUnitTests.R, man/gdata-package.Rd,
583		man/runRUnitTests.Rd, tests/doRUnit.R: New function
584		.runRUnitTestsGdata that enables run of all RUnit tests during
585		the R CMD check as well as directly from within R.
	1624	* [r1306]
	1625	R/runRUnitTests.R,
	1626	inst/unitTests/Makefile,
	1627	inst/unitTests/runRUnitTests.R,
	1628	man/gdata-package.Rd,
	1629	man/runRUnitTests.Rd,
	1630	tests/doRUnit.R:
	1631	New
	1632	function
	1633	.runRUnitTestsGdata
	1634	that
	1635	enables
	1636	run
	1637	of
	1638	all
	1639	RUnit
	1640	tests
	1641	during
	1642	the
	1643	R
	1644	CMD
	1645	check
	1646	as
	1647	well
	1648	as
	1649	directly
	1650	from
	1651	within
	1652	R.
586	1653
587	1654	2008-12-20 22:34 ggorjan
588	1655
589		* [r1305] NAMESPACE, R/trimSum.R, inst/NEWS,
590		inst/unitTests/runit.trimSum.R, man/trimSum.Rd:
	1656	* [r1305]
	1657	NAMESPACE,
	1658	R/trimSum.R,
	1659	inst/NEWS,
	1660	inst/unitTests/runit.trimSum.R,
	1661	man/trimSum.Rd:
	1662
591	1663
592	1664	2008-12-20 22:28 ggorjan
593	1665
594		* [r1304] tests/tests.write.fwf.Rout.save: To remove some output in
595		the R CMD check
	1666	* [r1304]
	1667	tests/tests.write.fwf.Rout.save:
	1668	To
	1669	remove
	1670	some
	1671	output
	1672	in
	1673	the
	1674	R
	1675	CMD
	1676	check
596	1677
597	1678	2008-08-05 11:47 ggorjan
598	1679
599		* [r1300] DESCRIPTION, NAMESPACE, R/cbindX.R, R/write.fwf.R,
600		inst/NEWS, inst/doc/mapLevels.pdf, inst/doc/unknown.pdf,
601		inst/unitTests/runit.cbindX.R, inst/unitTests/runit.write.fwf.R,
602		man/cbindX.Rd, man/write.fwf.Rd, tests/tests.write.fwf.R,
603		tests/tests.write.fwf.Rout.save: - Increased version to 2.5.0
604
605		- New function cbindX that can bind objects with different number
606		of rows.
607
608		- write.fwf gains width argument. Unknown values can increase or
	1680	* [r1300]
	1681	DESCRIPTION,
	1682	NAMESPACE,
	1683	R/cbindX.R,
	1684	R/write.fwf.R,
	1685	inst/NEWS,
	1686	inst/doc/mapLevels.pdf,
	1687	inst/doc/unknown.pdf,
	1688	inst/unitTests/runit.cbindX.R,
	1689	inst/unitTests/runit.write.fwf.R,
	1690	man/cbindX.Rd,
	1691	man/write.fwf.Rd,
	1692	tests/tests.write.fwf.R,
	1693	tests/tests.write.fwf.Rout.save:
	1694	-
	1695	Increased
	1696	version
	1697	to
	1698	2.5.0 -
	1699	New
	1700	function
	1701	cbindX
	1702	that
	1703	can
	1704	bind
	1705	objects
	1706	with
	1707	different
	1708	number
	1709	of
	1710	rows. -
	1711	write.fwf
	1712	gains
	1713	width
	1714	argument.
	1715	Unknown
	1716	values
	1717	can
	1718	increase
	1719	or
609	1720	decrease
610		the width of the columns. Additional tests and documentation
	1721
	1722	the
	1723	width
	1724	of
	1725	the
	1726	columns.
	1727	Additional
	1728	tests
	1729	and
	1730	documentation
611	1731	fixes.
612	1732
613	1733	2008-06-30 22:29 arnima
614	1734
615		* [r1299] R/env.R, R/ll.R, man/env.Rd, man/ll.Rd: Simplified
616		default 'unit' argument from c("KB","MB","bytes") to "KB".
	1735	* [r1299]
	1736	R/env.R,
	1737	R/ll.R,
	1738	man/env.Rd,
	1739	man/ll.Rd:
	1740	Simplified
	1741	default
	1742	'unit'
	1743	argument
	1744	from
	1745	c("KB","MB","bytes")
	1746	to
	1747	"KB".
617	1748
618	1749	2008-05-13 03:16 warnes
619	1750
620		* [r1270] inst/NEWS, inst/doc/mapLevels.pdf, inst/doc/unknown.pdf:
621		Update NEWS file for 2.4.2
	1751	* [r1270]
	1752	inst/NEWS,
	1753	inst/doc/mapLevels.pdf,
	1754	inst/doc/unknown.pdf:
	1755	Update
	1756	NEWS
	1757	file
	1758	for
	1759	2.4.2
622	1760
623	1761	2008-05-13 03:09 warnes
624	1762
625		* [r1269] R/read.xls.R: Use path.expand() to give proper full path
626		to xls file to be translated by read.xls()
	1763	* [r1269]
	1764	R/read.xls.R:
	1765	Use
	1766	path.expand()
	1767	to
	1768	give
	1769	proper
	1770	full
	1771	path
	1772	to
	1773	xls
	1774	file
	1775	to
	1776	be
	1777	translated
	1778	by
	1779	read.xls()
627	1780
628	1781	2008-05-13 02:55 warnes
629	1782
630		* [r1268] R/read.xls.R: Modifed read.xls() failed to return the
631		converted data... fixed.
	1783	* [r1268]
	1784	R/read.xls.R:
	1785	Modifed
	1786	read.xls()
	1787	failed
	1788	to
	1789	return
	1790	the
	1791	converted
	1792	data...
	1793	fixed.
632	1794
633	1795	2008-05-13 02:47 warnes
634	1796
635		* [r1267] inst/perl/Spreadsheet/ParseExcel/Utility.pm: Correct
636		broken patch for open-office support
	1797	* [r1267]
	1798	inst/perl/Spreadsheet/ParseExcel/Utility.pm:
	1799	Correct
	1800	broken
	1801	patch
	1802	for
	1803	open-office
	1804	support
637	1805
638	1806	2008-05-13 02:40 warnes
639	1807
640		* [r1266] DESCRIPTION, R/read.xls.R: For read.xls() and xls2csv():
641		- Implement more informative log messages when verbose=TRUE
642		- Quote temporary file name to avoid errors when calling perl to
643		do the work.
644		- Add better error messages, particularly when perl fails to
645		generate an
646		output .csv file.
647
648		Update version number in DESCRIPTION.
	1808	* [r1266]
	1809	DESCRIPTION,
	1810	R/read.xls.R:
	1811	For
	1812	read.xls()
	1813	and
	1814	xls2csv():
	1815
	1816
	1817	-
	1818	Implement
	1819	more
	1820	informative
	1821	log
	1822	messages
	1823	when
	1824	verbose=TRUE
	1825
	1826	-
	1827	Quote
	1828	temporary
	1829	file
	1830	name
	1831	to
	1832	avoid
	1833	errors
	1834	when
	1835	calling
	1836	perl
	1837	to
	1838	do
	1839	the
	1840	work.
	1841
	1842	-
	1843	Add
	1844	better
	1845	error
	1846	messages,
	1847	particularly
	1848	when
	1849	perl
	1850	fails
	1851	to
	1852	generate
	1853	an
	1854
	1855
	1856
	1857	output
	1858	.csv
	1859	file. Update
	1860	version
	1861	number
	1862	in
	1863	DESCRIPTION.
649	1864
650	1865	2008-05-12 00:00 warnes
651	1866
652		* [r1265] inst/perl/Spreadsheet/ParseExcel/Utility.pm: Patch to
653		correct issue with OpenOffice-created XLS files. Thanks to
654		Robert Burns for pointing out the patch at
	1867	* [r1265]
	1868	inst/perl/Spreadsheet/ParseExcel/Utility.pm:
	1869	Patch
	1870	to
	1871	correct
	1872	issue
	1873	with
	1874	OpenOffice-created
	1875	XLS
	1876	files.
	1877
	1878	Thanks
	1879	to Robert
	1880	Burns
	1881	for
	1882	pointing
	1883	out
	1884	the
	1885	patch
	1886	at
655	1887	http://rt.cpan.org/Public/Bug/Display.html?id=7206
656	1888
657	1889	2008-03-25 01:01 warnes
658	1890
659		* [r1250] DESCRIPTION, inst/NEWS, inst/doc/mapLevels.pdf,
660		inst/doc/unknown.pdf: Update for version 2.4.1
	1891	* [r1250]
	1892	DESCRIPTION,
	1893	inst/NEWS,
	1894	inst/doc/mapLevels.pdf,
	1895	inst/doc/unknown.pdf:
	1896	Update
	1897	for
	1898	version
	1899	2.4.1
661	1900
662	1901	2008-03-25 00:57 warnes
663	1902
664		* [r1249] inst/xls/iris.xls: Example iris.xls file didn't complete
665		& properly formatted iris data set. Fixed.
	1903	* [r1249]
	1904	inst/xls/iris.xls:
	1905	Example
	1906	iris.xls
	1907	file
	1908	didn't
	1909	complete
	1910	&
	1911	properly
	1912	formatted
	1913	iris
	1914	data
	1915	set.
	1916	Fixed.
666	1917
667	1918	2008-03-25 00:51 warnes
668	1919
669		* [r1248] inst/perl/IO/AtomicFile.pm, inst/perl/IO/InnerFile.pm,
670		inst/perl/IO/Lines.pm, inst/perl/IO/Scalar.pm,
671		inst/perl/IO/ScalarArray.pm, inst/perl/IO/Stringy.pm,
672		inst/perl/IO/Wrap.pm, inst/perl/IO/WrapTie.pm,
	1920	* [r1248]
	1921	inst/perl/IO/AtomicFile.pm,
	1922	inst/perl/IO/InnerFile.pm,
	1923	inst/perl/IO/Lines.pm,
	1924	inst/perl/IO/Scalar.pm,
	1925	inst/perl/IO/ScalarArray.pm,
	1926	inst/perl/IO/Stringy.pm,
	1927	inst/perl/IO/Wrap.pm,
	1928	inst/perl/IO/WrapTie.pm,
673	1929	inst/perl/OLE/Storage_Lite.pm,
674	1930	inst/perl/Spreadsheet/ParseExcel.pm,
675	1931	inst/perl/Spreadsheet/ParseExcel/Dump.pm,

678	1934	inst/perl/Spreadsheet/ParseExcel/FmtJapan2.pm,
679	1935	inst/perl/Spreadsheet/ParseExcel/FmtUnicode.pm,
680	1936	inst/perl/Spreadsheet/ParseExcel/SaveParser.pm,
681		inst/perl/Spreadsheet/ParseExcel/Utility.pm: Update perl modules
682		to latest versions
	1937	inst/perl/Spreadsheet/ParseExcel/Utility.pm:
	1938	Update
	1939	perl
	1940	modules
	1941	to
	1942	latest
	1943	versions
683	1944
684	1945	2008-03-24 23:56 warnes
685	1946
686		* [r1247] man/read.xls.Rd: Fix typo in win32 example for read.xls()
	1947	* [r1247]
	1948	man/read.xls.Rd:
	1949	Fix
	1950	typo
	1951	in
	1952	win32
	1953	example
	1954	for
	1955	read.xls()
687	1956
688	1957	2008-03-11 20:22 warnes
689	1958
690		* [r1246] NAMESPACE: Add xls2csv to exported function list
	1959	* [r1246]
	1960	NAMESPACE:
	1961	Add
	1962	xls2csv
	1963	to
	1964	exported
	1965	function
	1966	list
691	1967
692	1968	2008-01-30 19:55 warnes
693	1969
694		* [r1241] ChangeLog, DESCRIPTION, inst/NEWS: Update DESCRIPTION and
695		NEWS for release 2.4.0
	1970	* [r1241]
	1971	ChangeLog,
	1972	DESCRIPTION,
	1973	inst/NEWS:
	1974	Update
	1975	DESCRIPTION
	1976	and
	1977	NEWS
	1978	for
	1979	release
	1980	2.4.0
696	1981
697	1982	2008-01-29 11:26 arnima
698	1983
699		* [r1240] man/keep.Rd: Added argument 'all'.
	1984	* [r1240]
	1985	man/keep.Rd:
	1986	Added
	1987	argument
	1988	'all'.
700	1989
701	1990	2008-01-29 11:09 arnima
702	1991
703		* [r1239] R/keep.R: Added argument 'all'.
	1992	* [r1239]
	1993	R/keep.R:
	1994	Added
	1995	argument
	1996	'all'.
704	1997
705	1998	2007-10-22 02:24 warnes
706	1999
707	2000	* [r1196]
708	2001	branches/GenerateFORMATSfromFactorObjects/SASxport/DESCRIPTION,
709		trunk/MSOfficeUtil/DESCRIPTION, trunk/RMCMC/DESCRIPTION,
710		trunk/Rlsf/DESCRIPTION, trunk/SASxport/DESCRIPTION,
711		trunk/bwRF/DESCRIPTION, trunk/exp.ssize/DESCRIPTION,
712		trunk/fork/DESCRIPTION, DESCRIPTION, trunk/gmodels/DESCRIPTION,
713		trunk/gplots/DESCRIPTION, trunk/gregmisc/DESCRIPTION,
714		trunk/ssize/DESCRIPTION: Clarify GPL version
	2002	trunk/MSOfficeUtil/DESCRIPTION,
	2003	trunk/RMCMC/DESCRIPTION,
	2004	trunk/Rlsf/DESCRIPTION,
	2005	trunk/SASxport/DESCRIPTION,
	2006	trunk/bwRF/DESCRIPTION,
	2007	trunk/exp.ssize/DESCRIPTION,
	2008	trunk/fork/DESCRIPTION,
	2009	DESCRIPTION,
	2010	trunk/gmodels/DESCRIPTION,
	2011	trunk/gplots/DESCRIPTION,
	2012	trunk/gregmisc/DESCRIPTION,
	2013	trunk/ssize/DESCRIPTION:
	2014	Clarify
	2015	GPL
	2016	version
715	2017
716	2018	2007-09-10 13:39 ggorjan
717	2019
718		* [r1169] man/upperTriangle.Rd: removed unmatched brace
	2020	* [r1169]
	2021	man/upperTriangle.Rd:
	2022	removed
	2023	unmatched
	2024	brace
719	2025
720	2026	2007-09-10 13:02 ggorjan
721	2027
722		* [r1168] man/gdata-package.Rd: adding alias
	2028	* [r1168]
	2029	man/gdata-package.Rd:
	2030	adding
	2031	alias
723	2032
724	2033	2007-09-06 14:06 ggorjan
725	2034
726		* [r1162] man/gdata-package.Rd: keyword
	2035	* [r1162]
	2036	man/gdata-package.Rd:
	2037	keyword
727	2038
728	2039	2007-08-21 15:36 ggorjan
729	2040
730		* [r1154] man/gdata-package.Rd: package help page
	2041	* [r1154]
	2042	man/gdata-package.Rd:
	2043	package
	2044	help
	2045	page
731	2046
732	2047	2007-08-21 15:30 ggorjan
733	2048
734		* [r1153] NEWS, inst/NEWS: move
	2049	* [r1153]
	2050	NEWS,
	2051	inst/NEWS:
	2052	move
735	2053
736	2054	2007-08-21 15:29 ggorjan
737	2055
738		* [r1152] NEWS: move
	2056	* [r1152]
	2057	NEWS:
	2058	move
739	2059
740	2060	2007-08-20 10:18 ggorjan
741	2061
742		* [r1151] inst/doc/mapLevels.tex: clean
	2062	* [r1151]
	2063	inst/doc/mapLevels.tex:
	2064	clean
743	2065
744	2066	2007-08-20 10:17 ggorjan
745	2067
746		* [r1150] inst/doc/mapLevels.Rnw, inst/doc/mapLevels.pdf,
747		inst/doc/mapLevels.tex: a real vignette
	2068	* [r1150]
	2069	inst/doc/mapLevels.Rnw,
	2070	inst/doc/mapLevels.pdf,
	2071	inst/doc/mapLevels.tex:
	2072	a
	2073	real
	2074	vignette
748	2075
749	2076	2007-08-20 10:00 ggorjan
750	2077
751		* [r1149] inst/doc/unknown.Rnw, inst/doc/unknown.pdf,
752		inst/doc/unknown.tex: a real vignette
	2078	* [r1149]
	2079	inst/doc/unknown.Rnw,
	2080	inst/doc/unknown.pdf,
	2081	inst/doc/unknown.tex:
	2082	a
	2083	real
	2084	vignette
753	2085
754	2086	2007-08-20 08:18 ggorjan
755	2087
756		* [r1148] man/unknown.Rd: additional keyword for searchig
	2088	* [r1148]
	2089	man/unknown.Rd:
	2090	additional
	2091	keyword
	2092	for
	2093	searchig
757	2094
758	2095	2007-08-17 12:40 ggorjan
759	2096
760		* [r1147] man/unknown.Rd: keyword
	2097	* [r1147]
	2098	man/unknown.Rd:
	2099	keyword
761	2100
762	2101	2007-07-22 09:27 arnima
763	2102
764		* [r1103] R/Args.R, R/keep.R: Reverted back to
765		as.character(substitute(x)), so user can run keep(x),
766		keep("x"), Args(x), and Args("x").
	2103	* [r1103]
	2104	R/Args.R,
	2105	R/keep.R:
	2106	Reverted
	2107	back
	2108	to
	2109	as.character(substitute(x)),
	2110	so
	2111	user
	2112	can
	2113	run
	2114	keep(x), keep("x"),
	2115	Args(x),
	2116	and
	2117	Args("x").
767	2118
768	2119	2007-07-21 18:57 arnima
769	2120
770		* [r1102] R/keep.R: Changed as.character(substitute()) to
771		deparse(substitute()), following
772		help(substitute) recommendation.
	2121	* [r1102]
	2122	R/keep.R:
	2123	Changed
	2124	as.character(substitute())
	2125	to
	2126	deparse(substitute()),
	2127	following help(substitute)
	2128	recommendation.
773	2129
774	2130	2007-07-21 18:49 arnima
775	2131
776		* [r1101] R/Args.R: Changed as.character(substitute()) to
777		deparse(substitute()), following
778		help(substitute) recommendation.
	2132	* [r1101]
	2133	R/Args.R:
	2134	Changed
	2135	as.character(substitute())
	2136	to
	2137	deparse(substitute()),
	2138	following help(substitute)
	2139	recommendation.
779	2140
780	2141	2007-07-10 17:51 warnes
781	2142
782		* [r1099] R/read.xls.R, man/read.xls.Rd: Update read.xls() code and
783		docs with enhacements by Gabor Grothendieck
	2143	* [r1099]
	2144	R/read.xls.R,
	2145	man/read.xls.Rd:
	2146	Update
	2147	read.xls()
	2148	code
	2149	and
	2150	docs
	2151	with
	2152	enhacements
	2153	by
	2154	Gabor
	2155	Grothendieck
784	2156
785	2157	2007-06-06 10:24 ggorjan
786	2158
787		* [r1097] inst/doc/unknown.pdf, inst/doc/unknown.tex: last edits
788		from newsletter
	2159	* [r1097]
	2160	inst/doc/unknown.pdf,
	2161	inst/doc/unknown.tex:
	2162	last
	2163	edits
	2164	from
	2165	newsletter
789	2166
790	2167	2007-06-06 10:19 ggorjan
791	2168
792		* [r1096] R/drop.levels.R, man/drop.levels.Rd: drop levels as
793		suggested by Brian Ripley
	2169	* [r1096]
	2170	R/drop.levels.R,
	2171	man/drop.levels.Rd:
	2172	drop
	2173	levels
	2174	as
	2175	suggested
	2176	by
	2177	Brian
	2178	Ripley
794	2179
795	2180	2007-06-06 10:17 ggorjan
796	2181
797		* [r1095] inst/unitTests/Makefile, tests/doRUnit.R: better
798		integration of unit tests
	2182	* [r1095]
	2183	inst/unitTests/Makefile,
	2184	tests/doRUnit.R:
	2185	better
	2186	integration
	2187	of
	2188	unit
	2189	tests
799	2190
800	2191	2007-06-06 10:15 ggorjan
801	2192
802		* [r1094] R/mapLevels.R, R/unknown.R: making codetools happy
	2193	* [r1094]
	2194	R/mapLevels.R,
	2195	R/unknown.R:
	2196	making
	2197	codetools
	2198	happy
803	2199
804	2200	2007-01-28 10:42 arnima
805	2201
806		* [r1042] R/keep.R: Throw warnings rather than errors
	2202	* [r1042]
	2203	R/keep.R:
	2204	Throw
	2205	warnings
	2206	rather
	2207	than
	2208	errors
807	2209
808	2210	2007-01-27 11:36 arnima
809	2211
810		* [r1041] R/keep.R: Meaningful error message is given when
811		requested object does not exist
	2212	* [r1041]
	2213	R/keep.R:
	2214	Meaningful
	2215	error
	2216	message
	2217	is
	2218	given
	2219	when
	2220	requested
	2221	object
	2222	does
	2223	not
	2224	exist
812	2225
813	2226	2007-01-27 11:35 arnima
814	2227
815		* [r1040] R/is.what.R: is.* tests that return NA are not reported
816		is.what recursion is avoided
	2228	* [r1040]
	2229	R/is.what.R:
	2230	is.*
	2231	tests
	2232	that
	2233	return
	2234	NA
	2235	are
	2236	not
	2237	reported is.what
	2238	recursion
	2239	is
	2240	avoided
817	2241
818	2242	2006-11-30 21:38 ggorjan
819	2243
820		* [r1035] R/unknown.R: minor commet to the code
	2244	* [r1035]
	2245	R/unknown.R:
	2246	minor
	2247	commet
	2248	to
	2249	the
	2250	code
821	2251
822	2252	2006-11-30 21:36 ggorjan
823	2253
824		* [r1034] inst/doc/mapLevels.pdf, inst/doc/mapLevels.tex:
825		description of mapLevels methods
	2254	* [r1034]
	2255	inst/doc/mapLevels.pdf,
	2256	inst/doc/mapLevels.tex:
	2257	description
	2258	of
	2259	mapLevels
	2260	methods
826	2261
827	2262	2006-11-30 21:32 ggorjan
828	2263
829		* [r1033] inst/doc/unknown.pdf, inst/doc/unknown.tex: description
830		of unknown methods
	2264	* [r1033]
	2265	inst/doc/unknown.pdf,
	2266	inst/doc/unknown.tex:
	2267	description
	2268	of
	2269	unknown
	2270	methods
831	2271
832	2272	2006-11-16 13:05 ggorjan
833	2273
834		* [r1013] R/c.factor.R, man/c.factor.Rd: seems that c.factor was
835		not a good idea and there were better examples posted on r-devel
	2274	* [r1013]
	2275	R/c.factor.R,
	2276	man/c.factor.Rd:
	2277	seems
	2278	that
	2279	c.factor
	2280	was
	2281	not
	2282	a
	2283	good
	2284	idea
	2285	and
	2286	there
	2287	were
	2288	better
	2289	examples
	2290	posted
	2291	on
	2292	r-devel
836	2293	list
837	2294
838	2295	2006-11-14 22:25 ggorjan
839	2296
840		* [r1012] man/combine.Rd, man/frameApply.Rd, trunk/gmodels/R/ci.R,
841		trunk/gmodels/R/fast.prcomp.R, trunk/gmodels/man/ci.Rd,
842		trunk/gplots/R/bandplot.R, trunk/gplots/R/boxplot.n.R,
843		trunk/gplots/R/lowess.R, trunk/gplots/R/plot.lm.R,
844		trunk/gplots/R/plotCI.R, trunk/gplots/R/plotmeans.R,
845		trunk/gplots/R/residplot.R, trunk/gplots/R/wapply.R,
846		trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/plotCI.Rd,
847		trunk/gplots/man/plotmeans.Rd, trunk/gtools/R/combinations.R,
848		trunk/gtools/R/running.R, trunk/gtools/man/ELISA.Rd,
849		trunk/gtools/man/combinations.Rd: Removed executable property
	2297	* [r1012]
	2298	man/combine.Rd,
	2299	man/frameApply.Rd,
	2300	trunk/gmodels/R/ci.R,
	2301	trunk/gmodels/R/fast.prcomp.R,
	2302	trunk/gmodels/man/ci.Rd,
	2303	trunk/gplots/R/bandplot.R,
	2304	trunk/gplots/R/boxplot.n.R,
	2305	trunk/gplots/R/lowess.R,
	2306	trunk/gplots/R/plot.lm.R,
	2307	trunk/gplots/R/plotCI.R,
	2308	trunk/gplots/R/plotmeans.R,
	2309	trunk/gplots/R/residplot.R,
	2310	trunk/gplots/R/wapply.R,
	2311	trunk/gplots/man/boxplot.n.Rd,
	2312	trunk/gplots/man/plotCI.Rd,
	2313	trunk/gplots/man/plotmeans.Rd,
	2314	trunk/gtools/R/combinations.R,
	2315	trunk/gtools/R/running.R,
	2316	trunk/gtools/man/ELISA.Rd,
	2317	trunk/gtools/man/combinations.Rd:
	2318	Removed
	2319	executable
	2320	property
850	2321
851	2322	2006-11-10 23:51 ggorjan
852	2323
853		* [r1004] NAMESPACE, NEWS: just formatting
	2324	* [r1004]
	2325	NAMESPACE,
	2326	NEWS:
	2327	just
	2328	formatting
854	2329
855	2330	2006-11-02 15:08 ggorjan
856	2331
857		* [r1002] man/mapLevels.Rd, man/unknown.Rd: typos
	2332	* [r1002]
	2333	man/mapLevels.Rd,
	2334	man/unknown.Rd:
	2335	typos
858	2336
859	2337	2006-10-30 22:54 ggorjan
860	2338
861		* [r1001] man/write.fwf.Rd: some more examples for use of read.fwf
862		after write.fwf
	2339	* [r1001]
	2340	man/write.fwf.Rd:
	2341	some
	2342	more
	2343	examples
	2344	for
	2345	use
	2346	of
	2347	read.fwf
	2348	after
	2349	write.fwf
863	2350
864	2351	2006-10-30 22:34 ggorjan
865	2352
866		* [r1000] inst/unitTests: ignore for report files
	2353	* [r1000]
	2354	inst/unitTests:
	2355	ignore
	2356	for
	2357	report
	2358	files
867	2359
868	2360	2006-10-30 19:18 ggorjan
869	2361
870		* [r999] tests/tests.write.fwf.Rout.save: Id tag from source
	2362	* [r999]
	2363	tests/tests.write.fwf.Rout.save:
	2364	Id
	2365	tag
	2366	from
	2367	source
871	2368
872	2369	2006-10-30 19:07 ggorjan
873	2370
874		* [r998] NAMESPACE: removing unused import
	2371	* [r998]
	2372	NAMESPACE:
	2373	removing
	2374	unused
	2375	import
875	2376
876	2377	2006-10-30 19:04 ggorjan
877	2378
878		* [r997] R/write.fwf.R, inst/unitTests/runit.write.fwf.R,
879		man/write.fwf.Rd, tests/tests.write.fwf.R: Id tag
	2379	* [r997]
	2380	R/write.fwf.R,
	2381	inst/unitTests/runit.write.fwf.R,
	2382	man/write.fwf.Rd,
	2383	tests/tests.write.fwf.R:
	2384	Id
	2385	tag
880	2386
881	2387	2006-10-30 19:02 ggorjan
882	2388
883		* [r996] NAMESPACE, NEWS, R/write.fwf.R,
884		inst/unitTests/runit.write.fwf.R, man/write.fwf.Rd,
885		tests/tests.write.fwf.R, tests/tests.write.fwf.Rout.save:
	2389	* [r996]
	2390	NAMESPACE,
	2391	NEWS,
	2392	R/write.fwf.R,
	2393	inst/unitTests/runit.write.fwf.R,
	2394	man/write.fwf.Rd,
	2395	tests/tests.write.fwf.R,
	2396	tests/tests.write.fwf.Rout.save:
886	2397	write.fwf
887	2398
888	2399	2006-10-30 17:27 ggorjan
889	2400
890		* [r995] inst/unitTests/runit.reorder.factor.R: Id tag
	2401	* [r995]
	2402	inst/unitTests/runit.reorder.factor.R:
	2403	Id
	2404	tag
891	2405
892	2406	2006-10-30 17:26 ggorjan
893	2407
894		* [r994] inst/unitTests/runit.reorder.factor.R: added unit tests
895		for reorder.factor
	2408	* [r994]
	2409	inst/unitTests/runit.reorder.factor.R:
	2410	added
	2411	unit
	2412	tests
	2413	for
	2414	reorder.factor
896	2415
897	2416	2006-10-30 17:10 ggorjan
898	2417
899		* [r993] R/c.factor.R, R/mapLevels.R, R/unknown.R,
	2418	* [r993]
	2419	R/c.factor.R,
	2420	R/mapLevels.R,
	2421	R/unknown.R,
900	2422	inst/unitTests/runit.drop.levels.R,
901		inst/unitTests/runit.mapLevels.R, inst/unitTests/runit.trim.R,
902		inst/unitTests/runit.unknown.R, man/c.factor.Rd, man/unknown.Rd,
903		tests/doRUnit.R: mapply keeps names in R 2.4; POSIX unit tests
904		solved; $ should work now
	2423	inst/unitTests/runit.mapLevels.R,
	2424	inst/unitTests/runit.trim.R,
	2425	inst/unitTests/runit.unknown.R,
	2426	man/c.factor.Rd,
	2427	man/unknown.Rd,
	2428	tests/doRUnit.R:
	2429	mapply
	2430	keeps
	2431	names
	2432	in
	2433	R
	2434	2.4;
	2435	POSIX
	2436	unit
	2437	tests
	2438	solved;
	2439	$
	2440	should
	2441	work
	2442	now
905	2443
906	2444	2006-10-29 16:08 ggorjan
907	2445
908		* [r992] NEWS, R/unknown.R, inst/unitTests/runit.unknown.R,
909		man/unknown.Rd: fixed problem in tests; added unknown methods and
910		tests for matrices
	2446	* [r992]
	2447	NEWS,
	2448	R/unknown.R,
	2449	inst/unitTests/runit.unknown.R,
	2450	man/unknown.Rd:
	2451	fixed
	2452	problem
	2453	in
	2454	tests;
	2455	added
	2456	unknown
	2457	methods
	2458	and
	2459	tests
	2460	for
	2461	matrices
911	2462
912	2463	2006-10-29 15:47 ggorjan
913	2464
914		* [r991] R/drop.levels.R, R/mapLevels.R,
915		inst/unitTests/runit.mapLevels.R, man/mapLevels.Rd,
916		tests/doRUnit.R: sort is generic now; mapply keeps names in R
917		2.4.0; some codetools suggestions fixed
	2465	* [r991]
	2466	R/drop.levels.R,
	2467	R/mapLevels.R,
	2468	inst/unitTests/runit.mapLevels.R,
	2469	man/mapLevels.Rd,
	2470	tests/doRUnit.R:
	2471	sort
	2472	is
	2473	generic
	2474	now;
	2475	mapply
	2476	keeps
	2477	names
	2478	in
	2479	R
	2480	2.4.0;
	2481	some
	2482	codetools
	2483	suggestions
	2484	fixed
918	2485
919	2486	2006-10-29 15:34 ggorjan
920	2487
921		* [r990] DESCRIPTION, NAMESPACE: sort is generic from R 2.4.0
	2488	* [r990]
	2489	DESCRIPTION,
	2490	NAMESPACE:
	2491	sort
	2492	is
	2493	generic
	2494	from
	2495	R
	2496	2.4.0
922	2497
923	2498	2006-10-29 15:28 ggorjan
924	2499
925		* [r989] DESCRIPTION, NEWS, R/trim.R, man/trim.Rd: trim() gains ...
926		argument; version bump
	2500	* [r989]
	2501	DESCRIPTION,
	2502	NEWS,
	2503	R/trim.R,
	2504	man/trim.Rd:
	2505	trim()
	2506	gains
	2507	...
	2508	argument;
	2509	version
	2510	bump
927	2511
928	2512	2006-10-29 12:55 ggorjan
929	2513
930		* [r988] NEWS, R/reorder.R, man/reorder.Rd: Fixed collision bug
931		with stats version of reorder.factor
	2514	* [r988]
	2515	NEWS,
	2516	R/reorder.R,
	2517	man/reorder.Rd:
	2518	Fixed
	2519	collision
	2520	bug
	2521	with
	2522	stats
	2523	version
	2524	of
	2525	reorder.factor
932	2526
933	2527	2006-10-27 21:15 warnes
934	2528
935		* [r987] R/c.factor.R, man/c.factor.Rd: Add c() method for factor
936		objects, submitted by Gregor Gorjanc
	2529	* [r987]
	2530	R/c.factor.R,
	2531	man/c.factor.Rd:
	2532	Add
	2533	c()
	2534	method
	2535	for
	2536	factor
	2537	objects,
	2538	submitted
	2539	by
	2540	Gregor
	2541	Gorjanc
937	2542
938	2543	2006-09-19 21:08 warnes
939	2544
940		* [r986] NEWS: Update NEWS file for 2.3.0 release
	2545	* [r986]
	2546	NEWS:
	2547	Update
	2548	NEWS
	2549	file
	2550	for
	2551	2.3.0
	2552	release
941	2553
942	2554	2006-09-19 20:52 warnes
943	2555
944		* [r985] inst/unitTests/runit.trim.R: Explicitly set the local in
945		runit.trim.R to one where leading spaces affect sort order so
946		that the unit test works properly.
	2556	* [r985]
	2557	inst/unitTests/runit.trim.R:
	2558	Explicitly
	2559	set
	2560	the
	2561	local
	2562	in
	2563	runit.trim.R
	2564	to
	2565	one
	2566	where
	2567	leading
	2568	spaces
	2569	affect
	2570	sort
	2571	order
	2572	so
	2573	that
	2574	the
	2575	unit
	2576	test
	2577	works
	2578	properly.
947	2579
948	2580	2006-09-18 20:33 warnes
949	2581
950		* [r984] inst/doc/Rnews.sty: Update Rnews.sty to the latest version
	2582	* [r984]
	2583	inst/doc/Rnews.sty:
	2584	Update
	2585	Rnews.sty
	2586	to
	2587	the
	2588	latest
	2589	version
951	2590
952	2591	2006-09-18 20:24 warnes
953	2592
954		* [r983] R/trim.R, inst/unitTests/Makefile,
955		inst/unitTests/runit.trim.R, man/trim.Rd, tests/doRUnit.R:
956		Integrate fixes for trim() from Gregor and myself.
	2593	* [r983]
	2594	R/trim.R,
	2595	inst/unitTests/Makefile,
	2596	inst/unitTests/runit.trim.R,
	2597	man/trim.Rd,
	2598	tests/doRUnit.R:
	2599	Integrate
	2600	fixes
	2601	for
	2602	trim()
	2603	from
	2604	Gregor
	2605	and
	2606	myself.
957	2607
958	2608	2006-09-18 19:32 warnes
959	2609
960		* [r982] inst/unitTests/report.html, inst/unitTests/report.txt:
961		Remove unneeded files.
	2610	* [r982]
	2611	inst/unitTests/report.html,
	2612	inst/unitTests/report.txt:
	2613	Remove
	2614	unneeded
	2615	files.
962	2616
963	2617	2006-09-13 19:46 warnes
964	2618
965		* [r981] R/unknown.R, inst/unitTests, inst/unitTests/Makefile,
966		inst/unitTests/report.html, inst/unitTests/report.txt,
	2619	* [r981]
	2620	R/unknown.R,
	2621	inst/unitTests,
	2622	inst/unitTests/Makefile,
	2623	inst/unitTests/report.html,
	2624	inst/unitTests/report.txt,
967	2625	inst/unitTests/runit.drop.levels.R,
968		inst/unitTests/runit.mapLevels.R, inst/unitTests/runit.trim.R,
969		inst/unitTests/runit.unknown.R, man/unknown.Rd, tests,
970		tests/doRUnit.R: Add unknown() and unit test files
	2626	inst/unitTests/runit.mapLevels.R,
	2627	inst/unitTests/runit.trim.R,
	2628	inst/unitTests/runit.unknown.R,
	2629	man/unknown.Rd,
	2630	tests,
	2631	tests/doRUnit.R:
	2632	Add
	2633	unknown()
	2634	and
	2635	unit
	2636	test
	2637	files
971	2638
972	2639	2006-09-13 18:15 warnes
973	2640
974		* [r980] NAMESPACE, R/drop.levels.R, R/mapLevels.R, R/trim.R: More
975		fixes from Gregor Gorjanc
	2641	* [r980]
	2642	NAMESPACE,
	2643	R/drop.levels.R,
	2644	R/mapLevels.R,
	2645	R/trim.R:
	2646	More
	2647	fixes
	2648	from
	2649	Gregor
	2650	Gorjanc
976	2651
977	2652	2006-09-13 14:55 warnes
978	2653
979		* [r979] DESCRIPTION, NAMESPACE, R/combineLevels.R, R/mapFactor.R,
980		R/mapLevels.R, man/combineLevels.Rd, man/mapFactor.Rd,
981		man/mapLevels.Rd: Add mapLevels functions from Gregor Gorjanc,
982		along with associated unit tests.
	2654	* [r979]
	2655	DESCRIPTION,
	2656	NAMESPACE,
	2657	R/combineLevels.R,
	2658	R/mapFactor.R,
	2659	R/mapLevels.R,
	2660	man/combineLevels.Rd,
	2661	man/mapFactor.Rd,
	2662	man/mapLevels.Rd:
	2663	Add
	2664	mapLevels
	2665	functions
	2666	from
	2667	Gregor
	2668	Gorjanc,
	2669	along
	2670	with
	2671	associated
	2672	unit
	2673	tests.
983	2674
984	2675	2006-08-03 22:26 warnes
985	2676
986		* [r978] DESCRIPTION, NAMESPACE, R/combineLevels.R, R/mapFactor.R,
987		man/combineLevels.Rd, man/mapFactor.Rd: Add Gregor Gorjanc's
988		mapFactor() and combineLevels() functions.
	2677	* [r978]
	2678	DESCRIPTION,
	2679	NAMESPACE,
	2680	R/combineLevels.R,
	2681	R/mapFactor.R,
	2682	man/combineLevels.Rd,
	2683	man/mapFactor.Rd:
	2684	Add
	2685	Gregor
	2686	Gorjanc's
	2687	mapFactor()
	2688	and
	2689	combineLevels()
	2690	functions.
	2691
989	2692
990	2693	2006-08-02 22:21 warnes
991	2694
992		* [r977] trunk/BalloonPlotPaper/BalloonPlot.pdf,
	2695	* [r977]
	2696	trunk/BalloonPlotPaper/BalloonPlot.pdf,
993	2697	trunk/BalloonPlotPaper/BalloonPlot.tex,
994	2698	trunk/MSOfficeUtil/DESCRIPTION,
995	2699	trunk/PathwayModeling/thesispaper/slides.tex,
996		trunk/RMCMC/DESCRIPTION, trunk/RMCMC/man/make.density.Rd,
997		trunk/Rlsf/DESCRIPTION, trunk/Rlsf/man/lsf.numcpu.Rd,
998		trunk/Rlsf/man/lsf.parRapply.Rd, trunk/Rlsf/man/scat.Rd,
999		trunk/bwRF/DESCRIPTION, trunk/bwRF/man/RF.Rd,
	2700	trunk/RMCMC/DESCRIPTION,
	2701	trunk/RMCMC/man/make.density.Rd,
	2702	trunk/Rlsf/DESCRIPTION,
	2703	trunk/Rlsf/man/lsf.numcpu.Rd,
	2704	trunk/Rlsf/man/lsf.parRapply.Rd,
	2705	trunk/Rlsf/man/scat.Rd,
	2706	trunk/bwRF/DESCRIPTION,
	2707	trunk/bwRF/man/RF.Rd,
1000	2708	trunk/exp.ssize/inst/doc/ssize.pdf,
1001		trunk/exp.ssize/inst/doc/ssize.tex, trunk/fork/DESCRIPTION,
1002		trunk/fork/man/exit.Rd, trunk/fork/man/fork.Rd,
1003		trunk/fork/man/getpid.Rd, trunk/fork/man/kill.Rd,
1004		trunk/fork/man/signame.Rd, trunk/fork/man/wait.Rd,
1005		inst/doc/gregmisc.tex, man/ConvertMedUnits.Rd,
1006		man/aggregate.table.Rd, man/combine.Rd, man/interleave.Rd,
1007		man/matchcols.Rd, man/nobs.Rd, man/read.xls.Rd,
1008		man/rename.vars.Rd, man/reorder.Rd, man/trim.Rd, man/unmatrix.Rd,
1009		man/upperTriangle.Rd, trunk/gmodels/man/fast.prcomp.Rd,
1010		trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
	2709	trunk/exp.ssize/inst/doc/ssize.tex,
	2710	trunk/fork/DESCRIPTION,
	2711	trunk/fork/man/exit.Rd,
	2712	trunk/fork/man/fork.Rd,
	2713	trunk/fork/man/getpid.Rd,
	2714	trunk/fork/man/kill.Rd,
	2715	trunk/fork/man/signame.Rd,
	2716	trunk/fork/man/wait.Rd,
	2717	inst/doc/gregmisc.tex,
	2718	man/ConvertMedUnits.Rd,
	2719	man/aggregate.table.Rd,
	2720	man/combine.Rd,
	2721	man/interleave.Rd,
	2722	man/matchcols.Rd,
	2723	man/nobs.Rd,
	2724	man/read.xls.Rd,
	2725	man/rename.vars.Rd,
	2726	man/reorder.Rd,
	2727	man/trim.Rd,
	2728	man/unmatrix.Rd,
	2729	man/upperTriangle.Rd,
	2730	trunk/gmodels/man/fast.prcomp.Rd,
	2731	trunk/gmodels/man/fit.contrast.Rd,
	2732	trunk/gmodels/man/glh.test.Rd,
1011	2733	trunk/gmodels/man/make.contrasts.Rd,
1012	2734	trunk/gplots/inst/doc/BalloonPlot.pdf,
1013		trunk/gplots/man/balloonplot.Rd, trunk/gplots/man/bandplot.Rd,
1014		trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/colorpanel.Rd,
1015		trunk/gplots/man/hist2d.Rd, trunk/gplots/man/ooplot.Rd,
1016		trunk/gplots/man/overplot.Rd, trunk/gplots/man/plot.lm2.Rd,
1017		trunk/gplots/man/plotCI.Rd, trunk/gplots/man/plotmeans.Rd,
1018		trunk/gplots/man/residplot.Rd, trunk/gplots/man/sinkplot.Rd,
1019		trunk/gplots/man/smartlegend.Rd, trunk/gplots/man/space.Rd,
1020		trunk/gplots/man/textplot.Rd, trunk/gplots/man/wapply.Rd,
	2735	trunk/gplots/man/balloonplot.Rd,
	2736	trunk/gplots/man/bandplot.Rd,
	2737	trunk/gplots/man/boxplot.n.Rd,
	2738	trunk/gplots/man/colorpanel.Rd,
	2739	trunk/gplots/man/hist2d.Rd,
	2740	trunk/gplots/man/ooplot.Rd,
	2741	trunk/gplots/man/overplot.Rd,
	2742	trunk/gplots/man/plot.lm2.Rd,
	2743	trunk/gplots/man/plotCI.Rd,
	2744	trunk/gplots/man/plotmeans.Rd,
	2745	trunk/gplots/man/residplot.Rd,
	2746	trunk/gplots/man/sinkplot.Rd,
	2747	trunk/gplots/man/smartlegend.Rd,
	2748	trunk/gplots/man/space.Rd,
	2749	trunk/gplots/man/textplot.Rd,
	2750	trunk/gplots/man/wapply.Rd,
1021	2751	trunk/gregmisc/DESCRIPTION,
1022	2752	trunk/gregmisc/gregmisc/DESCRIPTION.standalone,
1023	2753	trunk/gregmisc/inst/doc/gregmisc.tex,
1024		trunk/gtools/man/addLast.Rd, trunk/gtools/man/assert.Rd,
1025		trunk/gtools/man/capture.Rd, trunk/gtools/man/combinations.Rd,
1026		trunk/gtools/man/defmacro.Rd, trunk/gtools/man/dirichlet.Rd,
1027		trunk/gtools/man/foldchange.Rd, trunk/gtools/man/invalid.Rd,
1028		trunk/gtools/man/logit.Rd, trunk/gtools/man/mixedsort.Rd,
1029		trunk/gtools/man/oddeven.Rd, trunk/gtools/man/permute.Rd,
1030		trunk/gtools/man/quantcut.Rd, trunk/gtools/man/running.Rd,
1031		trunk/gtools/man/scat.Rd, trunk/gtools/man/setTCPNoDelay.Rd,
1032		trunk/nws/DESCRIPTION, trunk/qvalue/DESCRIPTION,
1033		trunk/qvalue/man/print.qvalue.Rd, trunk/ssize/DESCRIPTION,
1034		trunk/ssize/man/pow.Rd: Update my email address
	2754	trunk/gtools/man/addLast.Rd,
	2755	trunk/gtools/man/assert.Rd,
	2756	trunk/gtools/man/capture.Rd,
	2757	trunk/gtools/man/combinations.Rd,
	2758	trunk/gtools/man/defmacro.Rd,
	2759	trunk/gtools/man/dirichlet.Rd,
	2760	trunk/gtools/man/foldchange.Rd,
	2761	trunk/gtools/man/invalid.Rd,
	2762	trunk/gtools/man/logit.Rd,
	2763	trunk/gtools/man/mixedsort.Rd,
	2764	trunk/gtools/man/oddeven.Rd,
	2765	trunk/gtools/man/permute.Rd,
	2766	trunk/gtools/man/quantcut.Rd,
	2767	trunk/gtools/man/running.Rd,
	2768	trunk/gtools/man/scat.Rd,
	2769	trunk/gtools/man/setTCPNoDelay.Rd,
	2770	trunk/nws/DESCRIPTION,
	2771	trunk/qvalue/DESCRIPTION,
	2772	trunk/qvalue/man/print.qvalue.Rd,
	2773	trunk/ssize/DESCRIPTION,
	2774	trunk/ssize/man/pow.Rd:
	2775	Update
	2776	my
	2777	email
	2778	address
1035	2779
1036	2780	2006-08-02 21:03 warnes
1037	2781
1038		* [r976] data/MedUnits.rda: Remove MedUnits.rda to convert to
1039		binary format
	2782	* [r976]
	2783	data/MedUnits.rda:
	2784	Remove
	2785	MedUnits.rda
	2786	to
	2787	convert
	2788	to
	2789	binary
	2790	format
1040	2791
1041	2792	2006-08-02 21:03 warnes
1042	2793
1043		* [r975] data/MedUnits.rda: Remove MedUnits.rda to convert to
1044		binary format
	2794	* [r975]
	2795	data/MedUnits.rda:
	2796	Remove
	2797	MedUnits.rda
	2798	to
	2799	convert
	2800	to
	2801	binary
	2802	format
1045	2803
1046	2804	2006-08-02 19:06 warnes
1047	2805
1048		* [r974] DESCRIPTION: Update version number
	2806	* [r974]
	2807	DESCRIPTION:
	2808	Update
	2809	version
	2810	number
1049	2811
1050	2812	2006-08-02 19:04 warnes
1051	2813
1052		* [r973] NAMESPACE, R/drop.levels.R, R/trim.R, man/drop.levels.Rd,
1053		man/trim.Rd: Integrate changes suggested by Gregor Gorjanc
	2814	* [r973]
	2815	NAMESPACE,
	2816	R/drop.levels.R,
	2817	R/trim.R,
	2818	man/drop.levels.Rd,
	2819	man/trim.Rd:
	2820	Integrate
	2821	changes
	2822	suggested
	2823	by
	2824	Gregor
	2825	Gorjanc
1054	2826
1055	2827	2006-03-14 18:00 nj7w
1056	2828
1057		* [r940] NAMESPACE, R/trim.R, man/resample.Rd: Fixed R CMD check
1058		errors and added trim.default to NAMESPACE
	2829	* [r940]
	2830	NAMESPACE,
	2831	R/trim.R,
	2832	man/resample.Rd:
	2833	Fixed
	2834	R
	2835	CMD
	2836	check
	2837	errors
	2838	and
	2839	added
	2840	trim.default
	2841	to
	2842	NAMESPACE
1059	2843
1060	2844	2006-03-13 19:50 nj7w
1061	2845
1062		* [r939] R/trim.R: Added trim.character and trim.factor as per
1063		Gregor's suggestions
	2846	* [r939]
	2847	R/trim.R:
	2848	Added
	2849	trim.character
	2850	and
	2851	trim.factor
	2852	as
	2853	per
	2854	Gregor's
	2855	suggestions
1064	2856
1065	2857	2006-01-03 20:20 warnes
1066	2858
1067		* [r839] NAMESPACE, R/resample.R, man/resample.Rd: Add resample()
1068		function, which generates a random sample or
1069		permutation from the elements of the supplied vector, even if the
1070		vector has length 1. This avoide the problems caused by
1071		base::sample()'s special case for vectors of length 1, where it
1072		attempts to sample from 1:x.
	2859	* [r839]
	2860	NAMESPACE,
	2861	R/resample.R,
	2862	man/resample.Rd:
	2863	Add
	2864	resample()
	2865	function,
	2866	which
	2867	generates
	2868	a
	2869	random
	2870	sample
	2871	or permutation
	2872	from
	2873	the
	2874	elements
	2875	of
	2876	the
	2877	supplied
	2878	vector,
	2879	even
	2880	if
	2881	the vector
	2882	has
	2883	length
	2884	1.
	2885
	2886	This
	2887	avoide
	2888	the
	2889	problems
	2890	caused
	2891	by base::sample()'s
	2892	special
	2893	case
	2894	for
	2895	vectors
	2896	of
	2897	length
	2898	1,
	2899	where
	2900	it attempts
	2901	to
	2902	sample
	2903	from
	2904	1:x.
1073	2905
1074	2906	2005-12-13 15:56 nj7w
1075	2907
1076		* [r806] ChangeLog, NEWS: Updated news and removed changelog
	2908	* [r806]
	2909	ChangeLog,
	2910	NEWS:
	2911	Updated
	2912	news
	2913	and
	2914	removed
	2915	changelog
1077	2916
1078	2917	2005-12-12 22:02 nj7w
1079	2918
1080		* [r798] DESCRIPTION, man/interleave.Rd: Updated version number for
1081		CRAN release
	2919	* [r798]
	2920	DESCRIPTION,
	2921	man/interleave.Rd:
	2922	Updated
	2923	version
	2924	number
	2925	for
	2926	CRAN
	2927	release
1082	2928
1083	2929	2005-12-08 20:18 warnes
1084	2930
1085		* [r789] R/interleave.R: Andrew Burgess reported that interleave()
1086		converts 1-column matrixes
1087		to vectors and provided a patch. A slight modification of his
1088		patch
1089		has been applied. There is now a 'drop' argument, which controls
1090		whether 'unnecessary' dimensions are dropped. The default is
	2931	* [r789]
	2932	R/interleave.R:
	2933	Andrew
	2934	Burgess
	2935	reported
	2936	that
	2937	interleave()
	2938	converts
	2939	1-column
	2940	matrixes to
	2941	vectors
	2942	and
	2943	provided
	2944	a
	2945	patch.
	2946
	2947	A
	2948	slight
	2949	modification
	2950	of
	2951	his
	2952	patch has
	2953	been
	2954	applied.
	2955
	2956	There
	2957	is
	2958	now
	2959	a
	2960	'drop'
	2961	argument,
	2962	which
	2963	controls whether
	2964	'unnecessary'
	2965	dimensions
	2966	are
	2967	dropped.
	2968
	2969	The
	2970	default
	2971	is
1091	2972	FALSE.
1092	2973
1093	2974	2005-12-04 03:02 warnes
1094	2975
1095		* [r779] man/interleave.Rd: Andrew Burgess reported that
1096		interleave() converts 1-column matrixes
1097		to vectors and provided a patch. A slight modification of his
1098		patch
1099		has been applied. There is now a 'drop' argument, which controls
1100		whether 'unnecessary' dimensions are dropped. The default is
	2976	* [r779]
	2977	man/interleave.Rd:
	2978	Andrew
	2979	Burgess
	2980	reported
	2981	that
	2982	interleave()
	2983	converts
	2984	1-column
	2985	matrixes to
	2986	vectors
	2987	and
	2988	provided
	2989	a
	2990	patch.
	2991
	2992	A
	2993	slight
	2994	modification
	2995	of
	2996	his
	2997	patch has
	2998	been
	2999	applied.
	3000
	3001	There
	3002	is
	3003	now
	3004	a
	3005	'drop'
	3006	argument,
	3007	which
	3008	controls whether
	3009	'unnecessary'
	3010	dimensions
	3011	are
	3012	dropped.
	3013
	3014	The
	3015	default
	3016	is
1101	3017	FALSE.
1102	3018
1103	3019	2005-12-01 16:41 nj7w
1104	3020
1105		* [r775] man/combine.Rd, man/reorder.Rd: Updated Greg's email
	3021	* [r775]
	3022	man/combine.Rd,
	3023	man/reorder.Rd:
	3024	Updated
	3025	Greg's
	3026	email
1106	3027	address
1107	3028
1108	3029	2005-12-01 16:39 nj7w
1109	3030
1110		* [r774] man/drop.levels.Rd, man/frameApply.Rd, man/ll.Rd,
1111		man/read.xls.Rd: Updated Jim's email address
	3031	* [r774]
	3032	man/drop.levels.Rd,
	3033	man/frameApply.Rd,
	3034	man/ll.Rd,
	3035	man/read.xls.Rd:
	3036	Updated
	3037	Jim's
	3038	email
	3039	address
1112	3040
1113	3041	2005-11-21 18:20 arnima
1114	3042
1115		* [r744] R/ll.R: Suppressed warning message in attach() call.
	3043	* [r744]
	3044	R/ll.R:
	3045	Suppressed
	3046	warning
	3047	message
	3048	in
	3049	attach()
	3050	call.
1116	3051
1117	3052	2005-10-27 18:41 warnes
1118	3053
1119		* [r716] DESCRIPTION: Bump version number again to show that I
1120		fixed a bug.
	3054	* [r716]
	3055	DESCRIPTION:
	3056	Bump
	3057	version
	3058	number
	3059	again
	3060	to
	3061	show
	3062	that
	3063	I
	3064	fixed
	3065	a
	3066	bug.
1121	3067
1122	3068	2005-10-27 18:19 warnes
1123	3069
1124		* [r715] DESCRIPTION, R/upperTriangle.R: Update version number
	3070	* [r715]
	3071	DESCRIPTION,
	3072	R/upperTriangle.R:
	3073	Update
	3074	version
	3075	number
1125	3076
1126	3077	2005-10-27 18:19 warnes
1127	3078
1128		* [r714] man/frameApply.Rd, man/reorder.Rd: Remove explicit loading
1129		of gtools in examples, so that failure to
1130		import functions from gtools gets properly caught by running the
	3079	* [r714]
	3080	man/frameApply.Rd,
	3081	man/reorder.Rd:
	3082	Remove
	3083	explicit
	3084	loading
	3085	of
	3086	gtools
	3087	in
	3088	examples,
	3089	so
	3090	that
	3091	failure
	3092	to import
	3093	functions
	3094	from
	3095	gtools
	3096	gets
	3097	properly
	3098	caught
	3099	by
	3100	running
	3101	the
1131	3102	examples.
1132	3103
1133	3104	2005-10-27 18:18 warnes
1134	3105
1135		* [r713] man/upperTriangle.Rd: Add missing close-bracket
	3106	* [r713]
	3107	man/upperTriangle.Rd:
	3108	Add
	3109	missing
	3110	close-bracket
1136	3111
1137	3112	2005-10-27 18:17 warnes
1138	3113
1139		* [r712] NAMESPACE: Add upperTriangle and friends
	3114	* [r712]
	3115	NAMESPACE:
	3116	Add
	3117	upperTriangle
	3118	and
	3119	friends
1140	3120
1141	3121	2005-10-27 12:59 warnes
1142	3122
1143		* [r711] R/upperTriangle.R, man/upperTriangle.Rd: Add functions for
1144		extracting, modifying upper and lower trianglular
1145		components of matrices.
	3123	* [r711]
	3124	R/upperTriangle.R,
	3125	man/upperTriangle.Rd:
	3126	Add
	3127	functions
	3128	for
	3129	extracting,
	3130	modifying
	3131	upper
	3132	and
	3133	lower
	3134	trianglular components
	3135	of
	3136	matrices.
1146	3137
1147	3138	2005-10-19 16:36 arnima
1148	3139
1149		* [r695] R/is.what.R: Replaced the "not.using" vector with a more
1150		robust try(get(test)) to find out whether a particular is.*
1151		function returns a logical of length one.
	3140	* [r695]
	3141	R/is.what.R:
	3142	Replaced
	3143	the
	3144	"not.using"
	3145	vector
	3146	with
	3147	a
	3148	more
	3149	robust
	3150	try(get(test))
	3151	to
	3152	find
	3153	out
	3154	whether
	3155	a
	3156	particular
	3157	is.*
	3158	function
	3159	returns
	3160	a
	3161	logical
	3162	of
	3163	length
	3164	one.
1152	3165
1153	3166	2005-09-12 15:44 nj7w
1154	3167
1155		* [r671] man/aggregate.table.Rd, man/interleave.Rd,
1156		man/matchcols.Rd, man/nobs.Rd, man/read.xls.Rd,
1157		man/rename.vars.Rd, man/trim.Rd, man/unmatrix.Rd,
1158		trunk/gmodels/man/fast.prcomp.Rd, trunk/gmodels/man/glh.test.Rd,
1159		trunk/gplots/man/hist2d.Rd, trunk/gplots/man/ooplot.Rd,
1160		trunk/gplots/man/residplot.Rd, trunk/gplots/man/sinkplot.Rd,
1161		trunk/gplots/man/smartlegend.Rd, trunk/gplots/man/space.Rd,
1162		trunk/gtools/man/assert.Rd, trunk/gtools/man/dirichlet.Rd,
1163		trunk/gtools/man/permute.Rd, trunk/gtools/man/scat.Rd: Updated
1164		Greg's email
	3168	* [r671]
	3169	man/aggregate.table.Rd,
	3170	man/interleave.Rd,
	3171	man/matchcols.Rd,
	3172	man/nobs.Rd,
	3173	man/read.xls.Rd,
	3174	man/rename.vars.Rd,
	3175	man/trim.Rd,
	3176	man/unmatrix.Rd,
	3177	trunk/gmodels/man/fast.prcomp.Rd,
	3178	trunk/gmodels/man/glh.test.Rd,
	3179	trunk/gplots/man/hist2d.Rd,
	3180	trunk/gplots/man/ooplot.Rd,
	3181	trunk/gplots/man/residplot.Rd,
	3182	trunk/gplots/man/sinkplot.Rd,
	3183	trunk/gplots/man/smartlegend.Rd,
	3184	trunk/gplots/man/space.Rd,
	3185	trunk/gtools/man/assert.Rd,
	3186	trunk/gtools/man/dirichlet.Rd,
	3187	trunk/gtools/man/permute.Rd,
	3188	trunk/gtools/man/scat.Rd:
	3189	Updated
	3190	Greg's
	3191	email
1165	3192
1166	3193	2005-09-06 15:43 nj7w
1167	3194
1168		* [r661] man/reorder.Rd: Added library(gtools) in the example
	3195	* [r661]
	3196	man/reorder.Rd:
	3197	Added
	3198	library(gtools)
	3199	in
	3200	the
	3201	example
1169	3202
1170	3203	2005-09-06 15:41 nj7w
1171	3204
1172		* [r660] NAMESPACE: Removed gtools dependency from NAMESPACE, as it
1173		was being used only in an example, and was giving warning
	3205	* [r660]
	3206	NAMESPACE:
	3207	Removed
	3208	gtools
	3209	dependency
	3210	from
	3211	NAMESPACE,
	3212	as
	3213	it
	3214	was
	3215	being
	3216	used
	3217	only
	3218	in
	3219	an
	3220	example,
	3221	and
	3222	was
	3223	giving
	3224	warning
1174	3225
1175	3226	2005-09-06 15:39 nj7w
1176	3227
1177		* [r659] DESCRIPTION: Added Suggests field
	3228	* [r659]
	3229	DESCRIPTION:
	3230	Added
	3231	Suggests
	3232	field
1178	3233
1179	3234	2005-09-02 23:23 nj7w
1180	3235
1181		* [r658] man/frameApply.Rd: Updated the example in frameApply
	3236	* [r658]
	3237	man/frameApply.Rd:
	3238	Updated
	3239	the
	3240	example
	3241	in
	3242	frameApply
1182	3243
1183	3244	2005-09-02 23:14 nj7w
1184	3245
1185		* [r656] NEWS: Added NEWS
	3246	* [r656]
	3247	NEWS:
	3248	Added
	3249	NEWS
1186	3250
1187	3251	2005-09-02 23:00 nj7w
1188	3252
1189		* [r654] ChangeLog: ChangeLog
	3253	* [r654]
	3254	ChangeLog:
	3255	ChangeLog
1190	3256
1191	3257	2005-08-31 16:28 nj7w
1192	3258
1193		* [r644] DESCRIPTION, trunk/gmodels/DESCRIPTION,
1194		trunk/gplots/DESCRIPTION: Added DESCRIPTION file
	3259	* [r644]
	3260	DESCRIPTION,
	3261	trunk/gmodels/DESCRIPTION,
	3262	trunk/gplots/DESCRIPTION:
	3263	Added
	3264	DESCRIPTION
	3265	file
1195	3266
1196	3267	2005-08-31 16:27 nj7w
1197	3268
1198		* [r643] DESCRIPTION.in, trunk/gmodels/DESCRIPTION.in,
1199		trunk/gplots/DESCRIPTION.in: removed DESCRIPTION.in
	3269	* [r643]
	3270	DESCRIPTION.in,
	3271	trunk/gmodels/DESCRIPTION.in,
	3272	trunk/gplots/DESCRIPTION.in:
	3273	removed
	3274	DESCRIPTION.in
1200	3275
1201	3276	2005-07-20 21:06 nj7w
1202	3277
1203		* [r631] man/ll.Rd: updated documentation
	3278	* [r631]
	3279	man/ll.Rd:
	3280	updated
	3281	documentation
1204	3282
1205	3283	2005-07-20 21:05 nj7w
1206	3284
1207		* [r630] R/Args.R: ## Args() was using a different search path from
1208		args(), e.g.
1209		rep <- function(local) return(NULL)
1210		args()
	3285	* [r630]
	3286	R/Args.R:
	3287	##
1211	3288	Args()
1212		## Fixed
	3289	was
	3290	using
	3291	a
	3292	different
	3293	search
	3294	path
	3295	from
	3296	args(),
	3297	e.g. rep
	3298	<-
	3299	function(local)
	3300	return(NULL) args() Args() ##
	3301	Fixed
1213	3302
1214	3303	2005-07-20 21:05 nj7w
1215	3304
1216		* [r629] R/is.what.R: ## is.what() was giving needless warnings for
1217		functions, e.g.
1218		is.what(plot)
1219		## Fixed
	3305	* [r629]
	3306	R/is.what.R:
	3307	##
	3308	is.what()
	3309	was
	3310	giving
	3311	needless
	3312	warnings
	3313	for
	3314	functions,
	3315	e.g. is.what(plot) ##
	3316	Fixed
1220	3317
1221	3318	2005-07-20 21:04 nj7w
1222	3319
1223		* [r628] R/ll.R: ## ll() was crashing if argument was a list of
1224		length zero, e.g.
1225		x <- list()
1226		ll(x)
1227		## Fixed, and added sort.elements (see new help page)
	3320	* [r628]
	3321	R/ll.R:
	3322	##
	3323	ll()
	3324	was
	3325	crashing
	3326	if
	3327	argument
	3328	was
	3329	a
	3330	list
	3331	of
	3332	length
	3333	zero,
	3334	e.g. x
	3335	<-
	3336	list() ll(x) ##
	3337	Fixed,
	3338	and
	3339	added
	3340	sort.elements
	3341	(see
	3342	new
	3343	help
	3344	page)
1228	3345
1229	3346	2005-06-09 14:20 nj7w
1230	3347
1231		* [r625] R/Args.R, R/aggregate.table.R, R/combine.R, R/elem.R,
1232		R/env.R, R/frameApply.R, R/interleave.R, R/is.what.R, R/keep.R,
1233		R/ll.R, R/matchcols.R, R/nobs.R, R/read.xls.R, R/rename.vars.R,
1234		R/reorder.R, R/trim.R, R/unmatrix.R, inst/perl/IO/AtomicFile.pm,
1235		inst/perl/IO/InnerFile.pm, inst/perl/IO/Lines.pm,
1236		inst/perl/IO/Scalar.pm, inst/perl/IO/Scalar.pm.html,
1237		inst/perl/IO/ScalarArray.pm, inst/perl/IO/Stringy.pm,
1238		inst/perl/IO/Wrap.pm, inst/perl/IO/WrapTie.pm,
1239		man/aggregate.table.Rd, man/combine.Rd, man/drop.levels.Rd,
1240		man/interleave.Rd, man/nobs.Rd, man/rename.vars.Rd,
1241		man/reorder.Rd, trunk/gmodels/R/ci.R,
1242		trunk/gmodels/R/coefFrame.R, trunk/gmodels/R/estimable.R,
1243		trunk/gmodels/R/fast.prcomp.R, trunk/gmodels/R/fit.contrast.R,
1244		trunk/gmodels/R/glh.test.R, trunk/gmodels/R/make.contrasts.R,
1245		trunk/gmodels/man/CrossTable.Rd, trunk/gmodels/man/ci.Rd,
1246		trunk/gmodels/man/coefFrame.Rd, trunk/gmodels/man/estimable.Rd,
	3348	* [r625]
	3349	R/Args.R,
	3350	R/aggregate.table.R,
	3351	R/combine.R,
	3352	R/elem.R,
	3353	R/env.R,
	3354	R/frameApply.R,
	3355	R/interleave.R,
	3356	R/is.what.R,
	3357	R/keep.R,
	3358	R/ll.R,
	3359	R/matchcols.R,
	3360	R/nobs.R,
	3361	R/read.xls.R,
	3362	R/rename.vars.R,
	3363	R/reorder.R,
	3364	R/trim.R,
	3365	R/unmatrix.R,
	3366	inst/perl/IO/AtomicFile.pm,
	3367	inst/perl/IO/InnerFile.pm,
	3368	inst/perl/IO/Lines.pm,
	3369	inst/perl/IO/Scalar.pm,
	3370	inst/perl/IO/Scalar.pm.html,
	3371	inst/perl/IO/ScalarArray.pm,
	3372	inst/perl/IO/Stringy.pm,
	3373	inst/perl/IO/Wrap.pm,
	3374	inst/perl/IO/WrapTie.pm,
	3375	man/aggregate.table.Rd,
	3376	man/combine.Rd,
	3377	man/drop.levels.Rd,
	3378	man/interleave.Rd,
	3379	man/nobs.Rd,
	3380	man/rename.vars.Rd,
	3381	man/reorder.Rd,
	3382	trunk/gmodels/R/ci.R,
	3383	trunk/gmodels/R/coefFrame.R,
	3384	trunk/gmodels/R/estimable.R,
	3385	trunk/gmodels/R/fast.prcomp.R,
	3386	trunk/gmodels/R/fit.contrast.R,
	3387	trunk/gmodels/R/glh.test.R,
	3388	trunk/gmodels/R/make.contrasts.R,
	3389	trunk/gmodels/man/CrossTable.Rd,
	3390	trunk/gmodels/man/ci.Rd,
	3391	trunk/gmodels/man/coefFrame.Rd,
	3392	trunk/gmodels/man/estimable.Rd,
1247	3393	trunk/gmodels/man/fast.prcomp.Rd,
1248		trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
	3394	trunk/gmodels/man/fit.contrast.Rd,
	3395	trunk/gmodels/man/glh.test.Rd,
1249	3396	trunk/gmodels/man/make.contrasts.Rd,
1250		trunk/gplots/R/balloonplot.R, trunk/gplots/R/bandplot.R,
1251		trunk/gplots/R/boxplot.n.R, trunk/gplots/R/colorpanel.R,
1252		trunk/gplots/R/heatmap.2.R, trunk/gplots/R/hist2d.R,
1253		trunk/gplots/R/lowess.R, trunk/gplots/R/ooplot.R,
1254		trunk/gplots/R/overplot.R, trunk/gplots/R/plotCI.R,
1255		trunk/gplots/R/plotmeans.R, trunk/gplots/R/qqnorm.aov.R,
1256		trunk/gplots/R/residplot.R, trunk/gplots/R/rich.color.R,
1257		trunk/gplots/R/sinkplot.R, trunk/gplots/R/smartlegend.R,
1258		trunk/gplots/R/space.R, trunk/gplots/R/textplot.R,
1259		trunk/gplots/R/wapply.R, trunk/gplots/man/1,
1260		trunk/gplots/man/bandplot.Rd, trunk/gplots/man/barplot2.Rd,
1261		trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/hist2d.Rd,
1262		trunk/gplots/man/lowess.Rd, trunk/gplots/man/plotCI.Rd,
1263		trunk/gplots/man/plotmeans.Rd, trunk/gplots/man/residplot.Rd,
1264		trunk/gplots/man/space.Rd, trunk/gplots/man/wapply.Rd,
1265		trunk/gtools/R/RSCompat.S, trunk/gtools/R/combinations.R,
1266		trunk/gtools/R/dirichlet.R, trunk/gtools/R/foldchange.R,
1267		trunk/gtools/R/invalid.R, trunk/gtools/R/logit.R,
1268		trunk/gtools/R/mixedsort.R, trunk/gtools/R/oddeven.R,
1269		trunk/gtools/R/permute.R, trunk/gtools/R/quantcut.R,
1270		trunk/gtools/R/running.R, trunk/gtools/R/scat.R,
1271		trunk/gtools/man/ELISA.Rd, trunk/gtools/man/combinations.Rd,
1272		trunk/gtools/man/dirichlet.Rd, trunk/gtools/man/foldchange.Rd,
1273		trunk/gtools/man/invalid.Rd, trunk/gtools/man/logit.Rd,
1274		trunk/gtools/man/mixedsort.Rd, trunk/gtools/man/oddeven.Rd,
1275		trunk/gtools/man/permute.Rd, trunk/gtools/man/quantcut.Rd,
1276		trunk/gtools/man/running.Rd, trunk/gtools/man/scat.Rd: Updating
1277		the version number, and various help files to synchronize
1278		splitting of gregmisc bundle in 4 individual components.
	3397	trunk/gplots/R/balloonplot.R,
	3398	trunk/gplots/R/bandplot.R,
	3399	trunk/gplots/R/boxplot.n.R,
	3400	trunk/gplots/R/colorpanel.R,
	3401	trunk/gplots/R/heatmap.2.R,
	3402	trunk/gplots/R/hist2d.R,
	3403	trunk/gplots/R/lowess.R,
	3404	trunk/gplots/R/ooplot.R,
	3405	trunk/gplots/R/overplot.R,
	3406	trunk/gplots/R/plotCI.R,
	3407	trunk/gplots/R/plotmeans.R,
	3408	trunk/gplots/R/qqnorm.aov.R,
	3409	trunk/gplots/R/residplot.R,
	3410	trunk/gplots/R/rich.color.R,
	3411	trunk/gplots/R/sinkplot.R,
	3412	trunk/gplots/R/smartlegend.R,
	3413	trunk/gplots/R/space.R,
	3414	trunk/gplots/R/textplot.R,
	3415	trunk/gplots/R/wapply.R,
	3416	trunk/gplots/man/1,
	3417	trunk/gplots/man/bandplot.Rd,
	3418	trunk/gplots/man/barplot2.Rd,
	3419	trunk/gplots/man/boxplot.n.Rd,
	3420	trunk/gplots/man/hist2d.Rd,
	3421	trunk/gplots/man/lowess.Rd,
	3422	trunk/gplots/man/plotCI.Rd,
	3423	trunk/gplots/man/plotmeans.Rd,
	3424	trunk/gplots/man/residplot.Rd,
	3425	trunk/gplots/man/space.Rd,
	3426	trunk/gplots/man/wapply.Rd,
	3427	trunk/gtools/R/RSCompat.S,
	3428	trunk/gtools/R/combinations.R,
	3429	trunk/gtools/R/dirichlet.R,
	3430	trunk/gtools/R/foldchange.R,
	3431	trunk/gtools/R/invalid.R,
	3432	trunk/gtools/R/logit.R,
	3433	trunk/gtools/R/mixedsort.R,
	3434	trunk/gtools/R/oddeven.R,
	3435	trunk/gtools/R/permute.R,
	3436	trunk/gtools/R/quantcut.R,
	3437	trunk/gtools/R/running.R,
	3438	trunk/gtools/R/scat.R,
	3439	trunk/gtools/man/ELISA.Rd,
	3440	trunk/gtools/man/combinations.Rd,
	3441	trunk/gtools/man/dirichlet.Rd,
	3442	trunk/gtools/man/foldchange.Rd,
	3443	trunk/gtools/man/invalid.Rd,
	3444	trunk/gtools/man/logit.Rd,
	3445	trunk/gtools/man/mixedsort.Rd,
	3446	trunk/gtools/man/oddeven.Rd,
	3447	trunk/gtools/man/permute.Rd,
	3448	trunk/gtools/man/quantcut.Rd,
	3449	trunk/gtools/man/running.Rd,
	3450	trunk/gtools/man/scat.Rd:
	3451	Updating
	3452	the
	3453	version
	3454	number,
	3455	and
	3456	various
	3457	help
	3458	files
	3459	to
	3460	synchronize
	3461	splitting
	3462	of
	3463	gregmisc
	3464	bundle
	3465	in
	3466	4
	3467	individual
	3468	components.
1279	3469
1280	3470	2005-06-07 19:51 nj7w
1281	3471
1282		* [r622] R/drop.levels.R: Reverting to the previous version of
1283		drop.levels.R by replacing
1284		sapply(...) with as.data.frame(lapply(...)) because sapply has
1285		the undesirable effect of converting the object to a matrix,
1286		which in turn coerces the factors to numeric.
	3472	* [r622]
	3473	R/drop.levels.R:
	3474	Reverting
	3475	to
	3476	the
	3477	previous
	3478	version
	3479	of
	3480	drop.levels.R
	3481	by
	3482	replacing sapply(...)
	3483	with
	3484	as.data.frame(lapply(...))
	3485	because
	3486	sapply
	3487	has
	3488	the
	3489	undesirable
	3490	effect
	3491	of
	3492	converting
	3493	the
	3494	object
	3495	to
	3496	a
	3497	matrix, which
	3498	in
	3499	turn
	3500	coerces
	3501	the
	3502	factors
	3503	to
	3504	numeric.
1287	3505
1288	3506	2005-05-13 18:59 nj7w
1289	3507
1290		* [r621] R/read.xls.R, trunk/gmodels/man/CrossTable.Rd,
1291		trunk/gplots/man/heatmap.2.Rd: 1) Using dQuote.ascii function in
1292		read.xls as the new version of dQuote doesn't work proprly with
1293		UTF-8 locale.
1294		2) Modified CrossTable.Rd usage in gmodels
1295		3) Modified heatmap.2 usage in gplots.
	3508	* [r621]
	3509	R/read.xls.R,
	3510	trunk/gmodels/man/CrossTable.Rd,
	3511	trunk/gplots/man/heatmap.2.Rd:
	3512	1)
	3513	Using
	3514	dQuote.ascii
	3515	function
	3516	in
	3517	read.xls
	3518	as
	3519	the
	3520	new
	3521	version
	3522	of
	3523	dQuote
	3524	doesn't
	3525	work
	3526	proprly
	3527	with
	3528	UTF-8
	3529	locale. 2)
	3530	Modified
	3531	CrossTable.Rd
	3532	usage
	3533	in
	3534	gmodels 3)
	3535	Modified
	3536	heatmap.2
	3537	usage
	3538	in
	3539	gplots.
1296	3540
1297	3541	2005-04-02 04:19 warnes
1298	3542
1299		* [r600] NAMESPACE, R/drop.levels.R, man/drop.levels.Rd,
1300		trunk/gtools/NAMESPACE, trunk/gtools/R/drop.levels.R,
1301		trunk/gtools/man/drop.levels.Rd: Move drop.levels() from gtools
1302		to gdata.
	3543	* [r600]
	3544	NAMESPACE,
	3545	R/drop.levels.R,
	3546	man/drop.levels.Rd,
	3547	trunk/gtools/NAMESPACE,
	3548	trunk/gtools/R/drop.levels.R,
	3549	trunk/gtools/man/drop.levels.Rd:
	3550	Move
	3551	drop.levels()
	3552	from
	3553	gtools
	3554	to
	3555	gdata.
1303	3556
1304	3557	2005-04-02 04:14 warnes
1305	3558
1306		* [r598] NAMESPACE, R/frameApply.R, man/frameApply.Rd,
1307		trunk/gtools/NAMESPACE, trunk/gtools/R/frameApply.R,
1308		trunk/gtools/man/frameApply.Rd: Move frameApply() to gdata
	3559	* [r598]
	3560	NAMESPACE,
	3561	R/frameApply.R,
	3562	man/frameApply.Rd,
	3563	trunk/gtools/NAMESPACE,
	3564	trunk/gtools/R/frameApply.R,
	3565	trunk/gtools/man/frameApply.Rd:
	3566	Move
	3567	frameApply()
	3568	to
	3569	gdata
1309	3570	package.
1310	3571
1311	3572	2005-03-31 18:11 warnes
1312	3573
1313		* [r586] man/elem.Rd: Comment out example to avoid R CMD check
	3574	* [r586]
	3575	man/elem.Rd:
	3576	Comment
	3577	out
	3578	example
	3579	to
	3580	avoid
	3581	R
	3582	CMD
	3583	check
1314	3584	warnings
1315	3585
1316	3586	2005-03-22 06:16 warnes
1317	3587
1318		* [r578] NAMESPACE, R/ConvertMedUnits.R, data/MedUnits.Rda,
1319		data/MedUnits.rda, man/ConvertMedUnits.Rd, man/MedUnits.Rd,
1320		trunk/gregmisc/DESCRIPTION, trunk/gregmisc/NEWS: Fixes to pass `R
1321		CMD check'.
	3588	* [r578]
	3589	NAMESPACE,
	3590	R/ConvertMedUnits.R,
	3591	data/MedUnits.Rda,
	3592	data/MedUnits.rda,
	3593	man/ConvertMedUnits.Rd,
	3594	man/MedUnits.Rd,
	3595	trunk/gregmisc/DESCRIPTION,
	3596	trunk/gregmisc/NEWS:
	3597	Fixes
	3598	to
	3599	pass
	3600	`R
	3601	CMD
	3602	check'.
1322	3603
1323	3604	2005-03-22 02:51 warnes
1324	3605
1325		* [r577] R/Args.R, R/env.R, R/ll.R, man/Args.Rd: Integrated fixes
1326		from Arni.
	3606	* [r577]
	3607	R/Args.R,
	3608	R/env.R,
	3609	R/ll.R,
	3610	man/Args.Rd:
	3611	Integrated
	3612	fixes
	3613	from
	3614	Arni.
1327	3615
1328	3616	2005-03-22 02:50 warnes
1329	3617
1330		* [r576] man/read.xls.Rd: Improve documentation of 'perl' argument
1331		and give examples.
	3618	* [r576]
	3619	man/read.xls.Rd:
	3620	Improve
	3621	documentation
	3622	of
	3623	'perl'
	3624	argument
	3625	and
	3626	give
	3627	examples.
1332	3628
1333	3629	2005-03-09 23:39 warnes
1334	3630
1335		* [r573] R/ConvertMedUnits.R, man/ConvertMedUnits.Rd,
1336		man/MedUnits.Rd: - Add ConvertMedUnits() plus documentation
1337		- Add documentation for MedUnits data set.
	3631	* [r573]
	3632	R/ConvertMedUnits.R,
	3633	man/ConvertMedUnits.Rd,
	3634	man/MedUnits.Rd:
	3635	-
	3636	Add
	3637	ConvertMedUnits()
	3638	plus
	3639	documentation -
	3640	Add
	3641	documentation
	3642	for
	3643	MedUnits
	3644	data
	3645	set.
1338	3646
1339	3647	2005-03-09 23:37 warnes
1340	3648
1341		* [r572] data/MedUnits.Rda: Update MedUnits data file.
	3649	* [r572]
	3650	data/MedUnits.Rda:
	3651	Update
	3652	MedUnits
	3653	data
	3654	file.
1342	3655
1343	3656	2005-03-09 22:00 warnes
1344	3657
1345		* [r571] data/MedUnits.tab: Don't need both .Rda and .tab forms of
1346		the data.
	3658	* [r571]
	3659	data/MedUnits.tab:
	3660	Don't
	3661	need
	3662	both
	3663	.Rda
	3664	and
	3665	.tab
	3666	forms
	3667	of
	3668	the
	3669	data.
1347	3670
1348	3671	2005-03-09 21:55 warnes
1349	3672
1350		* [r570] data, data/MedUnits.Rda, data/MedUnits.tab: Add MedUnits
1351		data set, which provides conversions between American
1352		'Conventional' and Standard Intertional (SI) medical units.
	3673	* [r570]
	3674	data,
	3675	data/MedUnits.Rda,
	3676	data/MedUnits.tab:
	3677	Add
	3678	MedUnits
	3679	data
	3680	set,
	3681	which
	3682	provides
	3683	conversions
	3684	between
	3685	American 'Conventional'
	3686	and
	3687	Standard
	3688	Intertional
	3689	(SI)
	3690	medical
	3691	units.
1353	3692
1354	3693	2005-03-01 17:59 warnes
1355	3694
1356		* [r566] man/elem.Rd, man/ll.Rd: - Remove 'elem' call from ll
1357		example.
1358		- Add note to 'elem' man page that it is depreciated and 'll'
	3695	* [r566]
	3696	man/elem.Rd,
	3697	man/ll.Rd:
	3698	-
	3699	Remove
	3700	'elem'
	3701	call
	3702	from
	3703	ll
	3704	example. -
	3705	Add
	3706	note
	3707	to
	3708	'elem'
	3709	man
	3710	page
	3711	that
	3712	it
	3713	is
	3714	depreciated
	3715	and
	3716	'll'
1359	3717	should
1360		be used instead.
	3718
	3719	be
	3720	used
	3721	instead.
1361	3722
1362	3723	2005-02-26 01:15 nj7w
1363	3724
1364		* [r565] NAMESPACE, man/elem.Rd, man/env.Rd, man/ll.Rd,
1365		man/read.xls.Rd, trunk/gplots/R/heatmap.2.R,
1366		trunk/gplots/man/heatmap.2.Rd, trunk/gplots/man/rich.color.Rd,
1367		trunk/gplots/man/sinkplot.Rd, trunk/gplots/man/textplot.Rd: ***
1368		empty log message ***
	3725	* [r565]
	3726	NAMESPACE,
	3727	man/elem.Rd,
	3728	man/env.Rd,
	3729	man/ll.Rd,
	3730	man/read.xls.Rd,
	3731	trunk/gplots/R/heatmap.2.R,
	3732	trunk/gplots/man/heatmap.2.Rd,
	3733	trunk/gplots/man/rich.color.Rd,
	3734	trunk/gplots/man/sinkplot.Rd,
	3735	trunk/gplots/man/textplot.Rd:
	3736	***
	3737	empty
	3738	log
	3739	message
	3740	***
1369	3741
1370	3742	2005-02-25 23:32 warnes
1371	3743
1372		* [r564] NAMESPACE: Remove ll methods since the base function now
1373		handles lists and data frames.
	3744	* [r564]
	3745	NAMESPACE:
	3746	Remove
	3747	ll
	3748	methods
	3749	since
	3750	the
	3751	base
	3752	function
	3753	now
	3754	handles
	3755	lists
	3756	and
	3757	data
	3758	frames.
1374	3759
1375	3760	2005-02-25 23:22 warnes
1376	3761
1377		* [r563] R/elem.R, R/env.R, R/ll.R, man/Args.Rd, man/env.Rd,
1378		man/ll.Rd, trunk/gplots/man/rich.color.Rd: Integrate changes
1379		submitted by Arni Magnusson
	3762	* [r563]
	3763	R/elem.R,
	3764	R/env.R,
	3765	R/ll.R,
	3766	man/Args.Rd,
	3767	man/env.Rd,
	3768	man/ll.Rd,
	3769	trunk/gplots/man/rich.color.Rd:
	3770	Integrate
	3771	changes
	3772	submitted
	3773	by
	3774	Arni
	3775	Magnusson
1380	3776
1381	3777	2005-01-31 22:22 warnes
1382	3778
1383		* [r529] R/read.xls.R, man/read.xls.Rd: Add ability to specify the
1384		perl executable and path.
	3779	* [r529]
	3780	R/read.xls.R,
	3781	man/read.xls.Rd:
	3782	Add
	3783	ability
	3784	to
	3785	specify
	3786	the
	3787	perl
	3788	executable
	3789	and
	3790	path.
1385	3791
1386	3792	2005-01-28 18:58 warnes
1387	3793
1388		* [r526] DESCRIPTION.in, NAMESPACE: Add dependency on stats.
	3794	* [r526]
	3795	DESCRIPTION.in,
	3796	NAMESPACE:
	3797	Add
	3798	dependency
	3799	on
	3800	stats.
1389	3801
1390	3802	2005-01-12 20:50 warnes
1391	3803
1392		* [r515] DESCRIPTION.in, trunk/gmodels/DESCRIPTION.in,
1393		trunk/gplots/DESCRIPTION.in, trunk/gtools/DESCRIPTION.in: Add
1394		dependency on R 1.9.0+ to prevent poeple from installing on old
1395		versions of R which don't support namespaces.
	3804	* [r515]
	3805	DESCRIPTION.in,
	3806	trunk/gmodels/DESCRIPTION.in,
	3807	trunk/gplots/DESCRIPTION.in,
	3808	trunk/gtools/DESCRIPTION.in:
	3809	Add
	3810	dependency
	3811	on
	3812	R
	3813	1.9.0+
	3814	to
	3815	prevent
	3816	poeple
	3817	from
	3818	installing
	3819	on
	3820	old versions
	3821	of
	3822	R
	3823	which
	3824	don't
	3825	support
	3826	namespaces.
1396	3827
1397	3828	2004-12-27 22:09 warnes
1398	3829
1399		* [r509] man/unmatrix.Rd: Update usage to match code.
	3830	* [r509]
	3831	man/unmatrix.Rd:
	3832	Update
	3833	usage
	3834	to
	3835	match
	3836	code.
1400	3837
1401	3838	2004-12-27 22:05 warnes
1402	3839
1403		* [r508] R/unmatrix.R: Replace 'F' with 'FALSE'.
	3840	* [r508]
	3841	R/unmatrix.R:
	3842	Replace
	3843	'F'
	3844	with
	3845	'FALSE'.
1404	3846
1405	3847	2004-10-12 14:57 warneg
1406	3848
1407		* [r465] R/unmatrix.R, man/unmatrix.Rd: Add unmatrix() function
	3849	* [r465]
	3850	R/unmatrix.R,
	3851	man/unmatrix.Rd:
	3852	Add
	3853	unmatrix()
	3854	function
1408	3855
1409	3856	2004-09-27 21:01 warneg
1410	3857
1411		* [r461] DESCRIPTION, DESCRIPTION.in, NAMESPACE, man/.Rhistory,
1412		trunk/gmodels/DESCRIPTION, trunk/gmodels/DESCRIPTION.in,
1413		trunk/gplots/DESCRIPTION, trunk/gplots/DESCRIPTION.in,
1414		trunk/gplots/man/sinkplot.Rd, trunk/gplots/man/textplot.Rd,
1415		trunk/gregmisc/.Rhistory, trunk/gregmisc/DESCRIPTION,
1416		trunk/gtools/DESCRIPTION, trunk/gtools/DESCRIPTION.in,
1417		trunk/gtools/man/running.Rd: Updated to pass R CMD check.
	3858	* [r461]
	3859	DESCRIPTION,
	3860	DESCRIPTION.in,
	3861	NAMESPACE,
	3862	man/.Rhistory,
	3863	trunk/gmodels/DESCRIPTION,
	3864	trunk/gmodels/DESCRIPTION.in,
	3865	trunk/gplots/DESCRIPTION,
	3866	trunk/gplots/DESCRIPTION.in,
	3867	trunk/gplots/man/sinkplot.Rd,
	3868	trunk/gplots/man/textplot.Rd,
	3869	trunk/gregmisc/.Rhistory,
	3870	trunk/gregmisc/DESCRIPTION,
	3871	trunk/gtools/DESCRIPTION,
	3872	trunk/gtools/DESCRIPTION.in,
	3873	trunk/gtools/man/running.Rd:
	3874	Updated
	3875	to
	3876	pass
	3877	R
	3878	CMD
	3879	check.
1418	3880
1419	3881	2004-09-03 23:08 warneg
1420	3882
1421		* [r455] inst/xls, inst/xls/iris.xls: added to cvs.
	3883	* [r455]
	3884	inst/xls,
	3885	inst/xls/iris.xls:
	3886	added
	3887	to
	3888	cvs.
1422	3889
1423	3890	2004-09-03 22:58 warneg
1424	3891
1425		* [r454] inst/perl/xls2csv.pl: Checkin xls2csv.pl. Should have been
1426		in long ago, must have been an oversight
	3892	* [r454]
	3893	inst/perl/xls2csv.pl:
	3894	Checkin
	3895	xls2csv.pl.
	3896
	3897	Should
	3898	have
	3899	been
	3900	in
	3901	long
	3902	ago,
	3903	must
	3904	have
	3905	been
	3906	an
	3907	oversight
1427	3908
1428	3909	2004-09-03 22:46 warneg
1429	3910
1430		* [r451] R/read.xls.R: Need to look for files using the new package
	3911	* [r451]
	3912	R/read.xls.R:
	3913	Need
	3914	to
	3915	look
	3916	for
	3917	files
	3918	using
	3919	the
	3920	new
	3921	package
1431	3922	name.
1432	3923
1433	3924	2004-09-03 22:43 warneg
1434	3925
1435		* [r449] man/read.xls.Rd: Need to use the new package name when
1436		looking for iris.xls.
	3926	* [r449]
	3927	man/read.xls.Rd:
	3928	Need
	3929	to
	3930	use
	3931	the
	3932	new
	3933	package
	3934	name
	3935	when
	3936	looking
	3937	for
	3938	iris.xls.
1437	3939
1438	3940	2004-09-03 22:42 warneg
1439	3941
1440		* [r448] man/ll.Rd: Add ll.list to the to the list of functions
	3942	* [r448]
	3943	man/ll.Rd:
	3944	Add
	3945	ll.list
	3946	to
	3947	the
	3948	to
	3949	the
	3950	list
	3951	of
	3952	functions
1441	3953	described
1442	3954
1443	3955	2004-09-03 22:42 warneg
1444	3956
1445		* [r447] NAMESPACE: Add ll and friends to the namespace
	3957	* [r447]
	3958	NAMESPACE:
	3959	Add
	3960	ll
	3961	and
	3962	friends
	3963	to
	3964	the
	3965	namespace
1446	3966
1447	3967	2004-09-03 17:27 warneg
1448	3968
1449		* [r446] DESCRIPTION, DESCRIPTION.in, NAMESPACE, R/Args.R,
1450		R/aggregate.table.R, R/combine.R, R/elem.R, R/env.R,
1451		R/interleave.R, R/is.what.R, R/keep.R, R/ll.R, R/matchcols.R,
1452		R/nobs.R, R/read.xls.R, R/rename.vars.R, R/reorder.R, R/trim.R,
1453		man/reorder.Rd, trunk/gmodels/DESCRIPTION,
1454		trunk/gmodels/NAMESPACE, trunk/gmodels/R/CrossTable.R,
1455		trunk/gmodels/R/ci.R, trunk/gmodels/R/estimable.R,
1456		trunk/gmodels/R/fast.prcomp.R, trunk/gmodels/R/fit.contrast.R,
1457		trunk/gmodels/R/glh.test.R, trunk/gmodels/R/make.contrasts.R,
	3969	* [r446]
	3970	DESCRIPTION,
	3971	DESCRIPTION.in,
	3972	NAMESPACE,
	3973	R/Args.R,
	3974	R/aggregate.table.R,
	3975	R/combine.R,
	3976	R/elem.R,
	3977	R/env.R,
	3978	R/interleave.R,
	3979	R/is.what.R,
	3980	R/keep.R,
	3981	R/ll.R,
	3982	R/matchcols.R,
	3983	R/nobs.R,
	3984	R/read.xls.R,
	3985	R/rename.vars.R,
	3986	R/reorder.R,
	3987	R/trim.R,
	3988	man/reorder.Rd,
	3989	trunk/gmodels/DESCRIPTION,
	3990	trunk/gmodels/NAMESPACE,
	3991	trunk/gmodels/R/CrossTable.R,
	3992	trunk/gmodels/R/ci.R,
	3993	trunk/gmodels/R/estimable.R,
	3994	trunk/gmodels/R/fast.prcomp.R,
	3995	trunk/gmodels/R/fit.contrast.R,
	3996	trunk/gmodels/R/glh.test.R,
	3997	trunk/gmodels/R/make.contrasts.R,
1458	3998	trunk/gmodels/man/estimable.Rd,
1459		trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
1460		trunk/gmodels/man/make.contrasts.Rd, trunk/gplots/DESCRIPTION,
1461		trunk/gplots/NAMESPACE, trunk/gplots/R/balloonplot.R,
1462		trunk/gplots/R/bandplot.R, trunk/gplots/R/barplot2.R,
1463		trunk/gplots/R/boxplot.n.R, trunk/gplots/R/colorpanel.R,
1464		trunk/gplots/R/heatmap.2.R, trunk/gplots/R/hist2d.R,
1465		trunk/gplots/R/lowess.R, trunk/gplots/R/ooplot.R,
1466		trunk/gplots/R/overplot.R, trunk/gplots/R/plotCI.R,
1467		trunk/gplots/R/plotmeans.R, trunk/gplots/R/qqnorm.aov.R,
1468		trunk/gplots/R/residplot.R, trunk/gplots/R/rich.color.R,
1469		trunk/gplots/R/sinkplot.R, trunk/gplots/R/smartlegend.R,
1470		trunk/gplots/R/space.R, trunk/gplots/R/textplot.R,
1471		trunk/gplots/R/wapply.R, trunk/gtools/DESCRIPTION,
1472		trunk/gtools/NAMESPACE, trunk/gtools/R/dirichlet.R,
1473		trunk/gtools/R/foldchange.R, trunk/gtools/R/invalid.R,
1474		trunk/gtools/R/mixedsort.R, trunk/gtools/R/oddeven.R,
1475		trunk/gtools/R/permute.R, trunk/gtools/R/quantcut.R,
1476		trunk/gtools/R/running.R, trunk/gtools/man/running.Rd: initial
1477		bundle checkin
	3999	trunk/gmodels/man/fit.contrast.Rd,
	4000	trunk/gmodels/man/glh.test.Rd,
	4001	trunk/gmodels/man/make.contrasts.Rd,
	4002	trunk/gplots/DESCRIPTION,
	4003	trunk/gplots/NAMESPACE,
	4004	trunk/gplots/R/balloonplot.R,
	4005	trunk/gplots/R/bandplot.R,
	4006	trunk/gplots/R/barplot2.R,
	4007	trunk/gplots/R/boxplot.n.R,
	4008	trunk/gplots/R/colorpanel.R,
	4009	trunk/gplots/R/heatmap.2.R,
	4010	trunk/gplots/R/hist2d.R,
	4011	trunk/gplots/R/lowess.R,
	4012	trunk/gplots/R/ooplot.R,
	4013	trunk/gplots/R/overplot.R,
	4014	trunk/gplots/R/plotCI.R,
	4015	trunk/gplots/R/plotmeans.R,
	4016	trunk/gplots/R/qqnorm.aov.R,
	4017	trunk/gplots/R/residplot.R,
	4018	trunk/gplots/R/rich.color.R,
	4019	trunk/gplots/R/sinkplot.R,
	4020	trunk/gplots/R/smartlegend.R,
	4021	trunk/gplots/R/space.R,
	4022	trunk/gplots/R/textplot.R,
	4023	trunk/gplots/R/wapply.R,
	4024	trunk/gtools/DESCRIPTION,
	4025	trunk/gtools/NAMESPACE,
	4026	trunk/gtools/R/dirichlet.R,
	4027	trunk/gtools/R/foldchange.R,
	4028	trunk/gtools/R/invalid.R,
	4029	trunk/gtools/R/mixedsort.R,
	4030	trunk/gtools/R/oddeven.R,
	4031	trunk/gtools/R/permute.R,
	4032	trunk/gtools/R/quantcut.R,
	4033	trunk/gtools/R/running.R,
	4034	trunk/gtools/man/running.Rd:
	4035	initial
	4036	bundle
	4037	checkin
1478	4038
1479	4039	2004-09-02 17:14 warneg
1480	4040
1481		* [r442] DESCRIPTION, DESCRIPTION.in, NAMESPACE, man/.Rhistory,
1482		trunk/gmodels/DESCRIPTION, trunk/gmodels/DESCRIPTION.in,
1483		trunk/gmodels/NAMESPACE, trunk/gplots/DESCRIPTION,
1484		trunk/gplots/DESCRIPTION.in, trunk/gplots/NAMESPACE,
1485		trunk/gplots/man/1, trunk/gplots/man/residplot.Rd,
1486		trunk/gregmisc/.Rhistory, trunk/gtools/DESCRIPTION,
1487		trunk/gtools/DESCRIPTION.in, trunk/gtools/NAMESPACE: Initial
	4041	* [r442]
	4042	DESCRIPTION,
	4043	DESCRIPTION.in,
	4044	NAMESPACE,
	4045	man/.Rhistory,
	4046	trunk/gmodels/DESCRIPTION,
	4047	trunk/gmodels/DESCRIPTION.in,
	4048	trunk/gmodels/NAMESPACE,
	4049	trunk/gplots/DESCRIPTION,
	4050	trunk/gplots/DESCRIPTION.in,
	4051	trunk/gplots/NAMESPACE,
	4052	trunk/gplots/man/1,
	4053	trunk/gplots/man/residplot.Rd,
	4054	trunk/gregmisc/.Rhistory,
	4055	trunk/gtools/DESCRIPTION,
	4056	trunk/gtools/DESCRIPTION.in,
	4057	trunk/gtools/NAMESPACE:
	4058	Initial
1488	4059	revision
1489	4060
1490	4061	2004-08-27 21:57 warnes
1491	4062
1492		* [r441] R/reorder.R, man/reorder.Rd, trunk/gtools/R/mixedsort.R,
1493		trunk/gtools/man/mixedsort.Rd: Fixed bug in mixedsort, and
1494		modified reorder.factor to use mixedsort.
	4063	* [r441]
	4064	R/reorder.R,
	4065	man/reorder.Rd,
	4066	trunk/gtools/R/mixedsort.R,
	4067	trunk/gtools/man/mixedsort.Rd:
	4068	Fixed
	4069	bug
	4070	in
	4071	mixedsort,
	4072	and
	4073	modified
	4074	reorder.factor
	4075	to
	4076	use
	4077	mixedsort.
1495	4078
1496	4079	2004-07-29 15:27 warnes
1497	4080
1498		* [r427] inst/perl, inst/perl/IO, inst/perl/IO/AtomicFile.pm,
1499		inst/perl/IO/InnerFile.pm, inst/perl/IO/Lines.pm,
1500		inst/perl/IO/Scalar.pm, inst/perl/IO/Scalar.pm.html,
1501		inst/perl/IO/ScalarArray.pm, inst/perl/IO/Stringy.pm,
1502		inst/perl/IO/Wrap.pm, inst/perl/IO/WrapTie.pm, inst/perl/OLE,
1503		inst/perl/OLE/Storage_Lite.pm, inst/perl/Spreadsheet,
	4081	* [r427]
	4082	inst/perl,
	4083	inst/perl/IO,
	4084	inst/perl/IO/AtomicFile.pm,
	4085	inst/perl/IO/InnerFile.pm,
	4086	inst/perl/IO/Lines.pm,
	4087	inst/perl/IO/Scalar.pm,
	4088	inst/perl/IO/Scalar.pm.html,
	4089	inst/perl/IO/ScalarArray.pm,
	4090	inst/perl/IO/Stringy.pm,
	4091	inst/perl/IO/Wrap.pm,
	4092	inst/perl/IO/WrapTie.pm,
	4093	inst/perl/OLE,
	4094	inst/perl/OLE/Storage_Lite.pm,
	4095	inst/perl/Spreadsheet,
1504	4096	inst/perl/Spreadsheet/ParseExcel,
1505	4097	inst/perl/Spreadsheet/ParseExcel.pm,
1506	4098	inst/perl/Spreadsheet/ParseExcel/Dump.pm,

1509	4101	inst/perl/Spreadsheet/ParseExcel/FmtJapan2.pm,
1510	4102	inst/perl/Spreadsheet/ParseExcel/FmtUnicode.pm,
1511	4103	inst/perl/Spreadsheet/ParseExcel/SaveParser.pm,
1512		inst/perl/Spreadsheet/ParseExcel/Utility.pm: Add perl modules to
	4104	inst/perl/Spreadsheet/ParseExcel/Utility.pm:
	4105	Add
	4106	perl
	4107	modules
	4108	to
1513	4109	CVS.
1514	4110
1515	4111	2004-07-27 14:29 warnes
1516	4112
1517		* [r425] man/read.xls.Rd: Fix typos/spelling.
	4113	* [r425]
	4114	man/read.xls.Rd:
	4115	Fix
	4116	typos/spelling.
1518	4117
1519	4118	2004-07-27 14:25 warnes
1520	4119
1521		* [r424] man/read.xls.Rd: Add note that Perl is required for
1522		read.xls to work properly.
	4120	* [r424]
	4121	man/read.xls.Rd:
	4122	Add
	4123	note
	4124	that
	4125	Perl
	4126	is
	4127	required
	4128	for
	4129	read.xls
	4130	to
	4131	work
	4132	properly.
1523	4133
1524	4134	2004-07-16 19:28 warnes
1525	4135
1526		* [r420] R/read.xls.R: Remove the temporary csv file if reading it
1527		in fails.
	4136	* [r420]
	4137	R/read.xls.R:
	4138	Remove
	4139	the
	4140	temporary
	4141	csv
	4142	file
	4143	if
	4144	reading
	4145	it
	4146	in
	4147	fails.
1528	4148
1529	4149	2004-06-22 17:09 warnes
1530	4150
1531		* [r377] R/ll.R, man/ll.Rd: Add S3 methods for data frames and
	4151	* [r377]
	4152	R/ll.R,
	4153	man/ll.Rd:
	4154	Add
	4155	S3
	4156	methods
	4157	for
	4158	data
	4159	frames
	4160	and
1532	4161	lists.
1533	4162
1534	4163	2004-06-08 03:54 warnes
1535	4164
1536		* [r371] inst/bin, inst/bin/xls2csv, inst/bin/xls2csv.bat: Moved
1537		from gregmisc/src/.
	4165	* [r371]
	4166	inst/bin,
	4167	inst/bin/xls2csv,
	4168	inst/bin/xls2csv.bat:
	4169	Moved
	4170	from
	4171	gregmisc/src/.
1538	4172
1539	4173	2004-06-08 03:44 warnes
1540	4174
1541		* [r370] inst/tools: Remove the files in src, instead provide
1542		"pre-installed" perl packages
1543		in inst/perl.
	4175	* [r370]
	4176	inst/tools:
	4177	Remove
	4178	the
	4179	files
	4180	in
	4181	src,
	4182	instead
	4183	provide
	4184	"pre-installed"
	4185	perl
	4186	packages in
	4187	inst/perl.
1544	4188
1545	4189	2004-06-05 05:42 warnes
1546	4190
1547		* [r365] inst/tools/Makefile: Fix typo.
	4191	* [r365]
	4192	inst/tools/Makefile:
	4193	Fix
	4194	typo.
1548	4195
1549	4196	2004-06-05 05:34 warnes
1550	4197
1551		* [r364] inst/tools/Makefile: Fix Unix makefile so that it works
1552		when invoked directly.
	4198	* [r364]
	4199	inst/tools/Makefile:
	4200	Fix
	4201	Unix
	4202	makefile
	4203	so
	4204	that
	4205	it
	4206	works
	4207	when
	4208	invoked
	4209	directly.
1553	4210
1554	4211	2004-06-05 05:30 warnes
1555	4212
1556		* [r363] inst/tools/Makefile: Fixes for Windows
	4213	* [r363]
	4214	inst/tools/Makefile:
	4215	Fixes
	4216	for
	4217	Windows
1557	4218
1558	4219	2004-06-05 05:22 warnes
1559	4220
1560		* [r362] man/read.xls.Rd: Minor enhancment to read.xls example.
	4221	* [r362]
	4222	man/read.xls.Rd:
	4223	Minor
	4224	enhancment
	4225	to
	4226	read.xls
	4227	example.
1561	4228
1562	4229	2004-06-05 04:05 warnes
1563	4230
1564		* [r361] inst/tools/Makefile, inst/xls, trunk/gregmisc/DESCRIPTION,
1565		trunk/gregmisc/NEWS: - Merge Makefile.win into Makefile.
1566		Makefile.win now just redirects
1567		to Makefile.
1568		- Update xls2csv.bat and xls2csv shell script to correctly obtain
1569		thier installion path and infer the location of the perl code and
1570		libraries.
1571		- The xls2csv.pl script now assumes that the libraries it needs
	4231	* [r361]
	4232	inst/tools/Makefile,
	4233	inst/xls,
	4234	trunk/gregmisc/DESCRIPTION,
	4235	trunk/gregmisc/NEWS:
	4236	-
	4237	Merge
	4238	Makefile.win
	4239	into
	4240	Makefile.
	4241
	4242	Makefile.win
	4243	now
	4244	just
	4245	redirects
	4246
	4247	to
	4248	Makefile. -
	4249	Update
	4250	xls2csv.bat
	4251	and
	4252	xls2csv
	4253	shell
	4254	script
	4255	to
	4256	correctly
	4257	obtain
	4258
	4259	thier
	4260	installion
	4261	path
	4262	and
	4263	infer
	4264	the
	4265	location
	4266	of
	4267	the
	4268	perl
	4269	code
	4270	and
	4271
	4272	libraries. -
	4273	The
	4274	xls2csv.pl
	4275	script
	4276	now
	4277	assumes
	4278	that
	4279	the
	4280	libraries
	4281	it
	4282	needs
1572	4283	are
1573		installed into the same directory where it is.
	4284
	4285	installed
	4286	into
	4287	the
	4288	same
	4289	directory
	4290	where
	4291	it
	4292	is.
1574	4293
1575	4294	2004-06-04 20:42 warnes
1576	4295
1577		* [r360] inst/tools/Makefile: More changes, indended to improve
1578		installation reliabilty and to make
1579		Makefile and Makefile.win as similar as possible.
	4296	* [r360]
	4297	inst/tools/Makefile:
	4298	More
	4299	changes,
	4300	indended
	4301	to
	4302	improve
	4303	installation
	4304	reliabilty
	4305	and
	4306	to
	4307	make Makefile
	4308	and
	4309	Makefile.win
	4310	as
	4311	similar
	4312	as
	4313	possible.
1580	4314
1581	4315	2004-05-27 22:39 warnes
1582	4316
1583		* [r358] inst/tools/Makefile: Clean should remove scripts from
1584		source directory.
	4317	* [r358]
	4318	inst/tools/Makefile:
	4319	Clean
	4320	should
	4321	remove
	4322	scripts
	4323	from
	4324	source
	4325	directory.
1585	4326
1586	4327	2004-05-27 22:38 warnes
1587	4328
1588		* [r357] inst/perl: Moved to xls2csv.pl.in.
	4329	* [r357]
	4330	inst/perl:
	4331	Moved
	4332	to
	4333	xls2csv.pl.in.
1589	4334
1590	4335	2004-05-27 22:20 warnes
1591	4336
1592		* [r354] inst/perl/xls2csv.pl, inst/tools/Makefile: More fixes.
	4337	* [r354]
	4338	inst/perl/xls2csv.pl,
	4339	inst/tools/Makefile:
	4340	More
	4341	fixes.
1593	4342
1594	4343	2004-05-27 22:20 warnes
1595	4344
1596		* [r353] man/elem.Rd: Fix missing brace.
	4345	* [r353]
	4346	man/elem.Rd:
	4347	Fix
	4348	missing
	4349	brace.
1597	4350
1598	4351	2004-05-27 21:43 warnes
1599	4352
1600		* [r352] man/elem.Rd: Add explicit package name to see also links.
	4353	* [r352]
	4354	man/elem.Rd:
	4355	Add
	4356	explicit
	4357	package
	4358	name
	4359	to
	4360	see
	4361	also
	4362	links.
1601	4363
1602	4364	2004-05-27 21:24 warnes
1603	4365
1604		* [r351] inst/perl/xls2csv.pl, inst/tools/Makefile: More xls2csv
1605		perl module support changes.
	4366	* [r351]
	4367	inst/perl/xls2csv.pl,
	4368	inst/tools/Makefile:
	4369	More
	4370	xls2csv
	4371	perl
	4372	module
	4373	support
	4374	changes.
1606	4375
1607	4376	2004-05-27 20:37 warnes
1608	4377
1609		* [r350] inst/tools/Makefile: More changes to fix local
1610		installation of perl modules.
	4378	* [r350]
	4379	inst/tools/Makefile:
	4380	More
	4381	changes
	4382	to
	4383	fix
	4384	local
	4385	installation
	4386	of
	4387	perl
	4388	modules.
1611	4389
1612	4390	2004-05-26 13:40 warnes
1613	4391
1614		* [r345] man/read.xls.Rd, trunk/gtools/man/combinations.Rd: Escape
1615		underscores in email addresses so Latex is happy.
	4392	* [r345]
	4393	man/read.xls.Rd,
	4394	trunk/gtools/man/combinations.Rd:
	4395	Escape
	4396	underscores
	4397	in
	4398	email
	4399	addresses
	4400	so
	4401	Latex
	4402	is
	4403	happy.
1616	4404
1617	4405	2004-05-25 18:45 warnes
1618	4406
1619		* [r339] inst/perl/xls2csv.pl, inst/tools/Makefile: More changes to
1620		xls2csv code.
	4407	* [r339]
	4408	inst/perl/xls2csv.pl,
	4409	inst/tools/Makefile:
	4410	More
	4411	changes
	4412	to
	4413	xls2csv
	4414	code.
1621	4415
1622	4416	2004-05-25 17:35 warnes
1623	4417
1624		* [r337] R/Args.R, man/Args.Rd: Add Args() function contributed by
1625		Arni Magnusson <arnima@u.washington.edu>.
	4418	* [r337]
	4419	R/Args.R,
	4420	man/Args.Rd:
	4421	Add
	4422	Args()
	4423	function
	4424	contributed
	4425	by
	4426	Arni
	4427	Magnusson
	4428	<arnima@u.washington.edu>.
1626	4429
1627	4430	2004-05-25 17:14 warnes
1628	4431
1629		* [r335] R/read.xls.R: - Change to call perl directly rather than
1630		depending on the installed
1631		shell script. This should make the code more portable to
1632		MS-Windows
1633		systes.
1634
1635		- Add additional commants..
	4432	* [r335]
	4433	R/read.xls.R:
	4434	-
	4435	Change
	4436	to
	4437	call
	4438	perl
	4439	directly
	4440	rather
	4441	than
	4442	depending
	4443	on
	4444	the
	4445	installed shell
	4446	script.
	4447
	4448	This
	4449	should
	4450	make
	4451	the
	4452	code
	4453	more
	4454	portable
	4455	to
	4456	MS-Windows systes. -
	4457	Add
	4458	additional
	4459	commants..
1636	4460
1637	4461	2004-05-25 14:53 warnes
1638	4462
1639		* [r332] inst/tools/Makefile: Makefile now modifies xls2csv.bat
1640		xls2csv.pl and xls2csv to contain an
1641		explicit path to the perl script/libraries.
	4463	* [r332]
	4464	inst/tools/Makefile:
	4465	Makefile
	4466	now
	4467	modifies
	4468	xls2csv.bat
	4469	xls2csv.pl
	4470	and
	4471	xls2csv
	4472	to
	4473	contain
	4474	an explicit
	4475	path
	4476	to
	4477	the
	4478	perl
	4479	script/libraries.
1642	4480
1643	4481	2004-05-25 11:41 warnes
1644	4482
1645		* [r330] inst/tools/Makefile: R CMD build calls the clean target to
1646		purge build files from the
1647		source tree when packaging. To get use this behavior correctly,
	4483	* [r330]
	4484	inst/tools/Makefile:
	4485	R
	4486	CMD
	4487	build
	4488	calls
	4489	the
	4490	clean
	4491	target
	4492	to
	4493	purge
	4494	build
	4495	files
	4496	from
	4497	the source
	4498	tree
	4499	when
	4500	packaging.
	4501
	4502	To
	4503	get
	4504	use
	4505	this
	4506	behavior
	4507	correctly,
	4508	I've renamed
	4509	the
	4510	clean
	4511	target
	4512	to
	4513	cleanup
	4514	and
	4515	distclean
	4516	target
	4517	to
	4518	clean.
	4519
	4520	2004-05-25 11:35 warnes
	4521
	4522	* [r329]
	4523	R/read.xls.R,
	4524	man/read.xls.Rd:
	4525	Add
	4526	read.xls(),
	4527	a
	4528	function
	4529	to
	4530	read
	4531	Microsoft
	4532	Excel
	4533	files
	4534	by translating
	4535	them
	4536	to
	4537	csv
	4538	files
	4539	via
	4540	the
	4541	xls2csv.pl
	4542	script.
	4543
	4544	2004-05-25 02:46 warnes
	4545
	4546	* [r326]
	4547	inst/tools/Makefile:
	4548	More
	4549	fixes.
	4550
	4551	Seems
	4552	to
	4553	work
	4554	now.
	4555
	4556	2004-05-24 23:46 warnes
	4557
	4558	* [r325]
	4559	inst/perl,
	4560	inst/perl/xls2csv.pl,
	4561	inst/tools,
	4562	inst/tools/Makefile,
	4563	inst/xls,
	4564	inst/xls/iris.xls:
	4565	Add
	4566	files
	4567	to
	4568	enable
	4569	inclusion
	4570	and
	4571	installation
	4572	of
	4573	xls2csv.pl
	4574	as
	4575	part of
	4576	the
	4577	package.
	4578
	4579	2004-04-01 20:23 warnes
	4580
	4581	* [r312]
	4582	R/rename.vars.R,
	4583	man/rename.vars.Rd:
	4584	Add
	4585	function
	4586	remove.vars().
	4587
	4588	2004-03-26 22:31 warnes
	4589
	4590	* [r307]
	4591	man/reorder.Rd:
	4592	Contents
	4593	of
	4594	package
	4595	'mva'
	4596	moveed
	4597	to
	4598	'stats'.
	4599
	4600	2004-03-26 22:02 warnes
	4601
	4602	* [r298]
	4603	R/is.what.R:
	4604	-
	4605	Fix
	4606	is.what()
	4607	for
	4608	use
	4609	under
	4610	R
	4611	1.9.0 -
	4612	is.what()
	4613	now
	4614	uses
	4615	is.*
	4616	functions
	4617	found
	4618	in
	4619	any
	4620	attached
	4621	frame
	4622
	4623	2004-01-21 12:06 warnes
	4624
	4625	* [r282]
	4626	R/reorder.R,
	4627	man/reorder.Rd:
	4628	-
	4629	Add
	4630	...
	4631	argument
	4632	to
	4633	match
	4634	generic
	4635	provided
	4636	in
	4637	mva.
	4638
	4639	2004-01-19 22:45 warnes
	4640
	4641	* [r275]
	4642	R/elem.R,
	4643	R/env.R,
	4644	R/ll.R,
	4645	man/keep.Rd,
	4646	man/ll.Rd:
	4647	-
	4648	Integrated
	4649	(partial)
	4650	patch
	4651	submitted
	4652	by
	4653	Arni
	4654	Magnusson
	4655	to
	4656	clarify
	4657	help
	4658	text. -
	4659	Modifed
	4660	code
	4661	to
	4662	use
	4663	match.arg().
	4664
	4665	2003-12-15 21:07 warnes
	4666
	4667	* [r271]
	4668	R/env.R:
	4669	-
	4670	Applied
	4671	patch
	4672	from
	4673	Arni
	4674	that
	4675	fixed
	4676	a
	4677	bug
	4678	that
	4679	caused
	4680	env()
	4681	to
	4682	crash
	4683
	4684	if
	4685	any
	4686	environment
	4687	was
	4688	completely
	4689	empty
	4690
	4691	2003-12-03 02:46 warnes
	4692
	4693	* [r253]
	4694	man/elem.Rd,
	4695	man/ll.Rd,
	4696	trunk/gplots/man/lowess.Rd,
	4697	trunk/gplots/man/textplot.Rd,
	4698	trunk/gplots/man/wapply.Rd,
	4699	trunk/gtools/man/foldchange.Rd:
	4700	-
	4701	match
	4702	function
	4703	argument
	4704	defaults
	4705	with
	4706	'usage'
	4707
	4708	2003-12-02 17:00 warnes
	4709
	4710	* [r249]
	4711	man/ll.Rd:
	4712	Add
	4713	one
	4714	argument,
	4715	to
	4716	match
	4717	code.
	4718
	4719	2003-12-01 15:56 warnes
	4720
	4721	* [r244]
	4722	R/elem.R,
	4723	R/env.R,
	4724	R/is.what.R,
	4725	R/keep.R,
	4726	R/ll.R:
	4727	-
	4728	Apply
	4729	changes
	4730	submitted
	4731	by
	4732	Arni
	4733	Magnusson
	4734
	4735	2003-11-19 14:54 warnes
	4736
	4737	* [r229]
	4738	man/env.Rd,
	4739	man/is.what.Rd,
	4740	man/keep.Rd,
	4741	man/ll.Rd:
	4742	Changes
	4743	to
	4744	pass
	4745	R
	4746	CMD
	4747	check.
	4748
	4749	2003-11-18 18:45 warnes
	4750
	4751	* [r224]
	4752	R/elem.R,
	4753	R/env.R,
	4754	R/is.what.R,
	4755	R/keep.R,
	4756	R/ll.R,
	4757	trunk/gplots/R/overplot.R:
	4758	-
	4759	Convert
	4760	from
	4761	MS-Dos
	4762	to
	4763	Unix
	4764	line
	4765	endings. -
	4766	Reformat
	4767	to
	4768	80
	4769	columns.
	4770
	4771	2003-11-17 22:09 warnes
	4772
	4773	* [r223]
	4774	man/elem.Rd:
	4775	Replace
	4776	'T'
	4777	with
	4778	'TRUE'
	4779	to
	4780	remove
	4781	R
	4782	CMD
	4783	check
	4784	error.
	4785
	4786	2003-11-17 22:09 warnes
	4787
	4788	* [r222]
	4789	man/aggregate.table.Rd:
	4790	Fix
	4791	syntax
	4792	error.
	4793
	4794	2003-11-10 22:11 warnes
	4795
	4796	* [r220]
	4797	R/elem.R,
	4798	R/env.R,
	4799	R/is.what.R,
	4800	R/keep.R,
	4801	R/ll.R,
	4802	man/elem.Rd,
	4803	man/env.Rd,
	4804	man/is.what.Rd,
	4805	man/keep.Rd,
	4806	man/ll.Rd,
	4807	trunk/gplots/R/heatmap.2.R,
	4808	trunk/gplots/R/overplot.R,
	4809	trunk/gplots/R/plotmeans.R,
	4810	trunk/gplots/R/space.R,
	4811	trunk/gplots/R/wapply.R,
	4812	trunk/gregmisc/DESCRIPTION,
	4813	trunk/gtools/R/capture.R,
	4814	trunk/gtools/man/capture.Rd:
	4815	-
	4816	Add
	4817	files
	4818	contributed
	4819	by
	4820	Arni
	4821	Magnusson
	4822
	4823	<arnima@u.washington.edu>.
	4824	As
	4825	well
	4826	as
	4827	some
	4828	of
	4829	my
	4830	own.
	4831
	4832	2003-06-07 17:58 warnes
	4833
	4834	* [r198]
	4835	man/aggregate.table.Rd,
	4836	man/interleave.Rd:
	4837	-
	4838	Fixed
	4839	error
	4840	in
	4841	examples.
	4842
	4843	Had
	4844	sqrt(var(x)/(n-1))
	4845	for
	4846	the
	4847	standard
	4848
	4849	error
	4850	of
	4851	the
	4852	mean
	4853	instead
	4854	of
	4855	sqrt(var(x)/n).
	4856
	4857	2003-05-23 18:32 warnes
	4858
	4859	* [r197]
	4860	R/matchcols.R,
	4861	man/matchcols.Rd:
	4862	-
	4863	Fixed
	4864	typos
	4865
	4866	2003-05-23 18:14 warnes
	4867
	4868	* [r196]
	4869	R/matchcols.R,
	4870	man/matchcols.Rd,
	4871	trunk/gtools/R/logit.R,
	4872	trunk/gtools/man/logit.Rd:
	4873	-
	4874	library()
	4875	backported
	4876	from
	4877	1.7-devel.
	4878
	4879	This
	4880	version
	4881	of
	4882	the
	4883	function
	4884
	4885	adds
	4886	the
	4887	"pos="
	4888	argument
	4889	to
	4890	specify
	4891	where
	4892	in
	4893	the
	4894	search
	4895	path
	4896	the
	4897
	4898	library
	4899	should
	4900	be
	4901	placed. -
	4902	updated
	4903	.First.lib
	4904	to
	4905	use
	4906	library(...pos=3)
	4907	for
	4908	MASS
	4909	to
	4910	avoid
	4911	the
	4912
	4913	'genotype'
	4914	data
	4915	set
	4916	in
	4917	MASS
	4918	from
	4919	masking
	4920	the
	4921	genotype
	4922	funciton
	4923	in
	4924
	4925	genetics
	4926	when
	4927	it
	4928	loads
	4929	gregmisc -
	4930	Added
	4931	logit()
	4932	inv.logit()
	4933	matchcols()
	4934	function
	4935	and
	4936	corresponding
	4937	docs
	4938
	4939	2003-05-20 16:03 warnes
	4940
	4941	* [r195]
	4942	R/interleave.R:
	4943	-
	4944	Omit
	4945	NULL
	4946	variables.
	4947
	4948	2003-05-20 13:16 warnes
	4949
	4950	* [r194]
	4951	R/trim.R,
	4952	man/trim.Rd,
	4953	trunk/gregmisc/DESCRIPTION:
	4954	-
	4955	Added
	4956	function
	4957	trim()
	4958	and
	4959	assocated
	4960	docs.
	4961
	4962	2003-04-22 15:42 warnes
	4963
	4964	* [r188]
	4965	R/reorder.R,
	4966	man/reorder.Rd:
	4967	-
	4968	The
	4969	mva
	4970	package
	4971	(which
	4972	is
	4973	part
	4974	of
	4975	recommended)
	4976	now
	4977	provides
	4978	a
	4979
	4980	generic
	4981	'reorder'
	4982	function.
	4983
	4984	Consequently,
	4985	the
	4986	'reorder'
	4987	function
	4988
	4989	here
	4990	has
	4991	been
	4992	renamed
	4993	to
	4994	'reorder.factor'. -
	4995	Removed
	4996	check
	4997	of
	4998	whether
	4999	the
	5000	argument
	5001	is
	5002	a
	5003	factor
	5004	object.
	5005
	5006	2003-03-03 17:48 warnes
	5007
	5008	* [r165]
	5009	man/reorder.Rd:
	5010	-
	5011	Updated
	5012	to
	5013	match
	5014	reorder.Rd
	5015	which
	5016	was
	5017	exetended
	5018	to
	5019	handle
	5020	factor
	5021
	5022	label
	5023	names
	5024	in
	5025	addition
	5026	to
	5027	numeric
	5028	indices.
	5029
	5030	2003-03-03 17:24 warnes
	5031
	5032	* [r164]
	5033	R/reorder.R:
	5034	-
	5035	Added
	5036	handling
	5037	of
	5038	factor
	5039	level
	5040	names
	5041	in
	5042	addition
	5043	to
	5044	numeric
	5045	indexes.
	5046
	5047	2002-09-23 14:02 warnes
	5048
	5049	* [r118]
	5050	inst,
	5051	inst/doc,
	5052	inst/doc/Rnews.dtx,
	5053	inst/doc/Rnews.sty,
	5054	inst/doc/gregmisc.pdf,
	5055	inst/doc/gregmisc.tex:
	5056	Added
	5057	inst/doc
	5058	directory
	5059	and
	5060	contents
	5061	to
	5062	CVS.
	5063
	5064	2002-09-23 13:59 warnes
	5065
	5066	* [r117]
	5067	R/aggregate.table.R,
	5068	R/combine.R,
	5069	R/interleave.R,
	5070	R/nobs.R,
	5071	man/aggregate.table.Rd,
	5072	man/combine.Rd,
	5073	man/interleave.Rd,
	5074	man/nobs.Rd,
	5075	man/rename.vars.Rd,
	5076	man/reorder.Rd,
	5077	trunk/gmodels/R/ci.R,
	5078	trunk/gmodels/man/estimable.Rd,
	5079	trunk/gmodels/man/glh.test.Rd,
	5080	trunk/gplots/R/boxplot.n.R,
	5081	trunk/gplots/R/hist2d.R,
	5082	trunk/gplots/R/lowess.R,
	5083	trunk/gplots/R/residplot.R,
	5084	trunk/gplots/man/bandplot.Rd,
	5085	trunk/gplots/man/hist2d.Rd,
	5086	trunk/gplots/man/lowess.Rd,
	5087	trunk/gplots/man/plotCI.Rd,
	5088	trunk/gplots/man/space.Rd,
	5089	trunk/gtools/man/combinations.Rd,
	5090	trunk/gtools/man/quantcut.Rd:
	5091	-
	5092	Modified
	5093	all
	5094	files
	5095	to
	5096	include
	5097	CVS
	5098	Id
	5099	and
	5100	Log
	5101	tags.
	5102
	5103	2002-08-01 18:06 warnes
	5104
	5105	* [r112]
	5106	R/reorder.R:
	5107	Added
	5108	reorder()
	5109	function
	5110	to
	5111	reorder
	5112	the
	5113	levels
	5114	of
	5115	a
	5116	factor.
	5117
	5118	2002-04-09 00:51 warneg
	5119
	5120	* [r109]
	5121	R/rename.vars.R,
	5122	man/aggregate.table.Rd,
	5123	man/interleave.Rd,
	5124	man/reorder.Rd,
	5125	trunk/gmodels/R/ci.R,
	5126	trunk/gmodels/R/estimable.R,
	5127	trunk/gmodels/R/glh.test.R,
	5128	trunk/gmodels/man/glh.test.Rd,
	5129	trunk/gplots/R/bandplot.R,
	5130	trunk/gplots/R/boxplot.n.R,
	5131	trunk/gplots/R/hist2d.R,
	5132	trunk/gplots/R/plot.lm.R,
	5133	trunk/gplots/R/plotCI.R,
	5134	trunk/gplots/R/plotmeans.R,
	5135	trunk/gplots/R/residplot.R,
	5136	trunk/gplots/R/space.R,
	5137	trunk/gplots/R/wapply.R,
	5138	trunk/gplots/man/bandplot.Rd,
	5139	trunk/gplots/man/boxplot.n.Rd,
	5140	trunk/gplots/man/hist2d.Rd,
	5141	trunk/gplots/man/plotmeans.Rd,
	5142	trunk/gplots/man/space.Rd,
	5143	trunk/gplots/man/wapply.Rd,
	5144	trunk/gregmisc/DESCRIPTION,
	5145	trunk/gtools/R/combinations.R,
	5146	trunk/gtools/man/combinations.Rd,
	5147	trunk/gtools/man/running.Rd:
	5148	Checkin
	5149	for
	5150	version
	5151	0.5.3
	5152
	5153	2002-04-09 00:46 warneg
	5154
	5155	* [r108]
	5156	R/interleave.R:
	5157	-
	5158	Properly
	5159	handle
	5160	case
	5161	when
	5162	some
	5163	or
	5164	all
	5165	arguments
	5166	are
	5167	vectors.
	5168
	5169	2002-03-26 21:22 warneg
	5170
	5171	* [r104]
	5172	man/reorder.Rd,
	5173	trunk/gmodels/R/ci.R,
	5174	trunk/gmodels/R/glh.test.R,
	5175	trunk/gmodels/man/ci.Rd,
	5176	trunk/gmodels/man/glh.test.Rd,
	5177	trunk/gplots/R/lowess.R,
	5178	trunk/gplots/man/lowess.Rd:
	5179	-
	5180	Changed
	5181	methods
	5182	to
	5183	include
	5184	'...'
	5185	to
	5186	match
	5187	the
	5188	generic. -
	5189	Updated
	5190	for
	5191	version
	5192	0.5.1
	5193
	5194	2002-03-26 19:29 warneg
	5195
	5196	* [r102]
	5197	R/nobs.R:
	5198	Added
	5199	...
	5200	to
	5201	methods.
	5202
	5203	2002-03-26 19:29 warneg
	5204
	5205	* [r101]
	5206	man/nobs.Rd:
	5207	Updated
	5208	to
	5209	add
	5210	...
	5211	parameter
	5212	to
	5213	function
	5214	calls.
	5215
	5216	2002-03-26 15:27 warneg
	5217
	5218	* [r98]
	5219	man/reorder.Rd:
	5220	Initial
	5221	checkin.
	5222
	5223	2002-03-26 14:28 warneg
	5224
	5225	* [r95]
	5226	R/nobs.R:
	5227	-
	5228	Added
	5229	CVS
	5230	tags
	5231
	5232	2002-02-21 21:45 warneg
	5233
	5234	* [r87]
	5235	R/aggregate.table.R:
	5236	-
	5237	Fixed
	5238	bug
	5239	where
	5240	row
	5241	and
	5242	column
	5243	labels
	5244	didn't
	5245	always
	5246	correspond
	5247	to
	5248	the contents.
	5249
	5250	This
	5251	only
	5252	occured
	5253	when
	5254	a
	5255	factor
	5256	was
	5257	used
	5258	for
	5259	by1
	5260	or
	5261	by2
	5262	and the
	5263	factors
	5264	levels
	5265	weren't
	5266	in
	5267	the
	5268	default
	5269	sort
	5270	order.
	5271
	5272	2002-02-20 22:10 warneg
	5273
	5274	* [r86]
	5275	R/aggregate.table.R:
	5276	New
	5277	function.
	5278
	5279	2002-02-20 22:09 warneg
	5280
	5281	* [r85]
	5282	man/aggregate.table.Rd:
	5283	Initial
	5284	checkin.
	5285
	5286	2002-02-20 21:42 warneg
	5287
	5288	* [r84]
	5289	R/interleave.R,
	5290	man/interleave.Rd:
	5291	Initial
	5292	checkin.
	5293
	5294	2002-02-20 21:31 warneg
	5295
	5296	* [r83]
	5297	man/nobs.Rd:
	5298	Noted
	5299	that
	5300	specialized
	5301	methods
	5302	exist.
	5303
	5304	2002-02-20 21:29 warneg
	5305
	5306	* [r82]
	5307	man/nobs.Rd:
	5308	Incorrectly
	5309	had
	5310	contents
	5311	of
	5312	nobs.R
	5313	here
	5314	instead
	5315	of
	5316	help
	5317	text.
	5318
	5319	Corrected.
	5320
	5321	2002-02-20 20:09 warneg
	5322
	5323	* [r81]
	5324	man/rename.vars.Rd,
	5325	trunk/gmodels/man/ci.Rd,
	5326	trunk/gmodels/man/estimable.Rd,
	5327	trunk/gmodels/man/glh.test.Rd,
	5328	trunk/gplots/man/lowess.Rd,
	5329	trunk/gplots/man/plotCI.Rd,
	5330	trunk/gplots/man/space.Rd:
	5331	Minor
	5332	changes,
	5333	typo
	5334	and
	5335	formatting
	5336	fixes.
	5337
	5338	2002-02-20 20:03 warneg
	5339
	5340	* [r79]
	5341	R/nobs.R,
	5342	man/nobs.Rd:
	5343	-
	5344	initial
	5345	checkin.
	5346
	5347	2001-12-12 01:39 warneg
	5348
	5349	* [r53]
	5350	man/rename.vars.Rd:
	5351	Added
	5352	omitted
	5353	documentaton
	5354	for
	5355	'info'
	5356	parameter.
	5357
	5358	Changed
	5359	example
	5360	code not
	5361	to
	5362	use
	5363	'Orthodont'
	5364	data
	5365	set
	5366	so
	5367	that
	5368	the
	5369	nlme
	5370	package
	5371	is
	5372	not
	5373	required.
	5374
	5375	2001-12-08 01:54 warneg
	5376
	5377	* [r47]
	5378	R/rename.vars.R:
	5379	Changed
	5380	'T'
	5381	to
	5382	'TRUE'
	5383	in
	5384	parameter
	5385	list.
	5386
	5387	2001-12-07 23:33 warneg
	5388
	5389	* [r45]
	5390	man/rename.vars.Rd:
	5391	-
	5392	Fixed
	5393	see
	5394	also
	5395	link.
	5396
	5397	Mis-typed
	5398	'data.frame'
	5399	as
	5400	'dataframe'.
	5401
	5402	2001-12-07 22:55 warneg
	5403
	5404	* [r44]
	5405	R/rename.vars.R:
	5406	Added
	5407	attribution.
	5408
	5409	2001-12-07 22:49 warneg
	5410
	5411	* [r43]
	5412	man/rename.vars.Rd:
	5413	Added
	5414	proper
	5415	attribution
	5416	to
	5417	Don
	5418	MacQueen.
	5419
	5420	2001-12-07 21:48 warneg
	5421
	5422	* [r39]
	5423	man/rename.vars.Rd:
	5424	Initial
	5425	checkin.
	5426
	5427	Unfortunately,
1648	5428	I've
1649		renamed the clean target to cleanup and distclean target to
1650		clean.
1651
1652		2004-05-25 11:35 warnes
1653
1654		* [r329] R/read.xls.R, man/read.xls.Rd: Add read.xls(), a function
1655		to read Microsoft Excel files by
1656		translating them to csv files via the xls2csv.pl script.
1657
1658		2004-05-25 02:46 warnes
1659
1660		* [r326] inst/tools/Makefile: More fixes. Seems to work now.
1661
1662		2004-05-24 23:46 warnes
1663
1664		* [r325] inst/perl, inst/perl/xls2csv.pl, inst/tools,
1665		inst/tools/Makefile, inst/xls, inst/xls/iris.xls: Add files to
1666		enable inclusion and installation of xls2csv.pl as part
1667		of the package.
1668
1669		2004-04-01 20:23 warnes
1670
1671		* [r312] R/rename.vars.R, man/rename.vars.Rd: Add function
1672		remove.vars().
1673
1674		2004-03-26 22:31 warnes
1675
1676		* [r307] man/reorder.Rd: Contents of package 'mva' moveed to
1677		'stats'.
1678
1679		2004-03-26 22:02 warnes
1680
1681		* [r298] R/is.what.R: - Fix is.what() for use under R 1.9.0
1682		- is.what() now uses is.* functions found in any attached frame
1683
1684		2004-01-21 12:06 warnes
1685
1686		* [r282] R/reorder.R, man/reorder.Rd: - Add ... argument to match
1687		generic provided in mva.
1688
1689		2004-01-19 22:45 warnes
1690
1691		* [r275] R/elem.R, R/env.R, R/ll.R, man/keep.Rd, man/ll.Rd: -
1692		Integrated (partial) patch submitted by Arni Magnusson to clarify
1693		help text.
1694		- Modifed code to use match.arg().
1695
1696		2003-12-15 21:07 warnes
1697
1698		* [r271] R/env.R: - Applied patch from Arni that fixed a bug that
1699		caused env() to crash
1700		if any environment was completely empty
1701
1702		2003-12-03 02:46 warnes
1703
1704		* [r253] man/elem.Rd, man/ll.Rd, trunk/gplots/man/lowess.Rd,
1705		trunk/gplots/man/textplot.Rd, trunk/gplots/man/wapply.Rd,
1706		trunk/gtools/man/foldchange.Rd: - match function argument
1707		defaults with 'usage'
1708
1709		2003-12-02 17:00 warnes
1710
1711		* [r249] man/ll.Rd: Add one argument, to match code.
1712
1713		2003-12-01 15:56 warnes
1714
1715		* [r244] R/elem.R, R/env.R, R/is.what.R, R/keep.R, R/ll.R: - Apply
1716		changes submitted by Arni Magnusson
1717
1718		2003-11-19 14:54 warnes
1719
1720		* [r229] man/env.Rd, man/is.what.Rd, man/keep.Rd, man/ll.Rd:
1721		Changes to pass R CMD check.
1722
1723		2003-11-18 18:45 warnes
1724
1725		* [r224] R/elem.R, R/env.R, R/is.what.R, R/keep.R, R/ll.R,
1726		trunk/gplots/R/overplot.R: - Convert from MS-Dos to Unix line
1727		endings.
1728		- Reformat to 80 columns.
1729
1730		2003-11-17 22:09 warnes
1731
1732		* [r223] man/elem.Rd: Replace 'T' with 'TRUE' to remove R CMD check
1733		error.
1734
1735		2003-11-17 22:09 warnes
1736
1737		* [r222] man/aggregate.table.Rd: Fix syntax error.
1738
1739		2003-11-10 22:11 warnes
1740
1741		* [r220] R/elem.R, R/env.R, R/is.what.R, R/keep.R, R/ll.R,
1742		man/elem.Rd, man/env.Rd, man/is.what.Rd, man/keep.Rd, man/ll.Rd,
1743		trunk/gplots/R/heatmap.2.R, trunk/gplots/R/overplot.R,
1744		trunk/gplots/R/plotmeans.R, trunk/gplots/R/space.R,
1745		trunk/gplots/R/wapply.R, trunk/gregmisc/DESCRIPTION,
1746		trunk/gtools/R/capture.R, trunk/gtools/man/capture.Rd: - Add
1747		files contributed by Arni Magnusson
1748		<arnima@u.washington.edu>. As well as some of my own.
1749
1750		2003-06-07 17:58 warnes
1751
1752		* [r198] man/aggregate.table.Rd, man/interleave.Rd: - Fixed error
1753		in examples. Had sqrt(var(x)/(n-1)) for the standard
1754		error of the mean instead of sqrt(var(x)/n).
1755
1756		2003-05-23 18:32 warnes
1757
1758		* [r197] R/matchcols.R, man/matchcols.Rd: - Fixed typos
1759
1760		2003-05-23 18:14 warnes
1761
1762		* [r196] R/matchcols.R, man/matchcols.Rd, trunk/gtools/R/logit.R,
1763		trunk/gtools/man/logit.Rd: - library() backported from 1.7-devel.
1764		This version of the function
1765		adds the "pos=" argument to specify where in the search path the
1766		library should be placed.
1767
1768		- updated .First.lib to use library(...pos=3) for MASS to avoid
1769		the
1770		'genotype' data set in MASS from masking the genotype funciton in
1771		genetics when it loads gregmisc
1772
1773		- Added logit() inv.logit() matchcols() function and
1774		corresponding docs
1775
1776		2003-05-20 16:03 warnes
1777
1778		* [r195] R/interleave.R: - Omit NULL variables.
1779
1780		2003-05-20 13:16 warnes
1781
1782		* [r194] R/trim.R, man/trim.Rd, trunk/gregmisc/DESCRIPTION: - Added
1783		function trim() and assocated docs.
1784
1785		2003-04-22 15:42 warnes
1786
1787		* [r188] R/reorder.R, man/reorder.Rd: - The mva package (which is
1788		part of recommended) now provides a
1789		generic 'reorder' function. Consequently, the 'reorder' function
1790		here has been renamed to 'reorder.factor'.
1791
1792		- Removed check of whether the argument is a factor object.
1793
1794		2003-03-03 17:48 warnes
1795
1796		* [r165] man/reorder.Rd: - Updated to match reorder.Rd which was
1797		exetended to handle factor
1798		label names in addition to numeric indices.
1799
1800		2003-03-03 17:24 warnes
1801
1802		* [r164] R/reorder.R: - Added handling of factor level names in
1803		addition to numeric indexes.
1804
1805		2002-09-23 14:02 warnes
1806
1807		* [r118] inst, inst/doc, inst/doc/Rnews.dtx, inst/doc/Rnews.sty,
1808		inst/doc/gregmisc.pdf, inst/doc/gregmisc.tex: Added inst/doc
1809		directory and contents to CVS.
1810
1811		2002-09-23 13:59 warnes
1812
1813		* [r117] R/aggregate.table.R, R/combine.R, R/interleave.R,
1814		R/nobs.R, man/aggregate.table.Rd, man/combine.Rd,
1815		man/interleave.Rd, man/nobs.Rd, man/rename.vars.Rd,
1816		man/reorder.Rd, trunk/gmodels/R/ci.R,
1817		trunk/gmodels/man/estimable.Rd, trunk/gmodels/man/glh.test.Rd,
1818		trunk/gplots/R/boxplot.n.R, trunk/gplots/R/hist2d.R,
1819		trunk/gplots/R/lowess.R, trunk/gplots/R/residplot.R,
1820		trunk/gplots/man/bandplot.Rd, trunk/gplots/man/hist2d.Rd,
1821		trunk/gplots/man/lowess.Rd, trunk/gplots/man/plotCI.Rd,
1822		trunk/gplots/man/space.Rd, trunk/gtools/man/combinations.Rd,
1823		trunk/gtools/man/quantcut.Rd: - Modified all files to include CVS
1824		Id and Log tags.
1825
1826		2002-08-01 18:06 warnes
1827
1828		* [r112] R/reorder.R: Added reorder() function to reorder the
1829		levels of a factor.
1830
1831		2002-04-09 00:51 warneg
1832
1833		* [r109] R/rename.vars.R, man/aggregate.table.Rd,
1834		man/interleave.Rd, man/reorder.Rd, trunk/gmodels/R/ci.R,
1835		trunk/gmodels/R/estimable.R, trunk/gmodels/R/glh.test.R,
1836		trunk/gmodels/man/glh.test.Rd, trunk/gplots/R/bandplot.R,
1837		trunk/gplots/R/boxplot.n.R, trunk/gplots/R/hist2d.R,
1838		trunk/gplots/R/plot.lm.R, trunk/gplots/R/plotCI.R,
1839		trunk/gplots/R/plotmeans.R, trunk/gplots/R/residplot.R,
1840		trunk/gplots/R/space.R, trunk/gplots/R/wapply.R,
1841		trunk/gplots/man/bandplot.Rd, trunk/gplots/man/boxplot.n.Rd,
1842		trunk/gplots/man/hist2d.Rd, trunk/gplots/man/plotmeans.Rd,
1843		trunk/gplots/man/space.Rd, trunk/gplots/man/wapply.Rd,
1844		trunk/gregmisc/DESCRIPTION, trunk/gtools/R/combinations.R,
1845		trunk/gtools/man/combinations.Rd, trunk/gtools/man/running.Rd:
1846		Checkin for version 0.5.3
1847
1848		2002-04-09 00:46 warneg
1849
1850		* [r108] R/interleave.R: - Properly handle case when some or all
1851		arguments are vectors.
1852
1853		2002-03-26 21:22 warneg
1854
1855		* [r104] man/reorder.Rd, trunk/gmodels/R/ci.R,
1856		trunk/gmodels/R/glh.test.R, trunk/gmodels/man/ci.Rd,
1857		trunk/gmodels/man/glh.test.Rd, trunk/gplots/R/lowess.R,
1858		trunk/gplots/man/lowess.Rd: - Changed methods to include '...' to
1859		match the generic.
1860		- Updated for version 0.5.1
1861
1862		2002-03-26 19:29 warneg
1863
1864		* [r102] R/nobs.R: Added ... to methods.
1865
1866		2002-03-26 19:29 warneg
1867
1868		* [r101] man/nobs.Rd: Updated to add ... parameter to function
1869		calls.
1870
1871		2002-03-26 15:27 warneg
1872
1873		* [r98] man/reorder.Rd: Initial checkin.
1874
1875		2002-03-26 14:28 warneg
1876
1877		* [r95] R/nobs.R: - Added CVS tags
1878
1879		2002-02-21 21:45 warneg
1880
1881		* [r87] R/aggregate.table.R: - Fixed bug where row and column
1882		labels didn't always correspond to the
1883		contents. This only occured when a factor was used for by1 or by2
1884		and
1885		the factors levels weren't in the default sort order.
1886
1887		2002-02-20 22:10 warneg
1888
1889		* [r86] R/aggregate.table.R: New function.
1890
1891		2002-02-20 22:09 warneg
1892
1893		* [r85] man/aggregate.table.Rd: Initial checkin.
1894
1895		2002-02-20 21:42 warneg
1896
1897		* [r84] R/interleave.R, man/interleave.Rd: Initial checkin.
1898
1899		2002-02-20 21:31 warneg
1900
1901		* [r83] man/nobs.Rd: Noted that specialized methods exist.
1902
1903		2002-02-20 21:29 warneg
1904
1905		* [r82] man/nobs.Rd: Incorrectly had contents of nobs.R here
1906		instead of help text. Corrected.
1907
1908		2002-02-20 20:09 warneg
1909
1910		* [r81] man/rename.vars.Rd, trunk/gmodels/man/ci.Rd,
1911		trunk/gmodels/man/estimable.Rd, trunk/gmodels/man/glh.test.Rd,
1912		trunk/gplots/man/lowess.Rd, trunk/gplots/man/plotCI.Rd,
1913		trunk/gplots/man/space.Rd: Minor changes, typo and formatting
1914		fixes.
1915
1916		2002-02-20 20:03 warneg
1917
1918		* [r79] R/nobs.R, man/nobs.Rd: - initial checkin.
1919
1920		2001-12-12 01:39 warneg
1921
1922		* [r53] man/rename.vars.Rd: Added omitted documentaton for 'info'
1923		parameter. Changed example code
1924		not to use 'Orthodont' data set so that the nlme package is not
1925		required.
1926
1927		2001-12-08 01:54 warneg
1928
1929		* [r47] R/rename.vars.R: Changed 'T' to 'TRUE' in parameter list.
1930
1931		2001-12-07 23:33 warneg
1932
1933		* [r45] man/rename.vars.Rd: - Fixed see also link. Mis-typed
1934		'data.frame' as 'dataframe'.
1935
1936		2001-12-07 22:55 warneg
1937
1938		* [r44] R/rename.vars.R: Added attribution.
1939
1940		2001-12-07 22:49 warneg
1941
1942		* [r43] man/rename.vars.Rd: Added proper attribution to Don
1943		MacQueen.
1944
1945		2001-12-07 21:48 warneg
1946
1947		* [r39] man/rename.vars.Rd: Initial checkin. Unfortunately, I've
1948		lost the email of the person who
1949		sent this to me. I'll credit him/her when I find out who it was!
	5429	lost
	5430	the
	5431	email
	5432	of
	5433	the
	5434	person
	5435	who sent
	5436	this
	5437	to
	5438	me.
	5439
	5440	I'll
	5441	credit
	5442	him/her
	5443	when
	5444	I
	5445	find
	5446	out
	5447	who
	5448	it
	5449	was!
1950	5450
1951	5451	2001-12-07 21:40 warneg
1952	5452
1953		* [r38] R/rename.vars.R: Initial checkin
	5453	* [r38]
	5454	R/rename.vars.R:
	5455	Initial
	5456	checkin
1954	5457
1955	5458	2001-12-05 19:51 warneg
1956	5459
1957		* [r34] R, R/combine.R: - Renamed 'concat' function to 'combine' to
1958		avoid name conflict with
1959		an existing S-Plus function.
	5460	* [r34]
	5461	R,
	5462	R/combine.R:
	5463	-
	5464	Renamed
	5465	'concat'
	5466	function
	5467	to
	5468	'combine'
	5469	to
	5470	avoid
	5471	name
	5472	conflict
	5473	with
	5474
	5475	an
	5476	existing
	5477	S-Plus
	5478	function.
1960	5479
1961	5480	2001-12-05 19:44 warneg
1962	5481
1963		* [r32] ., man, man/combine.Rd: - Changed function name 'concat' to
1964		'combine' and renamed concat.Rd to
	5482	* [r32]
	5483	.,
	5484	man,
	5485	man/combine.Rd:
	5486	-
	5487	Changed
	5488	function
	5489	name
	5490	'concat'
	5491	to
	5492	'combine'
	5493	and
	5494	renamed
	5495	concat.Rd
	5496	to
	5497
1965	5498	combine.Rd
1966	5499

-4

DESCRIPTION less more

2	2	Description: Various R programming tools for data manipulation
3	3	Depends: R (>= 2.6.0)
4	4	Imports: gtools
5		Version: 2.8.1
6		Date: 2010-11-12
	5	Version: 2.8.2
	6	Date: 2011-04-15
7	7	Author: Gregory R. Warnes, with contributions from Ben Bolker, Gregor
8	8	Gorjanc, Gabor Grothendieck, Ales Korosec, Thomas Lumley, Don
9	9	MacQueen, Arni Magnusson, Jim Rogers, and others
10	10	Maintainer: Gregory Warnes <greg@warnes.net>
11	11	License: GPL-2
12		Packaged: 2010-11-12 19:20:23 UTC; warnes
	12	Packaged: 2011-04-16 17:04:20 UTC; warnes
13	13	Repository: CRAN
14		Date/Publication: 2010-11-13 15:19:27
	14	Date/Publication: 2011-04-24 06:08:17

-0

NAMESPACE less more

60	60	importFrom(gtools, mixedsort)
61	61
62	62	S3method(reorder, factor)
	63
	64	S3method(summary, nPairs)
63	65
64	66	## drop.levels stuff
65	67	S3method(drop.levels, default)

+13

-0

NEWS less more

	0	CHANGES IN 2.8.1 (2011-04-15)
	1	-----------------------------
	2
	3	Enhancements:
	4
	5	- nPairs() gains a summary method that shows how many times each variable
	6	is known, while the other variable of a pair is not
	7
	8	Bug fixes:
	9
	10	- Fix errors on windows when R or Perl install path includes spaces by properly quoting the path.
	11
	12
0	13	CHANGES IN 2.8.1 (2010-11-12)
1	14	-----------------------------
2	15

-9

~~R/dQuote.ascii.R~~ less more

0		## s$Id: read.xls.R 1342 2009-07-16 02:49:11Z warnes $
1
2		## Double quote string using ASCII double quotes.
3		##
4		## (The base 'dQuote' uses local-specific quotes (e.g UTF-8 quotes)
5		## which Unix command line doesn't like.)
6		##
7		dQuote.ascii <- function(x) paste('"',x,'"',sep='')
8

-1

R/installXLSXsupport.R less more

23	23	##
24	24	## execution command
25	25
26		cmd <- paste(perl, sc, sep=" ")
	26	cmd <- paste(shQuote(perl), shQuote(sc), sep=" ")
27	27
28	28	##
29	29

+14

-0

R/nPairs.R less more

41	41	colnames(ret) <- tmp
42	42	}
43	43	}
	44	class(ret) <- c("nPairs", class(ret))
	45	ret
	46	}
	47
	48	summary.nPairs <- function(object, ...)
	49	{
	50	n <- nrow(object)
	51	ret <- matrix(data=0, nrow=n, ncol=n)
	52	for(i in 1:n) {
	53	tmp <- 1:n
	54	tmp <- tmp[!(tmp == i)]
	55	ret[i, tmp] <- object[i, i] - object[i, tmp]
	56	}
	57	dimnames(ret) <- dimnames(object)
44	58	ret
45	59	}
46	60

-3

R/read.xls.R less more

0		## s$Id: read.xls.R 1435 2010-05-02 06:11:26Z warnes $
	0	## s$Id: read.xls.R 1468 2011-04-15 20:25:24Z warnes $
1	1
2	2	read.xls <- function(xls, sheet = 1, verbose=FALSE, pattern, ...,
3	3	method=c("csv","tsv","tab"), perl="perl")

32	32	if (missing(pattern))
33	33	{
34	34	if(verbose)
35		cat("Reading", method, "file ", dQuote.ascii(tfn), "...\n")
	35	cat("Reading", method, "file ", dQuote(tfn), "...\n")
36	36
37	37	if(method=="csv")
38	38	retval <- read.csv(con, ...)

58	58	seek(con, 0)
59	59
60	60	if(verbose)
61		cat("Reading", method, "file ", dQuote.ascii(tfn), "...\n")
	61	cat("Reading", method, "file ", dQuote(tfn), "...\n")
62	62
63	63	if(method=="csv")
64	64	retval <- read.csv(con, skip = idx[1]-1, ...)

-4

R/sheetCount.R less more

28	28	tf <- paste(tempfile(), "xls", sep = ".")
29	29	if(verbose)
30	30	cat("Downloading",
31		dQuote.ascii(xls), " to ",
32		dQuote.ascii(tf), "...\n")
	31	dQuote(xls), " to ",
	32	dQuote(tf), "...\n")
33	33	else
34	34	cat("Downloading...\n")
35	35	download.file(xls, tf, mode = "wb")

46	46	##
47	47	## execution command
48	48
49		cmd <- paste(perl, sc, dQuote.ascii(xls), sep=" ")
	49	cmd <- paste(shQuote(perl), shQuote(sc), shQuote(xls), sep=" ")
50	50	##
51	51	##
52	52

56	56	{
57	57	cat("\n")
58	58	cat("Extracting sheet information from\n")
59		cat(" ", dQuote.ascii(xls), "\n")
	59	cat(" ", dQuote(xls), "\n")
60	60	cat("... \n\n")
61	61	}
62	62	##

+10

-10

R/xls2sep.R less more

0		## s$Id: xls2sep.R 1452 2010-10-19 22:04:49Z warnes $
	0	## s$Id: xls2sep.R 1468 2011-04-15 20:25:24Z warnes $
1	1
2	2	xls2csv <- function(xls, sheet=1, verbose=FALSE, ..., perl="perl")
3	3	xls2sep(xls=xls, sheet=sheet, verbose=verbose, ..., method="csv",

37	37	tf <- paste(tempfile(), "xls", sep = ".")
38	38	if(verbose)
39	39	cat("Downloading",
40		dQuote.ascii(xls), " to ",
41		dQuote.ascii(tf), "...\n")
	40	dQuote(xls), " to ",
	41	dQuote(tf), "...\n")
42	42	download.file(xls, tf, mode = "wb")
43	43	if(verbose) cat("Done.\n")
44	44	xls <- tf

69	69
70	70	##
71	71	## execution command
72		cmd <- paste(dQuote.ascii(perl),
73		dQuote.ascii(script),
74		dQuote.ascii(xls),
75		dQuote.ascii(targetFile),
76		dQuote.ascii(sheet),
	72	cmd <- paste(shQuote(perl),
	73	shQuote(script),
	74	shQuote(xls),
	75	shQuote(targetFile),
	76	shQuote(sheet),
77	77	sep=" ")
78	78	##
79	79	##

82	82	{
83	83	cat("\n")
84	84	cat("Converting xls file\n")
85		cat(" ", dQuote.ascii(xls), "\n")
	85	cat(" ", dQuote(xls), "\n")
86	86	cat("to", method, " file \n")
87		cat(" ", dQuote.ascii(targetFile), "\n")
	87	cat(" ", dQuote(targetFile), "\n")
88	88	cat("... \n\n")
89	89	}
90	90

-1

R/xlsFormats.R less more

23	23	##
24	24	## execution command
25	25
26		cmd <- paste(perl, sc, sep=" ")
	26	cmd <- paste(shQuote(perl), shQuote(sc), sep=" ")
27	27
28	28	##
29	29

+10

-0

debian/changelog less more

	0	gdata (2.8.2-1) unstable; urgency=low
	1
	2	* New upstream release
	3
	4	* debian/control: Set (Build-)Depends: to current R version
	5
	6	* debian/control: Package changed to Architecture: all
	7
	8	-- Dirk Eddelbuettel <edd@debian.org> Sun, 24 Apr 2011 21:29:34 -0500
	9
0	10	gdata (2.8.1-1) unstable; urgency=low
1	11
2	12	* New upstream release

-3

debian/control less more

1	1	Section: gnu-r
2	2	Priority: optional
3	3	Maintainer: Dirk Eddelbuettel <edd@debian.org>
4		Build-Depends: cdbs, debhelper (>= 7.0.0), r-base-dev (>= 2.12.0), r-cran-gtools
	4	Build-Depends: cdbs, debhelper (>= 7.0.0), r-base-dev (>= 2.13.0), r-cran-gtools
5	5	Standards-Version: 3.9.1
6	6
7	7	Package: r-cran-gdata
8		Architecture: any
9		Depends: ${shlibs:Depends}, r-base-core (>= 2.12.0), r-cran-gtools
	8	Architecture: all
	9	Depends: r-base-core (>= 2.13.0), r-cran-gtools
10	10	Replaces: r-cran-gregmisc (<= 2.0.7-1)
11	11	Description: GNU R package with data manipulation tools by Greg Warnes et al
12	12	This package of R programming tools was written by Gregory Warnes

+4614

-1081

inst/ChangeLog less more

	0	2011-04-15 20:25 warnes
	1
	2	* [r1468]
	3	R/dQuote.ascii.R,
	4	R/installXLSXsupport.R,
	5	R/read.xls.R,
	6	R/sheetCount.R,
	7	R/xls2sep.R:
	8	Fix
	9	errors
	10	on
	11	windows
	12	when
	13	R
	14	or
	15	Perl
	16	install
	17	path
	18	includes
	19	spaces
	20	by
	21	properly
	22	quoting
	23	the
	24	path.
	25
	26	2011-04-15 19:43 warnes
	27
	28	* [r1467]
	29	R/xlsFormats.R:
	30	Fix
	31	error
	32	in
	33	xlsFormat()
	34	on
	35	windows
	36	when
	37	R
	38	or
	39	Perl
	40	install
	41	path
	42	includes
	43	spaces
	44	by
	45	quoting
	46	the
	47	path.
	48
	49	2011-01-15 21:58 ggorjan
	50
	51	* [r1465]
	52	NAMESPACE,
	53	R/nPairs.R,
	54	inst/NEWS,
	55	inst/unitTests/runit.nPairs.R,
	56	man/nPairs.Rd:
	57	Adding
	58	summary
	59	method
	60	for
	61	nPairs
	62
0	63	2010-11-12 19:14 warnes
1	64
2		* [r1462] inst/NEWS: Update NEWS for gdata 2.8.1
	65	* [r1462]
	66	inst/NEWS:
	67	Update
	68	NEWS
	69	for
	70	gdata
	71	2.8.1
3	72
4	73	2010-11-12 19:09 warnes
5	74
6		* [r1461] DESCRIPTION: Update DEScription file for 2.8.1 release
	75	* [r1461]
	76	DESCRIPTION:
	77	Update
	78	DEScription
	79	file
	80	for
	81	2.8.1
	82	release
7	83
8	84	2010-11-12 19:08 warnes
9	85
10		* [r1460] tests/test.read.xls.Rout.save,
11		tests/tests.write.fwf.Rout.save: Update test output to match
12		latest code
	86	* [r1460]
	87	tests/test.read.xls.Rout.save,
	88	tests/tests.write.fwf.Rout.save:
	89	Update
	90	test
	91	output
	92	to
	93	match
	94	latest
	95	code
13	96
14	97	2010-11-12 19:08 warnes
15	98
16		* [r1459] R/write.fwf.R, man/write.fwf.Rd,
17		tests/test.write.fwf.eol.R: Modify write.fwf() to capture and
18		pass on additional arguments for
19		write.table(). This resolves a bug reported by Jan Wijffels.
	99	* [r1459]
	100	R/write.fwf.R,
	101	man/write.fwf.Rd,
	102	tests/test.write.fwf.eol.R:
	103	Modify
	104	write.fwf()
	105	to
	106	capture
	107	and
	108	pass
	109	on
	110	additional
	111	arguments
	112	for write.table().
	113
	114	This
	115	resolves
	116	a
	117	bug
	118	reported
	119	by
	120	Jan
	121	Wijffels.
20	122
21	123	2010-11-01 00:30 arnima
22	124
23		* [r1453] man/Args.Rd: Minor improvement in Args.Rd help page
	125	* [r1453]
	126	man/Args.Rd:
	127	Minor
	128	improvement
	129	in
	130	Args.Rd
	131	help
	132	page
24	133
25	134	2010-10-19 22:04 warnes
26	135
27		* [r1452] R/onAttach.R, R/xls2sep.R: Avoid use of file.access()
28		which is unreliable on Windows network shares.
	136	* [r1452]
	137	R/onAttach.R,
	138	R/xls2sep.R:
	139	Avoid
	140	use
	141	of
	142	file.access()
	143	which
	144	is
	145	unreliable
	146	on
	147	Windows
	148	network
	149	shares.
29	150
30	151	2010-07-08 12:36 ggrothendieck2
31	152
32		* [r1448] R/xls2sep.R: findPerl call added to xls2sep
	153	* [r1448]
	154	R/xls2sep.R:
	155	findPerl
	156	call
	157	added
	158	to
	159	xls2sep
33	160
34	161	2010-07-07 22:48 ggrothendieck2
35	162
36		* [r1447] man/read.xls.Rd: small improvements to read.xls.Rd
	163	* [r1447]
	164	man/read.xls.Rd:
	165	small
	166	improvements
	167	to
	168	read.xls.Rd
37	169
38	170	2010-05-03 16:26 warnes
39	171
40		* [r1439] NAMESPACE, R/installXLSXModules.R,
41		R/installXLSXsupport.R, R/onAttach.R, inst/NEWS,
42		man/installXLSXsupport.Rd, man/xlsFormats.Rd: Rename
43		installXLSXModules() to installXLSXsupport() and provide
44		documentation for it.
	172	* [r1439]
	173	NAMESPACE,
	174	R/installXLSXModules.R,
	175	R/installXLSXsupport.R,
	176	R/onAttach.R,
	177	inst/NEWS,
	178	man/installXLSXsupport.Rd,
	179	man/xlsFormats.Rd:
	180	Rename
	181	installXLSXModules()
	182	to
	183	installXLSXsupport()
	184	and
	185	provide
	186	documentation
	187	for
	188	it.
45	189
46	190	2010-05-03 13:48 warnes
47	191
48		* [r1438] inst/NEWS: Update news for gdata 2.8.0
	192	* [r1438]
	193	inst/NEWS:
	194	Update
	195	news
	196	for
	197	gdata
	198	2.8.0
49	199
50	200	2010-05-03 13:35 warnes
51	201
52		* [r1437] DESCRIPTION, NAMESPACE, R/installXLSXModules.R,
53		R/onAttach.R, inst/perl/install_modules.pl,
54		inst/perl/module_tools.pl, tests/test.read.xls.R: Add .onAttach
55		function to check & inform user if perl is available, to check
56		whether XLS and XLSX formats are avaiable, and to run the (new)
57		installXLSXModules() functon to attempt to install the necessar
58		libraries if not. Added installXLSXModules() function.
	202	* [r1437]
	203	DESCRIPTION,
	204	NAMESPACE,
	205	R/installXLSXModules.R,
	206	R/onAttach.R,
	207	inst/perl/install_modules.pl,
	208	inst/perl/module_tools.pl,
	209	tests/test.read.xls.R:
	210	Add
	211	.onAttach
	212	function
	213	to
	214	check
	215	&
	216	inform
	217	user
	218	if
	219	perl
	220	is
	221	available,
	222	to
	223	check
	224	whether
	225	XLS
	226	and
	227	XLSX
	228	formats
	229	are
	230	avaiable,
	231	and
	232	to
	233	run
	234	the
	235	(new)
	236	installXLSXModules()
	237	functon
	238	to
	239	attempt
	240	to
	241	install
	242	the
	243	necessar
	244	libraries
	245	if
	246	not.
	247
	248	Added
	249
	250	installXLSXModules()
	251	function.
59	252
60	253	2010-05-02 13:56 warnes
61	254
62		* [r1436] man/xlsFormats.Rd: Correct error in xlsFormat example
	255	* [r1436]
	256	man/xlsFormats.Rd:
	257	Correct
	258	error
	259	in
	260	xlsFormat
	261	example
63	262
64	263	2010-05-02 06:11 warnes
65	264
66		* [r1435] DESCRIPTION, NAMESPACE, R/dQuote.ascii.R, R/findPerl.R,
67		R/read.xls.R, R/xlsFormats.R, inst/doc/gregmisc.tex,
68		inst/perl/install_modules.pl, inst/perl/module_tools.pl,
69		inst/perl/sheetCount.pl, inst/perl/supportedFormats.pl,
70		inst/perl/xls2csv.pl, man/ConvertMedUnits.Rd,
71		man/aggregate.table.Rd, man/combine.Rd, man/interleave.Rd,
72		man/matchcols.Rd, man/nobs.Rd, man/read.xls.Rd,
73		man/rename.vars.Rd, man/reorder.Rd, man/resample.Rd,
74		man/sheetCount.Rd, man/trim.Rd, man/unmatrix.Rd,
75		man/upperTriangle.Rd, man/xlsFormats.Rd, src,
76		tests/test.read.xls.R, tests/test.read.xls.Rout.save,
77		tests/tests.write.fwf.Rout.save: Update perl code to work (but
78		generate warnings) when Zlib or SpreadSheet::XLXS is not
79		instaled. Also update Greg's email address
	265	* [r1435]
	266	DESCRIPTION,
	267	NAMESPACE,
	268	R/dQuote.ascii.R,
	269	R/findPerl.R,
	270	R/read.xls.R,
	271	R/xlsFormats.R,
	272	inst/doc/gregmisc.tex,
	273	inst/perl/install_modules.pl,
	274	inst/perl/module_tools.pl,
	275	inst/perl/sheetCount.pl,
	276	inst/perl/supportedFormats.pl,
	277	inst/perl/xls2csv.pl,
	278	man/ConvertMedUnits.Rd,
	279	man/aggregate.table.Rd,
	280	man/combine.Rd,
	281	man/interleave.Rd,
	282	man/matchcols.Rd,
	283	man/nobs.Rd,
	284	man/read.xls.Rd,
	285	man/rename.vars.Rd,
	286	man/reorder.Rd,
	287	man/resample.Rd,
	288	man/sheetCount.Rd,
	289	man/trim.Rd,
	290	man/unmatrix.Rd,
	291	man/upperTriangle.Rd,
	292	man/xlsFormats.Rd,
	293	src,
	294	tests/test.read.xls.R,
	295	tests/test.read.xls.Rout.save,
	296	tests/tests.write.fwf.Rout.save:
	297	Update
	298	perl
	299	code
	300	to
	301	work
	302	(but
	303	generate
	304	warnings)
	305	when
	306	Zlib
	307	or
	308	SpreadSheet::XLXS
	309	is
	310	not
	311	instaled.
	312
	313	Also
	314	update
	315	Greg's
	316	email
	317	address
80	318
81	319	2010-02-21 17:12 ggrothendieck2
82	320
83		* [r1423] R/read.xls.R, man/read.xls.Rd: isOpen problems fixed
84		(isOpen must have changed in R since this worked in earlier
85		versions). Also nba.xls link in read.xls.Rd disappeared. Replaced
86		with similar link.
	321	* [r1423]
	322	R/read.xls.R,
	323	man/read.xls.Rd:
	324	isOpen
	325	problems
	326	fixed
	327	(isOpen
	328	must
	329	have
	330	changed
	331	in
	332	R
	333	since
	334	this
	335	worked
	336	in
	337	earlier
	338	versions).
	339
	340	Also
	341	nba.xls
	342	link
	343	in
	344	read.xls.Rd
	345	disappeared.
	346	Replaced
	347	with
	348	similar
	349	link.
87	350
88	351	2010-02-20 11:32 ggrothendieck2
89	352
90		* [r1422] INSTALL: improved INSTALL file
	353	* [r1422]
	354	INSTALL:
	355	improved
	356	INSTALL
	357	file
91	358
92	359	2010-02-19 15:36 ggrothendieck2
93	360
94		* [r1421] INSTALL, R/dQuote.ascii.R, R/read.xls.R, R/sheetCount.R,
95		inst/NEWS: added findPerl to locate ActiveState Perl on Windows
96		if perl= not specified and Rtools perl would have otherwise been
97		used. Also added INSTALL file.
	361	* [r1421]
	362	INSTALL,
	363	R/dQuote.ascii.R,
	364	R/read.xls.R,
	365	R/sheetCount.R,
	366	inst/NEWS:
	367	added
	368	findPerl
	369	to
	370	locate
	371	ActiveState
	372	Perl
	373	on
	374	Windows
	375	if
	376	perl=
	377	not
	378	specified
	379	and
	380	Rtools
	381	perl
	382	would
	383	have
	384	otherwise
	385	been
	386	used.
	387
	388	Also
	389	added
	390	INSTALL
	391	file.
98	392
99	393	2010-01-28 19:58 warnes
100	394
101		* [r1419] DESCRIPTION, inst/NEWS: Update for release 2.7.1
	395	* [r1419]
	396	DESCRIPTION,
	397	inst/NEWS:
	398	Update
	399	for
	400	release
	401	2.7.1
102	402
103	403	2010-01-28 19:56 warnes
104	404
105		* [r1418] R/xls2sep.R: xls2sep(): Show output of perl call when
	405	* [r1418]
	406	R/xls2sep.R:
	407	xls2sep():
	408	Show
	409	output
	410	of
	411	perl
	412	call
	413	when
106	414	verbose=T
107	415
108	416	2010-01-28 16:43 warnes
109	417
110		* [r1417] src/build.bat: More Win32 fixes
	418	* [r1417]
	419	src/build.bat:
	420	More
	421	Win32
	422	fixes
111	423
112	424	2010-01-28 16:00 warnes
113	425
114		* [r1416] src/Makefile, src/Makefile.win, src/build.bat: More work
115		on Win32 building
	426	* [r1416]
	427	src/Makefile,
	428	src/Makefile.win,
	429	src/build.bat:
	430	More
	431	work
	432	on
	433	Win32
	434	building
116	435
117	436	2010-01-28 03:58 warnes
118	437
119		* [r1415] src/Makefile, src/Makefile.win, src/build.bat: Support
120		building Compress::Raw::Zlib perl package under windows.
	438	* [r1415]
	439	src/Makefile,
	440	src/Makefile.win,
	441	src/build.bat:
	442	Support
	443	building
	444	Compress::Raw::Zlib
	445	perl
	446	package
	447	under
	448	windows.
121	449
122	450	2010-01-26 04:12 warnes
123	451
124		* [r1413] inst/NEWS: Fix typos
	452	* [r1413]
	453	inst/NEWS:
	454	Fix
	455	typos
125	456
126	457	2010-01-26 04:11 warnes
127	458
128		* [r1412] R/sheetCount.R: Show more details in sheetCount() when
	459	* [r1412]
	460	R/sheetCount.R:
	461	Show
	462	more
	463	details
	464	in
	465	sheetCount()
	466	when
129	467	verbose=TRUE
130	468
131	469	2010-01-24 23:30 warnes
132	470
133		* [r1411] R/xls2sep.R: Replace two calls to 'dQuote', to
	471	* [r1411]
	472	R/xls2sep.R:
	473	Replace
	474	two
	475	calls
	476	to
	477	'dQuote',
	478	to
134	479	'dQuote.ascii'
135	480
136	481	2010-01-24 19:25 warnes
137	482
138		* [r1408] inst/doc/mapLevels.pdf, inst/doc/unknown.pdf: Remove
139		auto-generated pdf files from svn
	483	* [r1408]
	484	inst/doc/mapLevels.pdf,
	485	inst/doc/unknown.pdf:
	486	Remove
	487	auto-generated
	488	pdf
	489	files
	490	from
	491	svn
140	492
141	493	2010-01-24 19:18 warnes
142	494
143		* [r1407] src/Makefile: create 'distclean' to remove perl binary
144		dir, currently mac-only
	495	* [r1407]
	496	src/Makefile:
	497	create
	498	'distclean'
	499	to
	500	remove
	501	perl
	502	binary
	503	dir,
	504	currently
	505	mac-only
145	506
146	507	2010-01-24 19:13 warnes
147	508
148		* [r1406] R/read.xls.R, R/xls2sep.R: Make read.xls() and xls2sep()
149		quieter when verbose=FALSE
	509	* [r1406]
	510	R/read.xls.R,
	511	R/xls2sep.R:
	512	Make
	513	read.xls()
	514	and
	515	xls2sep()
	516	quieter
	517	when
	518	verbose=FALSE
150	519
151	520	2010-01-24 19:12 warnes
152	521
153		* [r1405] tests/test.read.xls.R, tests/test.read.xls.Rout.save: Add
154		tests for read.xls, sheetCount, and sheetNames
	522	* [r1405]
	523	tests/test.read.xls.R,
	524	tests/test.read.xls.Rout.save:
	525	Add
	526	tests
	527	for
	528	read.xls,
	529	sheetCount,
	530	and
	531	sheetNames
155	532
156	533	2010-01-24 18:22 warnes
157	534
158		* [r1404] src/Makefile: Modify makefile to 1) clean up after build,
159		2) make tar non-verbose
	535	* [r1404]
	536	src/Makefile:
	537	Modify
	538	makefile
	539	to
	540	1)
	541	clean
	542	up
	543	after
	544	build,
	545	2)
	546	make
	547	tar
	548	non-verbose
160	549
161	550	2010-01-24 18:19 warnes
162	551
163		* [r1403] R/read.xls.R, R/sheetCount.R: Close connections when
	552	* [r1403]
	553	R/read.xls.R,
	554	R/sheetCount.R:
	555	Close
	556	connections
	557	when
164	558	done.
165	559
166	560	2010-01-24 18:17 warnes
167	561
168		* [r1402] man/read.xls.Rd: Fix typo
	562	* [r1402]
	563	man/read.xls.Rd:
	564	Fix
	565	typo
169	566
170	567	2010-01-24 18:10 warnes
171	568
172		* [r1401] man/read.xls.Rd, man/sheetNames.Rd: Fix R CMD CHECK
	569	* [r1401]
	570	man/read.xls.Rd,
	571	man/sheetNames.Rd:
	572	Fix
	573	R
	574	CMD
	575	CHECK
173	576	errors
174	577
175	578	2010-01-24 08:47 warnes
176	579
177		* [r1400] src/Compress-Raw-Zlib-2.024,
178		src/Compress-Raw-Zlib-2.024.tar.gz, src/Makefile: Use the
179		original gz file for Compress::Raw::Zlib to avoid issues with
180		'non-platform-independent' filename error in R CMD CHECK
	580	* [r1400]
	581	src/Compress-Raw-Zlib-2.024,
	582	src/Compress-Raw-Zlib-2.024.tar.gz,
	583	src/Makefile:
	584	Use
	585	the
	586	original
	587	gz
	588	file
	589	for
	590	Compress::Raw::Zlib
	591	to
	592	avoid
	593	issues
	594	with
	595	'non-platform-independent'
	596	filename
	597	error
	598	in
	599	R
	600	CMD
	601	CHECK
181	602
182	603	2010-01-24 08:38 warnes
183	604
184		* [r1399] inst/perl/Archive/README-Archive-Zip,
185		inst/perl/Archive/README-Archive::Zip: Rename files to remove R
186		CMD check error
	605	* [r1399]
	606	inst/perl/Archive/README-Archive-Zip,
	607	inst/perl/Archive/README-Archive::Zip:
	608	Rename
	609	files
	610	to
	611	remove
	612	R
	613	CMD
	614	check
	615	error
187	616
188	617	2010-01-24 08:33 warnes
189	618
190		* [r1398] DESCRIPTION, inst/NEWS, inst/doc/mapLevels.pdf,
191		inst/doc/unknown.pdf: Update for 2.7.0 release
	619	* [r1398]
	620	DESCRIPTION,
	621	inst/NEWS,
	622	inst/doc/mapLevels.pdf,
	623	inst/doc/unknown.pdf:
	624	Update
	625	for
	626	2.7.0
	627	release
192	628
193	629	2010-01-24 08:21 warnes
194	630
195		* [r1397] NAMESPACE: Add new functions to NAMESPACE
	631	* [r1397]
	632	NAMESPACE:
	633	Add
	634	new
	635	functions
	636	to
	637	NAMESPACE
196	638
197	639	2010-01-24 08:19 warnes
198	640
199		* [r1396] src, src/Compress-Raw-Zlib-2.024,
	641	* [r1396]
	642	src,
	643	src/Compress-Raw-Zlib-2.024,
200	644	src/Compress-Raw-Zlib-2.024/Changes,
201	645	src/Compress-Raw-Zlib-2.024/MANIFEST,
202	646	src/Compress-Raw-Zlib-2.024/META.yml,

255	699	src/Compress-Raw-Zlib-2.024/zlib-src/zconf.h,
256	700	src/Compress-Raw-Zlib-2.024/zlib-src/zlib.h,
257	701	src/Compress-Raw-Zlib-2.024/zlib-src/zutil.c,
258		src/Compress-Raw-Zlib-2.024/zlib-src/zutil.h, src/Makefile: Add
259		Compress::Raw::Zlib code
	702	src/Compress-Raw-Zlib-2.024/zlib-src/zutil.h,
	703	src/Makefile:
	704	Add
	705	Compress::Raw::Zlib
	706	code
260	707
261	708	2010-01-24 08:15 warnes
262	709
263		* [r1395] man/read.xls.Rd, man/sheetCount.Rd: Add/Update
	710	* [r1395]
	711	man/read.xls.Rd,
	712	man/sheetCount.Rd:
	713	Add/Update
264	714	documentation
265	715
266	716	2010-01-24 08:06 warnes
267	717
268		* [r1394] R/xls2sep.R: Minor formatting change
	718	* [r1394]
	719	R/xls2sep.R:
	720	Minor
	721	formatting
	722	change
269	723
270	724	2010-01-24 07:54 warnes
271	725
272		* [r1393] inst/xls/ExampleExcelFile.xls,
273		inst/xls/ExampleExcelFile.xlsx: Add additional example files
	726	* [r1393]
	727	inst/xls/ExampleExcelFile.xls,
	728	inst/xls/ExampleExcelFile.xlsx:
	729	Add
	730	additional
	731	example
	732	files
274	733
275	734	2010-01-24 07:49 warnes
276	735
277		* [r1392] inst/perl/sheetCount.pl, inst/perl/sheetNames.pl,
278		inst/perl/xls2csv.pl: Combine sheetCount.pl and sheetNames.pl and
279		modify to support Excel 2007 'xlsx' format
	736	* [r1392]
	737	inst/perl/sheetCount.pl,
	738	inst/perl/sheetNames.pl,
	739	inst/perl/xls2csv.pl:
	740	Combine
	741	sheetCount.pl
	742	and
	743	sheetNames.pl
	744	and
	745	modify
	746	to
	747	support
	748	Excel
	749	2007
	750	'xlsx'
	751	format
280	752
281	753	2010-01-24 07:26 warnes
282	754
283		* [r1391] inst/perl/Spreadsheet/XLSX.pm,
284		inst/perl/Spreadsheet/XLSX/Fmt2007.pm, inst/perl/xls2csv.pl:
285		Complete changes to handle Excel 2007 'xlsx' files
	755	* [r1391]
	756	inst/perl/Spreadsheet/XLSX.pm,
	757	inst/perl/Spreadsheet/XLSX/Fmt2007.pm,
	758	inst/perl/xls2csv.pl:
	759	Complete
	760	changes
	761	to
	762	handle
	763	Excel
	764	2007
	765	'xlsx'
	766	files
286	767
287	768	2010-01-24 05:36 warnes
288	769
289		* [r1390] inst/perl/Archive, inst/perl/Archive/README-Archive::Zip,
290		inst/perl/Archive/Zip, inst/perl/Archive/Zip.pm,
	770	* [r1390]
	771	inst/perl/Archive,
	772	inst/perl/Archive/README-Archive::Zip,
	773	inst/perl/Archive/Zip,
	774	inst/perl/Archive/Zip.pm,
291	775	inst/perl/Archive/Zip/Archive.pm,
292	776	inst/perl/Archive/Zip/BufferedFileHandle.pm,
293	777	inst/perl/Archive/Zip/DirectoryMember.pm,

302	786	inst/perl/Archive/Zip/ZipFileMember.pm,
303	787	inst/perl/OLE/README-OLE-Storage_Lite,
304	788	inst/perl/Spreadsheet/README-ParseExcel,
305		inst/perl/Spreadsheet/README-XLS, inst/perl/Spreadsheet/XLSX,
	789	inst/perl/Spreadsheet/README-XLS,
	790	inst/perl/Spreadsheet/XLSX,
306	791	inst/perl/Spreadsheet/XLSX.pm,
307	792	inst/perl/Spreadsheet/XLSX/Fmt2007.pm,
308		inst/perl/Spreadsheet/XLSX/Utility2007.pm, inst/perl/VERSIONS:
309		Add additional Perl modules to support Excel 2007 'xlsx' files
	793	inst/perl/Spreadsheet/XLSX/Utility2007.pm,
	794	inst/perl/VERSIONS:
	795	Add
	796	additional
	797	Perl
	798	modules
	799	to
	800	support
	801	Excel
	802	2007
	803	'xlsx'
	804	files
310	805
311	806	2010-01-24 02:28 ggrothendieck2
312	807
313		* [r1389] NAMESPACE, man/sheetNames.Rd: added sheetNames.Rd
314		(documenting sheetNames/sheetCount) and updated NAMESPACE file.
	808	* [r1389]
	809	NAMESPACE,
	810	man/sheetNames.Rd:
	811	added
	812	sheetNames.Rd
	813	(documenting
	814	sheetNames/sheetCount)
	815	and
	816	updated
	817	NAMESPACE
	818	file.
315	819
316	820	2010-01-24 02:05 ggrothendieck2
317	821
318		* [r1388] inst/NEWS: fixed spacing problem in NEWS
	822	* [r1388]
	823	inst/NEWS:
	824	fixed
	825	spacing
	826	problem
	827	in
	828	NEWS
319	829
320	830	2010-01-23 07:11 warnes
321	831
322		* [r1387] inst/perl/xls2csv.pl: Check if parsing the xls file
323		succeeds... Current code doesn't handle new XML-based format
	832	* [r1387]
	833	inst/perl/xls2csv.pl:
	834	Check
	835	if
	836	parsing
	837	the
	838	xls
	839	file
	840	succeeds...
	841
	842	Current
	843	code
	844	doesn't
	845	handle
	846	new
	847	XML-based
	848	format
324	849
325	850	2010-01-23 07:09 warnes
326	851
327		* [r1386] inst/perl/Spreadsheet/XLSX: Remove perl
328		'Spreadsheet:XLSX' module since it depends on Compress-Raw-Zlib,
329		which probably won't be available on most machines, and I don't
330		have time to figure out how to get R to build it properly when
331		gdata is installed.
	852	* [r1386]
	853	inst/perl/Spreadsheet/XLSX:
	854	Remove
	855
	856	perl
	857	'Spreadsheet:XLSX'
	858	module
	859	since
	860	it
	861	depends
	862	on
	863	Compress-Raw-Zlib,
	864	which
	865	probably
	866	won't
	867	be
	868	available
	869	on
	870	most
	871	machines,
	872	and
	873	I
	874	don't
	875	have
	876	time
	877	to
	878	figure
	879	out
	880	how
	881	to
	882	get
	883	R
	884	to
	885	build
	886	it
	887	properly
	888	when
	889	gdata
	890	is
	891	installed.
332	892
333	893	2010-01-23 06:49 warnes
334	894
335		* [r1385] inst/perl/Spreadsheet/XLSX,
	895	* [r1385]
	896	inst/perl/Spreadsheet/XLSX,
336	897	inst/perl/Spreadsheet/XLSX/Fmt2007.pm,
337		inst/perl/Spreadsheet/XLSX/Utility2007.pm: Add perl
338		'Spreadsheet:XLSX' module to support new Excel XML format files
	898	inst/perl/Spreadsheet/XLSX/Utility2007.pm:
	899	Add
	900	perl
	901	'Spreadsheet:XLSX'
	902	module
	903	to
	904	support
	905	new
	906	Excel
	907	XML
	908	format
	909	files
339	910
340	911	2010-01-23 05:51 warnes
341	912
342		* [r1384] R/xls2sep.R: Add xls2tsv() convenience wrapper to
	913	* [r1384]
	914	R/xls2sep.R:
	915	Add
	916	xls2tsv()
	917	convenience
	918	wrapper
	919	to
343	920	xls2sep()
344	921
345	922	2010-01-23 05:50 warnes
346	923
347		* [r1383] R/read.xls.R, R/xls2sep.R: Update to match new xls2csv.pl
348		code, allow specification of sheets by name, support CSV and TAB
349		delimited files using the same code, other minor changes.
	924	* [r1383]
	925	R/read.xls.R,
	926	R/xls2sep.R:
	927	Update
	928	to
	929	match
	930	new
	931	xls2csv.pl
	932	code,
	933	allow
	934	specification
	935	of
	936	sheets
	937	by
	938	name,
	939	support
	940	CSV
	941	and
	942	TAB
	943	delimited
	944	files
	945	using
	946	the
	947	same
	948	code,
	949	other
	950	minor
	951	changes.
350	952
351	953	2010-01-23 05:45 warnes
352	954
353		* [r1382] R/sheetCount.R: Add sheetNames() function to extract the
354		names from XLS files
	955	* [r1382]
	956	R/sheetCount.R:
	957	Add
	958	sheetNames()
	959	function
	960	to
	961	extract
	962	the
	963	names
	964	from
	965	XLS
	966	files
355	967
356	968	2010-01-23 05:23 warnes
357	969
358		* [r1381] inst/bin/xls2csv.bat: Fix xls2csv.bat
	970	* [r1381]
	971	inst/bin/xls2csv.bat:
	972	Fix
	973	xls2csv.bat
359	974
360	975	2010-01-23 05:17 warnes
361	976
362		* [r1380] inst/perl/xls2csv.pl: If only one sheet is present in the
363		file, don't insert the sheet name into the filename
	977	* [r1380]
	978	inst/perl/xls2csv.pl:
	979	If
	980	only
	981	one
	982	sheet
	983	is
	984	present
	985	in
	986	the
	987	file,
	988	don't
	989	insert
	990	the
	991	sheet
	992	name
	993	into
	994	the
	995	filename
364	996
365	997	2010-01-23 04:38 warnes
366	998
367		* [r1379] inst/xls/ExampleExcelFile.xls,
368		inst/xls/ExampleExcelFile.xlsx: Add additional test/example Excel
	999	* [r1379]
	1000	inst/xls/ExampleExcelFile.xls,
	1001	inst/xls/ExampleExcelFile.xlsx:
	1002	Add
	1003	additional
	1004	test/example
	1005	Excel
369	1006	files
370	1007
371	1008	2010-01-23 04:34 warnes
372	1009
373		* [r1378] inst/perl/xls2csv.pl, inst/perl/xls2tab.pl,
374		inst/perl/xls2tsv.pl: Modify xls2csv.pl script to:
375		- Use tab-delimiter and .tsv or .tab extension if called with the
	1010	* [r1378]
	1011	inst/perl/xls2csv.pl,
	1012	inst/perl/xls2tab.pl,
	1013	inst/perl/xls2tsv.pl:
	1014	Modify
	1015	xls2csv.pl
	1016	script
	1017	to: -
	1018	Use
	1019	tab-delimiter
	1020	and
	1021	.tsv
	1022	or
	1023	.tab
	1024	extension
	1025	if
	1026	called
	1027	with
	1028	the
376	1029	name
377		xls2tsv.pl or xls2tab.pl, respectively. This allows a single
	1030
	1031	xls2tsv.pl
	1032	or
	1033	xls2tab.pl,
	1034	respectively.
	1035
	1036	This
	1037	allows
	1038	a
	1039	single
378	1040	source
379		file and two symlinks to be used intstead of maintaining several
380		almost-identical files.
381		- Allow selection of sheets by name
382		- Provide better error checking
383		- Other code improvements
	1041
	1042	file
	1043	and
	1044	two
	1045	symlinks
	1046	to
	1047	be
	1048	used
	1049	intstead
	1050	of
	1051	maintaining
	1052	several
	1053
	1054	almost-identical
	1055	files. -
	1056	Allow
	1057	selection
	1058	of
	1059	sheets
	1060	by
	1061	name -
	1062	Provide
	1063	better
	1064	error
	1065	checking -
	1066	Other
	1067	code
	1068	improvements
384	1069
385	1070	2010-01-23 02:30 warnes
386	1071
387		* [r1377] inst/perl/sheetCount.pl, inst/perl/sheetNames.pl: Add
388		perl scripts to extract worksheet names and sheet count from
389		Excel files
	1072	* [r1377]
	1073	inst/perl/sheetCount.pl,
	1074	inst/perl/sheetNames.pl:
	1075	Add
	1076	perl
	1077	scripts
	1078	to
	1079	extract
	1080	worksheet
	1081	names
	1082	and
	1083	sheet
	1084	count
	1085	from
	1086	Excel
	1087	files
390	1088
391	1089	2010-01-22 19:35 warnes
392	1090
393		* [r1376] inst/perl/OLE/Storage_Lite.pm: Upgrade Perl
394		OLE::StorageLight module to version 0.19
	1091	* [r1376]
	1092	inst/perl/OLE/Storage_Lite.pm:
	1093	Upgrade
	1094	Perl
	1095	OLE::StorageLight
	1096	module
	1097	to
	1098	version
	1099	0.19
395	1100
396	1101	2010-01-22 19:31 warnes
397	1102
398		* [r1375] inst/perl/Spreadsheet/ParseExcel.pm,
	1103	* [r1375]
	1104	inst/perl/Spreadsheet/ParseExcel.pm,
399	1105	inst/perl/Spreadsheet/ParseExcel/Cell.pm,
400	1106	inst/perl/Spreadsheet/ParseExcel/Dump.pm,
401	1107	inst/perl/Spreadsheet/ParseExcel/FmtDefault.pm,

410	1116	inst/perl/Spreadsheet/ParseExcel/SaveParser/Worksheet.pm,
411	1117	inst/perl/Spreadsheet/ParseExcel/Utility.pm,
412	1118	inst/perl/Spreadsheet/ParseExcel/Workbook.pm,
413		inst/perl/Spreadsheet/ParseExcel/Worksheet.pm: Upgrade perl
414		Spreadsheet::ParseExcel to version 0.56
	1119	inst/perl/Spreadsheet/ParseExcel/Worksheet.pm:
	1120	Upgrade
	1121	perl
	1122	Spreadsheet::ParseExcel
	1123	to
	1124	version
	1125	0.56
415	1126
416	1127	2010-01-22 19:20 warnes
417	1128
418		* [r1374] DESCRIPTION: Add complete list of contributors
	1129	* [r1374]
	1130	DESCRIPTION:
	1131	Add
	1132	complete
	1133	list
	1134	of
	1135	contributors
419	1136
420	1137	2010-01-22 14:00 arnima
421	1138
422		* [r1373] man/keep.Rd: Minor improvement in help page
	1139	* [r1373]
	1140	man/keep.Rd:
	1141	Minor
	1142	improvement
	1143	in
	1144	help
	1145	page
423	1146
424	1147	2010-01-22 13:06 arnima
425	1148
426		* [r1371] R/Args.R, R/env.R, R/is.what.R, R/keep.R, R/ll.R,
427		man/Args.Rd, man/env.Rd, man/is.what.Rd, man/keep.Rd, man/ll.Rd:
428		Many small improvements to documentation of Arni's five functions
	1149	* [r1371]
	1150	R/Args.R,
	1151	R/env.R,
	1152	R/is.what.R,
	1153	R/keep.R,
	1154	R/ll.R,
	1155	man/Args.Rd,
	1156	man/env.Rd,
	1157	man/is.what.Rd,
	1158	man/keep.Rd,
	1159	man/ll.Rd:
	1160	Many
	1161	small
	1162	improvements
	1163	to
	1164	documentation
	1165	of
	1166	Arni's
	1167	five
	1168	functions
429	1169
430	1170	2010-01-22 12:45 warnes
431	1171
432		* [r1370] R/dQuote.ascii.R, R/read.xls.R, R/sheetCount.R,
433		R/xls2sep.R: - Move xls2csv(), xls2tab(), xls2sep() to a separate
	1172	* [r1370]
	1173	R/dQuote.ascii.R,
	1174	R/read.xls.R,
	1175	R/sheetCount.R,
	1176	R/xls2sep.R:
	1177	-
	1178	Move
	1179	xls2csv(),
	1180	xls2tab(),
	1181	xls2sep()
	1182	to
	1183	a
	1184	separate
	1185	file -
	1186	Move
	1187	qQuote.ascii
	1188	to
	1189	a
	1190	separate
	1191	file -
	1192	Bug
	1193	Fix:
	1194	xls2csv(),
	1195	xls2tab()
	1196	failed
	1197	to
	1198	pass
	1199	the
	1200	provided
	1201	'perl'
	1202
	1203	parameter
	1204	to
	1205	xls2sep() -
	1206	New
	1207	Feature:
	1208	xls2sep()
	1209	(and
	1210	hence
	1211	xls2csv,
	1212	xls2tab,
	1213	and
	1214	read.xls)
	1215
	1216	now
	1217	supports
	1218	ftp
	1219	URLs.
	1220
	1221	2009-12-06 22:34 arnima
	1222
	1223	* [r1369]
	1224	R/Args.R,
	1225	man/Args.Rd:
	1226	Minor
	1227	improvements
	1228	of
	1229	Args().
	1230
	1231	2009-12-06 03:12 arnima
	1232
	1233	* [r1368]
	1234	R/ll.R,
	1235	man/ll.Rd:
	1236	Improved
	1237	ll()
	1238	so
	1239	user
	1240	can
	1241	limit
	1242	output
	1243	to
	1244	specified
	1245	classes
	1246
	1247	2009-11-16 12:57 arnima
	1248
	1249	* [r1366]
	1250	R/ll.R:
	1251	ll(.GlobalEnv)
	1252	does
	1253	not
	1254	crash
	1255	anymore
	1256
	1257	2009-08-20 14:54 warnes
	1258
	1259	* [r1357]
	1260	man/cbindX.Rd,
	1261	man/getDateTimePart.Rd,
	1262	man/mapLevels.Rd,
	1263	man/nPairs.Rd,
	1264	man/trim.Rd,
	1265	man/trimSum.Rd,
	1266	man/unknown.Rd,
	1267	man/write.fwf.Rd:
	1268	Replace
	1269	\ldots
	1270	with
	1271	\dots
	1272	to
	1273	make
	1274	the
	1275	new
	1276	R
	1277	CMD
	1278	CHECK
	1279	happy.
	1280
	1281	2009-08-19 17:39 warnes
	1282
	1283	* [r1355]
	1284	DESCRIPTION:
	1285	Update
	1286	for
	1287	2.6.1
	1288	release
	1289
	1290	2009-08-19 17:37 warnes
	1291
	1292	* [r1354]
	1293	inst/unitTests/runit.getDateTimeParts.R:
	1294	Modify
	1295	unit
	1296	tests
	1297	to
	1298	avoid
	1299	issues
	1300	related
	1301	to
	1302	zime
	1303	zones.
	1304
	1305	2009-08-05 01:57 warnes
	1306
	1307	* [r1353]
	1308	inst/doc/mapLevels.pdf,
	1309	inst/doc/unknown.pdf:
	1310	Update
	1311	vignettes
	1312	for
	1313	2.6.0
	1314	release
	1315
	1316	2009-08-05 01:57 warnes
	1317
	1318	* [r1352]
	1319	man/frameApply.Rd:
	1320	Fix
	1321	formatting
	1322	warning
	1323	in
	1324	frameApply
	1325	man
	1326	page
	1327
	1328	2009-07-16 10:55 ggorjan
	1329
	1330	* [r1350]
	1331	man/write.fwf.Rd:
	1332	Reverting
	1333	recent
	1334	change
	1335	and
	1336	clarifying
	1337	the
	1338	meaning.
	1339
	1340	2009-07-16 03:23 warnes
	1341
	1342	* [r1349]
	1343	inst/doc/mapLevels.pdf,
	1344	inst/doc/unknown.pdf,
	1345	man/resample.Rd:
	1346	Add
	1347	contents
	1348	of
	1349	\value
	1350	section
	1351	for
	1352	resample()
	1353	man
	1354	page
	1355
	1356	2009-07-16 03:15 warnes
	1357
	1358	* [r1348]
	1359	tests/tests.write.fwf.Rout.save:
	1360	Update
	1361	test
	1362	output
	1363	to
	1364	remove
	1365	R
	1366	CMD
	1367	check
	1368	warning
	1369
	1370	2009-07-16 03:10 warnes
	1371
	1372	* [r1347]
	1373	inst/NEWS:
	1374	Update
	1375	ChangeLog
	1376	and
	1377	NEWS
	1378	for
	1379	gdata
	1380	2.6.0
	1381	release
	1382
	1383	2009-07-16 02:56 warnes
	1384
	1385	* [r1346]
	1386	DESCRIPTION:
	1387	Update
	1388	DESCRIPTION
434	1389	file
435		- Move qQuote.ascii to a separate file
436
437		- Bug Fix: xls2csv(), xls2tab() failed to pass the provided
438		'perl'
439		parameter to xls2sep()
440
441		- New Feature: xls2sep() (and hence xls2csv, xls2tab, and
442		read.xls)
443		now supports ftp URLs.
444
445		2009-12-06 22:34 arnima
446
447		* [r1369] R/Args.R, man/Args.Rd: Minor improvements of Args().
448
449		2009-12-06 03:12 arnima
450
451		* [r1368] R/ll.R, man/ll.Rd: Improved ll() so user can limit output
452		to specified classes
453
454		2009-11-16 12:57 arnima
455
456		* [r1366] R/ll.R: ll(.GlobalEnv) does not crash anymore
457
458		2009-08-20 14:54 warnes
459
460		* [r1357] man/cbindX.Rd, man/getDateTimePart.Rd, man/mapLevels.Rd,
461		man/nPairs.Rd, man/trim.Rd, man/trimSum.Rd, man/unknown.Rd,
462		man/write.fwf.Rd: Replace \ldots with \dots to make the new R CMD
463		CHECK happy.
464
465		2009-08-19 17:39 warnes
466
467		* [r1355] DESCRIPTION: Update for 2.6.1 release
468
469		2009-08-19 17:37 warnes
470
471		* [r1354] inst/unitTests/runit.getDateTimeParts.R: Modify unit
472		tests to avoid issues related to zime zones.
473
474		2009-08-05 01:57 warnes
475
476		* [r1353] inst/doc/mapLevels.pdf, inst/doc/unknown.pdf: Update
477		vignettes for 2.6.0 release
478
479		2009-08-05 01:57 warnes
480
481		* [r1352] man/frameApply.Rd: Fix formatting warning in frameApply
482		man page
483
484		2009-07-16 10:55 ggorjan
485
486		* [r1350] man/write.fwf.Rd: Reverting recent change and clarifying
487		the meaning.
488
489		2009-07-16 03:23 warnes
490
491		* [r1349] inst/doc/mapLevels.pdf, inst/doc/unknown.pdf,
492		man/resample.Rd: Add contents of \value section for resample()
493		man page
494
495		2009-07-16 03:15 warnes
496
497		* [r1348] tests/tests.write.fwf.Rout.save: Update test output to
498		remove R CMD check warning
499
500		2009-07-16 03:10 warnes
501
502		* [r1347] inst/NEWS: Update ChangeLog and NEWS for gdata 2.6.0
503		release
504
505		2009-07-16 02:56 warnes
506
507		* [r1346] DESCRIPTION: Update DESCRIPTION file for gdata 2.6.0
	1390	for
	1391	gdata
	1392	2.6.0
508	1393
509	1394	2009-07-16 02:55 warnes
510	1395
511		* [r1345] inst/doc/gregmisc.tex, inst/doc/mapLevels.pdf,
512		inst/doc/unknown.pdf, man/ConvertMedUnits.Rd,
513		man/aggregate.table.Rd, man/combine.Rd, man/interleave.Rd,
514		man/matchcols.Rd, man/nobs.Rd, man/rename.vars.Rd,
515		man/reorder.Rd, man/trim.Rd, man/unmatrix.Rd,
516		man/upperTriangle.Rd: Correct Greg's email address
	1396	* [r1345]
	1397	inst/doc/gregmisc.tex,
	1398	inst/doc/mapLevels.pdf,
	1399	inst/doc/unknown.pdf,
	1400	man/ConvertMedUnits.Rd,
	1401	man/aggregate.table.Rd,
	1402	man/combine.Rd,
	1403	man/interleave.Rd,
	1404	man/matchcols.Rd,
	1405	man/nobs.Rd,
	1406	man/rename.vars.Rd,
	1407	man/reorder.Rd,
	1408	man/trim.Rd,
	1409	man/unmatrix.Rd,
	1410	man/upperTriangle.Rd:
	1411	Correct
	1412	Greg's
	1413	email
	1414	address
517	1415
518	1416	2009-07-16 02:52 warnes
519	1417
520		* [r1344] man/write.fwf.Rd: Correct minor typos in write.fwf() man
	1418	* [r1344]
	1419	man/write.fwf.Rd:
	1420	Correct
	1421	minor
	1422	typos
	1423	in
	1424	write.fwf()
	1425	man
521	1426	page
522	1427
523	1428	2009-07-16 02:50 warnes
524	1429
525		* [r1343] man/resample.Rd: Correct page for resample()
	1430	* [r1343]
	1431	man/resample.Rd:
	1432	Correct
	1433	page
	1434	for
	1435	resample()
526	1436
527	1437	2009-07-16 02:49 warnes
528	1438
529		* [r1342] NAMESPACE, R/read.xls.R, inst/perl/xls2tab.pl,
530		man/read.xls.Rd: Add support for using tab for field separator
531		during translation from xls format in read.xls
	1439	* [r1342]
	1440	NAMESPACE,
	1441	R/read.xls.R,
	1442	inst/perl/xls2tab.pl,
	1443	man/read.xls.Rd:
	1444	Add
	1445	support
	1446	for
	1447	using
	1448	tab
	1449	for
	1450	field
	1451	separator
	1452	during
	1453	translation
	1454	from
	1455	xls
	1456	format
	1457	in
	1458	read.xls
532	1459
533	1460	2009-04-19 23:25 arnima
534	1461
535		* [r1314] R/env.R, R/ll.R: Changed object.size(object) to
	1462	* [r1314]
	1463	R/env.R,
	1464	R/ll.R:
	1465	Changed
	1466	object.size(object)
	1467	to
536	1468	unclass(object.size(object)).
537	1469
538	1470	2008-12-31 13:30 ggorjan
539	1471
540		* [r1312] NAMESPACE, inst/NEWS: Documenting changes and exporting
541		the functions.
	1472	* [r1312]
	1473	NAMESPACE,
	1474	inst/NEWS:
	1475	Documenting
	1476	changes
	1477	and
	1478	exporting
	1479	the
	1480	functions.
542	1481
543	1482	2008-12-31 13:30 ggorjan
544	1483
545		* [r1311] R/object.size.R, man/humanReadable.Rd,
546		man/object.size.Rd: Enhanced function object.size that returns
547		the size of multiple objects. There is also a handy print method
548		that can print size of an object in "human readable" format when
549		options(humanReadable=TRUE) or print(object.size(x),
	1484	* [r1311]
	1485	R/object.size.R,
	1486	man/humanReadable.Rd,
	1487	man/object.size.Rd:
	1488	Enhanced
	1489	function
	1490	object.size
	1491	that
	1492	returns
	1493	the
	1494	size
	1495	of
	1496	multiple
	1497	objects.
	1498	There
	1499	is
	1500	also
	1501	a
	1502	handy
	1503	print
	1504	method
	1505	that
	1506	can
	1507	print
	1508	size
	1509	of
	1510	an
	1511	object
	1512	in
	1513	"human
	1514	readable"
	1515	format
	1516	when
	1517	options(humanReadable=TRUE)
	1518	or
	1519	print(object.size(x),
550	1520	humanReadable=TRUE).
551	1521
552	1522	2008-12-31 13:29 ggorjan
553	1523
554		* [r1310] R/wideByFactor.R, inst/unitTests/runit.wideByFactor.R,
555		man/wideByFactor.Rd: New function wideByFactor that reshapes
556		given dataset by a given factor - it creates a "multivariate"
	1524	* [r1310]
	1525	R/wideByFactor.R,
	1526	inst/unitTests/runit.wideByFactor.R,
	1527	man/wideByFactor.Rd:
	1528	New
	1529	function
	1530	wideByFactor
	1531	that
	1532	reshapes
	1533	given
	1534	dataset
	1535	by
	1536	a
	1537	given
	1538	factor
	1539	-
	1540	it
	1541	creates
	1542	a
	1543	"multivariate"
557	1544	data.frame.
558	1545
559	1546	2008-12-31 13:28 ggorjan
560	1547
561		* [r1309] R/nPairs.R, inst/unitTests/runit.nPairs.R, man/nPairs.Rd:
562		New function nPairs that gives the number of variable pairs in a
563		data.frame or a matrix.
	1548	* [r1309]
	1549	R/nPairs.R,
	1550	inst/unitTests/runit.nPairs.R,
	1551	man/nPairs.Rd:
	1552	New
	1553	function
	1554	nPairs
	1555	that
	1556	gives
	1557	the
	1558	number
	1559	of
	1560	variable
	1561	pairs
	1562	in
	1563	a
	1564	data.frame
	1565	or
	1566	a
	1567	matrix.
564	1568
565	1569	2008-12-31 13:26 ggorjan
566	1570
567		* [r1308] R/getDateTimeParts.R,
568		inst/unitTests/runit.getDateTimeParts.R, man/getDateTimePart.Rd:
569		New functions getYear, getMonth, getDay, getHour, getMin, and
570		getSec for extracting the date/time parts from objects of a
571		date/time class.
	1571	* [r1308]
	1572	R/getDateTimeParts.R,
	1573	inst/unitTests/runit.getDateTimeParts.R,
	1574	man/getDateTimePart.Rd:
	1575	New
	1576	functions
	1577	getYear,
	1578	getMonth,
	1579	getDay,
	1580	getHour,
	1581	getMin,
	1582	and
	1583	getSec
	1584	for
	1585	extracting
	1586	the
	1587	date/time
	1588	parts
	1589	from
	1590	objects
	1591	of
	1592	a
	1593	date/time
	1594	class.
572	1595
573	1596	2008-12-31 13:25 ggorjan
574	1597
575		* [r1307] R/bindData.R, inst/unitTests/runit.bindData.R,
576		man/bindData.Rd: New function bindData that binds two data frames
577		into a multivariate data frame in a different way than merge.
	1598	* [r1307]
	1599	R/bindData.R,
	1600	inst/unitTests/runit.bindData.R,
	1601	man/bindData.Rd:
	1602	New
	1603	function
	1604	bindData
	1605	that
	1606	binds
	1607	two
	1608	data
	1609	frames
	1610	into
	1611	a
	1612	multivariate
	1613	data
	1614	frame
	1615	in
	1616	a
	1617	different
	1618	way
	1619	than
	1620	merge.
578	1621
579	1622	2008-12-31 13:24 ggorjan
580	1623
581		* [r1306] R/runRUnitTests.R, inst/unitTests/Makefile,
582		inst/unitTests/runRUnitTests.R, man/gdata-package.Rd,
583		man/runRUnitTests.Rd, tests/doRUnit.R: New function
584		.runRUnitTestsGdata that enables run of all RUnit tests during
585		the R CMD check as well as directly from within R.
	1624	* [r1306]
	1625	R/runRUnitTests.R,
	1626	inst/unitTests/Makefile,
	1627	inst/unitTests/runRUnitTests.R,
	1628	man/gdata-package.Rd,
	1629	man/runRUnitTests.Rd,
	1630	tests/doRUnit.R:
	1631	New
	1632	function
	1633	.runRUnitTestsGdata
	1634	that
	1635	enables
	1636	run
	1637	of
	1638	all
	1639	RUnit
	1640	tests
	1641	during
	1642	the
	1643	R
	1644	CMD
	1645	check
	1646	as
	1647	well
	1648	as
	1649	directly
	1650	from
	1651	within
	1652	R.
586	1653
587	1654	2008-12-20 22:34 ggorjan
588	1655
589		* [r1305] NAMESPACE, R/trimSum.R, inst/NEWS,
590		inst/unitTests/runit.trimSum.R, man/trimSum.Rd:
	1656	* [r1305]
	1657	NAMESPACE,
	1658	R/trimSum.R,
	1659	inst/NEWS,
	1660	inst/unitTests/runit.trimSum.R,
	1661	man/trimSum.Rd:
	1662
591	1663
592	1664	2008-12-20 22:28 ggorjan
593	1665
594		* [r1304] tests/tests.write.fwf.Rout.save: To remove some output in
595		the R CMD check
	1666	* [r1304]
	1667	tests/tests.write.fwf.Rout.save:
	1668	To
	1669	remove
	1670	some
	1671	output
	1672	in
	1673	the
	1674	R
	1675	CMD
	1676	check
596	1677
597	1678	2008-08-05 11:47 ggorjan
598	1679
599		* [r1300] DESCRIPTION, NAMESPACE, R/cbindX.R, R/write.fwf.R,
600		inst/NEWS, inst/doc/mapLevels.pdf, inst/doc/unknown.pdf,
601		inst/unitTests/runit.cbindX.R, inst/unitTests/runit.write.fwf.R,
602		man/cbindX.Rd, man/write.fwf.Rd, tests/tests.write.fwf.R,
603		tests/tests.write.fwf.Rout.save: - Increased version to 2.5.0
604
605		- New function cbindX that can bind objects with different number
606		of rows.
607
608		- write.fwf gains width argument. Unknown values can increase or
	1680	* [r1300]
	1681	DESCRIPTION,
	1682	NAMESPACE,
	1683	R/cbindX.R,
	1684	R/write.fwf.R,
	1685	inst/NEWS,
	1686	inst/doc/mapLevels.pdf,
	1687	inst/doc/unknown.pdf,
	1688	inst/unitTests/runit.cbindX.R,
	1689	inst/unitTests/runit.write.fwf.R,
	1690	man/cbindX.Rd,
	1691	man/write.fwf.Rd,
	1692	tests/tests.write.fwf.R,
	1693	tests/tests.write.fwf.Rout.save:
	1694	-
	1695	Increased
	1696	version
	1697	to
	1698	2.5.0 -
	1699	New
	1700	function
	1701	cbindX
	1702	that
	1703	can
	1704	bind
	1705	objects
	1706	with
	1707	different
	1708	number
	1709	of
	1710	rows. -
	1711	write.fwf
	1712	gains
	1713	width
	1714	argument.
	1715	Unknown
	1716	values
	1717	can
	1718	increase
	1719	or
609	1720	decrease
610		the width of the columns. Additional tests and documentation
	1721
	1722	the
	1723	width
	1724	of
	1725	the
	1726	columns.
	1727	Additional
	1728	tests
	1729	and
	1730	documentation
611	1731	fixes.
612	1732
613	1733	2008-06-30 22:29 arnima
614	1734
615		* [r1299] R/env.R, R/ll.R, man/env.Rd, man/ll.Rd: Simplified
616		default 'unit' argument from c("KB","MB","bytes") to "KB".
	1735	* [r1299]
	1736	R/env.R,
	1737	R/ll.R,
	1738	man/env.Rd,
	1739	man/ll.Rd:
	1740	Simplified
	1741	default
	1742	'unit'
	1743	argument
	1744	from
	1745	c("KB","MB","bytes")
	1746	to
	1747	"KB".
617	1748
618	1749	2008-05-13 03:16 warnes
619	1750
620		* [r1270] inst/NEWS, inst/doc/mapLevels.pdf, inst/doc/unknown.pdf:
621		Update NEWS file for 2.4.2
	1751	* [r1270]
	1752	inst/NEWS,
	1753	inst/doc/mapLevels.pdf,
	1754	inst/doc/unknown.pdf:
	1755	Update
	1756	NEWS
	1757	file
	1758	for
	1759	2.4.2
622	1760
623	1761	2008-05-13 03:09 warnes
624	1762
625		* [r1269] R/read.xls.R: Use path.expand() to give proper full path
626		to xls file to be translated by read.xls()
	1763	* [r1269]
	1764	R/read.xls.R:
	1765	Use
	1766	path.expand()
	1767	to
	1768	give
	1769	proper
	1770	full
	1771	path
	1772	to
	1773	xls
	1774	file
	1775	to
	1776	be
	1777	translated
	1778	by
	1779	read.xls()
627	1780
628	1781	2008-05-13 02:55 warnes
629	1782
630		* [r1268] R/read.xls.R: Modifed read.xls() failed to return the
631		converted data... fixed.
	1783	* [r1268]
	1784	R/read.xls.R:
	1785	Modifed
	1786	read.xls()
	1787	failed
	1788	to
	1789	return
	1790	the
	1791	converted
	1792	data...
	1793	fixed.
632	1794
633	1795	2008-05-13 02:47 warnes
634	1796
635		* [r1267] inst/perl/Spreadsheet/ParseExcel/Utility.pm: Correct
636		broken patch for open-office support
	1797	* [r1267]
	1798	inst/perl/Spreadsheet/ParseExcel/Utility.pm:
	1799	Correct
	1800	broken
	1801	patch
	1802	for
	1803	open-office
	1804	support
637	1805
638	1806	2008-05-13 02:40 warnes
639	1807
640		* [r1266] DESCRIPTION, R/read.xls.R: For read.xls() and xls2csv():
641		- Implement more informative log messages when verbose=TRUE
642		- Quote temporary file name to avoid errors when calling perl to
643		do the work.
644		- Add better error messages, particularly when perl fails to
645		generate an
646		output .csv file.
647
648		Update version number in DESCRIPTION.
	1808	* [r1266]
	1809	DESCRIPTION,
	1810	R/read.xls.R:
	1811	For
	1812	read.xls()
	1813	and
	1814	xls2csv():
	1815
	1816
	1817	-
	1818	Implement
	1819	more
	1820	informative
	1821	log
	1822	messages
	1823	when
	1824	verbose=TRUE
	1825
	1826	-
	1827	Quote
	1828	temporary
	1829	file
	1830	name
	1831	to
	1832	avoid
	1833	errors
	1834	when
	1835	calling
	1836	perl
	1837	to
	1838	do
	1839	the
	1840	work.
	1841
	1842	-
	1843	Add
	1844	better
	1845	error
	1846	messages,
	1847	particularly
	1848	when
	1849	perl
	1850	fails
	1851	to
	1852	generate
	1853	an
	1854
	1855
	1856
	1857	output
	1858	.csv
	1859	file. Update
	1860	version
	1861	number
	1862	in
	1863	DESCRIPTION.
649	1864
650	1865	2008-05-12 00:00 warnes
651	1866
652		* [r1265] inst/perl/Spreadsheet/ParseExcel/Utility.pm: Patch to
653		correct issue with OpenOffice-created XLS files. Thanks to
654		Robert Burns for pointing out the patch at
	1867	* [r1265]
	1868	inst/perl/Spreadsheet/ParseExcel/Utility.pm:
	1869	Patch
	1870	to
	1871	correct
	1872	issue
	1873	with
	1874	OpenOffice-created
	1875	XLS
	1876	files.
	1877
	1878	Thanks
	1879	to Robert
	1880	Burns
	1881	for
	1882	pointing
	1883	out
	1884	the
	1885	patch
	1886	at
655	1887	http://rt.cpan.org/Public/Bug/Display.html?id=7206
656	1888
657	1889	2008-03-25 01:01 warnes
658	1890
659		* [r1250] DESCRIPTION, inst/NEWS, inst/doc/mapLevels.pdf,
660		inst/doc/unknown.pdf: Update for version 2.4.1
	1891	* [r1250]
	1892	DESCRIPTION,
	1893	inst/NEWS,
	1894	inst/doc/mapLevels.pdf,
	1895	inst/doc/unknown.pdf:
	1896	Update
	1897	for
	1898	version
	1899	2.4.1
661	1900
662	1901	2008-03-25 00:57 warnes
663	1902
664		* [r1249] inst/xls/iris.xls: Example iris.xls file didn't complete
665		& properly formatted iris data set. Fixed.
	1903	* [r1249]
	1904	inst/xls/iris.xls:
	1905	Example
	1906	iris.xls
	1907	file
	1908	didn't
	1909	complete
	1910	&
	1911	properly
	1912	formatted
	1913	iris
	1914	data
	1915	set.
	1916	Fixed.
666	1917
667	1918	2008-03-25 00:51 warnes
668	1919
669		* [r1248] inst/perl/IO/AtomicFile.pm, inst/perl/IO/InnerFile.pm,
670		inst/perl/IO/Lines.pm, inst/perl/IO/Scalar.pm,
671		inst/perl/IO/ScalarArray.pm, inst/perl/IO/Stringy.pm,
672		inst/perl/IO/Wrap.pm, inst/perl/IO/WrapTie.pm,
	1920	* [r1248]
	1921	inst/perl/IO/AtomicFile.pm,
	1922	inst/perl/IO/InnerFile.pm,
	1923	inst/perl/IO/Lines.pm,
	1924	inst/perl/IO/Scalar.pm,
	1925	inst/perl/IO/ScalarArray.pm,
	1926	inst/perl/IO/Stringy.pm,
	1927	inst/perl/IO/Wrap.pm,
	1928	inst/perl/IO/WrapTie.pm,
673	1929	inst/perl/OLE/Storage_Lite.pm,
674	1930	inst/perl/Spreadsheet/ParseExcel.pm,
675	1931	inst/perl/Spreadsheet/ParseExcel/Dump.pm,

678	1934	inst/perl/Spreadsheet/ParseExcel/FmtJapan2.pm,
679	1935	inst/perl/Spreadsheet/ParseExcel/FmtUnicode.pm,
680	1936	inst/perl/Spreadsheet/ParseExcel/SaveParser.pm,
681		inst/perl/Spreadsheet/ParseExcel/Utility.pm: Update perl modules
682		to latest versions
	1937	inst/perl/Spreadsheet/ParseExcel/Utility.pm:
	1938	Update
	1939	perl
	1940	modules
	1941	to
	1942	latest
	1943	versions
683	1944
684	1945	2008-03-24 23:56 warnes
685	1946
686		* [r1247] man/read.xls.Rd: Fix typo in win32 example for read.xls()
	1947	* [r1247]
	1948	man/read.xls.Rd:
	1949	Fix
	1950	typo
	1951	in
	1952	win32
	1953	example
	1954	for
	1955	read.xls()
687	1956
688	1957	2008-03-11 20:22 warnes
689	1958
690		* [r1246] NAMESPACE: Add xls2csv to exported function list
	1959	* [r1246]
	1960	NAMESPACE:
	1961	Add
	1962	xls2csv
	1963	to
	1964	exported
	1965	function
	1966	list
691	1967
692	1968	2008-01-30 19:55 warnes
693	1969
694		* [r1241] ChangeLog, DESCRIPTION, inst/NEWS: Update DESCRIPTION and
695		NEWS for release 2.4.0
	1970	* [r1241]
	1971	ChangeLog,
	1972	DESCRIPTION,
	1973	inst/NEWS:
	1974	Update
	1975	DESCRIPTION
	1976	and
	1977	NEWS
	1978	for
	1979	release
	1980	2.4.0
696	1981
697	1982	2008-01-29 11:26 arnima
698	1983
699		* [r1240] man/keep.Rd: Added argument 'all'.
	1984	* [r1240]
	1985	man/keep.Rd:
	1986	Added
	1987	argument
	1988	'all'.
700	1989
701	1990	2008-01-29 11:09 arnima
702	1991
703		* [r1239] R/keep.R: Added argument 'all'.
	1992	* [r1239]
	1993	R/keep.R:
	1994	Added
	1995	argument
	1996	'all'.
704	1997
705	1998	2007-10-22 02:24 warnes
706	1999
707	2000	* [r1196]
708	2001	branches/GenerateFORMATSfromFactorObjects/SASxport/DESCRIPTION,
709		trunk/MSOfficeUtil/DESCRIPTION, trunk/RMCMC/DESCRIPTION,
710		trunk/Rlsf/DESCRIPTION, trunk/SASxport/DESCRIPTION,
711		trunk/bwRF/DESCRIPTION, trunk/exp.ssize/DESCRIPTION,
712		trunk/fork/DESCRIPTION, DESCRIPTION, trunk/gmodels/DESCRIPTION,
713		trunk/gplots/DESCRIPTION, trunk/gregmisc/DESCRIPTION,
714		trunk/ssize/DESCRIPTION: Clarify GPL version
	2002	trunk/MSOfficeUtil/DESCRIPTION,
	2003	trunk/RMCMC/DESCRIPTION,
	2004	trunk/Rlsf/DESCRIPTION,
	2005	trunk/SASxport/DESCRIPTION,
	2006	trunk/bwRF/DESCRIPTION,
	2007	trunk/exp.ssize/DESCRIPTION,
	2008	trunk/fork/DESCRIPTION,
	2009	DESCRIPTION,
	2010	trunk/gmodels/DESCRIPTION,
	2011	trunk/gplots/DESCRIPTION,
	2012	trunk/gregmisc/DESCRIPTION,
	2013	trunk/ssize/DESCRIPTION:
	2014	Clarify
	2015	GPL
	2016	version
715	2017
716	2018	2007-09-10 13:39 ggorjan
717	2019
718		* [r1169] man/upperTriangle.Rd: removed unmatched brace
	2020	* [r1169]
	2021	man/upperTriangle.Rd:
	2022	removed
	2023	unmatched
	2024	brace
719	2025
720	2026	2007-09-10 13:02 ggorjan
721	2027
722		* [r1168] man/gdata-package.Rd: adding alias
	2028	* [r1168]
	2029	man/gdata-package.Rd:
	2030	adding
	2031	alias
723	2032
724	2033	2007-09-06 14:06 ggorjan
725	2034
726		* [r1162] man/gdata-package.Rd: keyword
	2035	* [r1162]
	2036	man/gdata-package.Rd:
	2037	keyword
727	2038
728	2039	2007-08-21 15:36 ggorjan
729	2040
730		* [r1154] man/gdata-package.Rd: package help page
	2041	* [r1154]
	2042	man/gdata-package.Rd:
	2043	package
	2044	help
	2045	page
731	2046
732	2047	2007-08-21 15:30 ggorjan
733	2048
734		* [r1153] NEWS, inst/NEWS: move
	2049	* [r1153]
	2050	NEWS,
	2051	inst/NEWS:
	2052	move
735	2053
736	2054	2007-08-21 15:29 ggorjan
737	2055
738		* [r1152] NEWS: move
	2056	* [r1152]
	2057	NEWS:
	2058	move
739	2059
740	2060	2007-08-20 10:18 ggorjan
741	2061
742		* [r1151] inst/doc/mapLevels.tex: clean
	2062	* [r1151]
	2063	inst/doc/mapLevels.tex:
	2064	clean
743	2065
744	2066	2007-08-20 10:17 ggorjan
745	2067
746		* [r1150] inst/doc/mapLevels.Rnw, inst/doc/mapLevels.pdf,
747		inst/doc/mapLevels.tex: a real vignette
	2068	* [r1150]
	2069	inst/doc/mapLevels.Rnw,
	2070	inst/doc/mapLevels.pdf,
	2071	inst/doc/mapLevels.tex:
	2072	a
	2073	real
	2074	vignette
748	2075
749	2076	2007-08-20 10:00 ggorjan
750	2077
751		* [r1149] inst/doc/unknown.Rnw, inst/doc/unknown.pdf,
752		inst/doc/unknown.tex: a real vignette
	2078	* [r1149]
	2079	inst/doc/unknown.Rnw,
	2080	inst/doc/unknown.pdf,
	2081	inst/doc/unknown.tex:
	2082	a
	2083	real
	2084	vignette
753	2085
754	2086	2007-08-20 08:18 ggorjan
755	2087
756		* [r1148] man/unknown.Rd: additional keyword for searchig
	2088	* [r1148]
	2089	man/unknown.Rd:
	2090	additional
	2091	keyword
	2092	for
	2093	searchig
757	2094
758	2095	2007-08-17 12:40 ggorjan
759	2096
760		* [r1147] man/unknown.Rd: keyword
	2097	* [r1147]
	2098	man/unknown.Rd:
	2099	keyword
761	2100
762	2101	2007-07-22 09:27 arnima
763	2102
764		* [r1103] R/Args.R, R/keep.R: Reverted back to
765		as.character(substitute(x)), so user can run keep(x),
766		keep("x"), Args(x), and Args("x").
	2103	* [r1103]
	2104	R/Args.R,
	2105	R/keep.R:
	2106	Reverted
	2107	back
	2108	to
	2109	as.character(substitute(x)),
	2110	so
	2111	user
	2112	can
	2113	run
	2114	keep(x), keep("x"),
	2115	Args(x),
	2116	and
	2117	Args("x").
767	2118
768	2119	2007-07-21 18:57 arnima
769	2120
770		* [r1102] R/keep.R: Changed as.character(substitute()) to
771		deparse(substitute()), following
772		help(substitute) recommendation.
	2121	* [r1102]
	2122	R/keep.R:
	2123	Changed
	2124	as.character(substitute())
	2125	to
	2126	deparse(substitute()),
	2127	following help(substitute)
	2128	recommendation.
773	2129
774	2130	2007-07-21 18:49 arnima
775	2131
776		* [r1101] R/Args.R: Changed as.character(substitute()) to
777		deparse(substitute()), following
778		help(substitute) recommendation.
	2132	* [r1101]
	2133	R/Args.R:
	2134	Changed
	2135	as.character(substitute())
	2136	to
	2137	deparse(substitute()),
	2138	following help(substitute)
	2139	recommendation.
779	2140
780	2141	2007-07-10 17:51 warnes
781	2142
782		* [r1099] R/read.xls.R, man/read.xls.Rd: Update read.xls() code and
783		docs with enhacements by Gabor Grothendieck
	2143	* [r1099]
	2144	R/read.xls.R,
	2145	man/read.xls.Rd:
	2146	Update
	2147	read.xls()
	2148	code
	2149	and
	2150	docs
	2151	with
	2152	enhacements
	2153	by
	2154	Gabor
	2155	Grothendieck
784	2156
785	2157	2007-06-06 10:24 ggorjan
786	2158
787		* [r1097] inst/doc/unknown.pdf, inst/doc/unknown.tex: last edits
788		from newsletter
	2159	* [r1097]
	2160	inst/doc/unknown.pdf,
	2161	inst/doc/unknown.tex:
	2162	last
	2163	edits
	2164	from
	2165	newsletter
789	2166
790	2167	2007-06-06 10:19 ggorjan
791	2168
792		* [r1096] R/drop.levels.R, man/drop.levels.Rd: drop levels as
793		suggested by Brian Ripley
	2169	* [r1096]
	2170	R/drop.levels.R,
	2171	man/drop.levels.Rd:
	2172	drop
	2173	levels
	2174	as
	2175	suggested
	2176	by
	2177	Brian
	2178	Ripley
794	2179
795	2180	2007-06-06 10:17 ggorjan
796	2181
797		* [r1095] inst/unitTests/Makefile, tests/doRUnit.R: better
798		integration of unit tests
	2182	* [r1095]
	2183	inst/unitTests/Makefile,
	2184	tests/doRUnit.R:
	2185	better
	2186	integration
	2187	of
	2188	unit
	2189	tests
799	2190
800	2191	2007-06-06 10:15 ggorjan
801	2192
802		* [r1094] R/mapLevels.R, R/unknown.R: making codetools happy
	2193	* [r1094]
	2194	R/mapLevels.R,
	2195	R/unknown.R:
	2196	making
	2197	codetools
	2198	happy
803	2199
804	2200	2007-01-28 10:42 arnima
805	2201
806		* [r1042] R/keep.R: Throw warnings rather than errors
	2202	* [r1042]
	2203	R/keep.R:
	2204	Throw
	2205	warnings
	2206	rather
	2207	than
	2208	errors
807	2209
808	2210	2007-01-27 11:36 arnima
809	2211
810		* [r1041] R/keep.R: Meaningful error message is given when
811		requested object does not exist
	2212	* [r1041]
	2213	R/keep.R:
	2214	Meaningful
	2215	error
	2216	message
	2217	is
	2218	given
	2219	when
	2220	requested
	2221	object
	2222	does
	2223	not
	2224	exist
812	2225
813	2226	2007-01-27 11:35 arnima
814	2227
815		* [r1040] R/is.what.R: is.* tests that return NA are not reported
816		is.what recursion is avoided
	2228	* [r1040]
	2229	R/is.what.R:
	2230	is.*
	2231	tests
	2232	that
	2233	return
	2234	NA
	2235	are
	2236	not
	2237	reported is.what
	2238	recursion
	2239	is
	2240	avoided
817	2241
818	2242	2006-11-30 21:38 ggorjan
819	2243
820		* [r1035] R/unknown.R: minor commet to the code
	2244	* [r1035]
	2245	R/unknown.R:
	2246	minor
	2247	commet
	2248	to
	2249	the
	2250	code
821	2251
822	2252	2006-11-30 21:36 ggorjan
823	2253
824		* [r1034] inst/doc/mapLevels.pdf, inst/doc/mapLevels.tex:
825		description of mapLevels methods
	2254	* [r1034]
	2255	inst/doc/mapLevels.pdf,
	2256	inst/doc/mapLevels.tex:
	2257	description
	2258	of
	2259	mapLevels
	2260	methods
826	2261
827	2262	2006-11-30 21:32 ggorjan
828	2263
829		* [r1033] inst/doc/unknown.pdf, inst/doc/unknown.tex: description
830		of unknown methods
	2264	* [r1033]
	2265	inst/doc/unknown.pdf,
	2266	inst/doc/unknown.tex:
	2267	description
	2268	of
	2269	unknown
	2270	methods
831	2271
832	2272	2006-11-16 13:05 ggorjan
833	2273
834		* [r1013] R/c.factor.R, man/c.factor.Rd: seems that c.factor was
835		not a good idea and there were better examples posted on r-devel
	2274	* [r1013]
	2275	R/c.factor.R,
	2276	man/c.factor.Rd:
	2277	seems
	2278	that
	2279	c.factor
	2280	was
	2281	not
	2282	a
	2283	good
	2284	idea
	2285	and
	2286	there
	2287	were
	2288	better
	2289	examples
	2290	posted
	2291	on
	2292	r-devel
836	2293	list
837	2294
838	2295	2006-11-14 22:25 ggorjan
839	2296
840		* [r1012] man/combine.Rd, man/frameApply.Rd, trunk/gmodels/R/ci.R,
841		trunk/gmodels/R/fast.prcomp.R, trunk/gmodels/man/ci.Rd,
842		trunk/gplots/R/bandplot.R, trunk/gplots/R/boxplot.n.R,
843		trunk/gplots/R/lowess.R, trunk/gplots/R/plot.lm.R,
844		trunk/gplots/R/plotCI.R, trunk/gplots/R/plotmeans.R,
845		trunk/gplots/R/residplot.R, trunk/gplots/R/wapply.R,
846		trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/plotCI.Rd,
847		trunk/gplots/man/plotmeans.Rd, trunk/gtools/R/combinations.R,
848		trunk/gtools/R/running.R, trunk/gtools/man/ELISA.Rd,
849		trunk/gtools/man/combinations.Rd: Removed executable property
	2297	* [r1012]
	2298	man/combine.Rd,
	2299	man/frameApply.Rd,
	2300	trunk/gmodels/R/ci.R,
	2301	trunk/gmodels/R/fast.prcomp.R,
	2302	trunk/gmodels/man/ci.Rd,
	2303	trunk/gplots/R/bandplot.R,
	2304	trunk/gplots/R/boxplot.n.R,
	2305	trunk/gplots/R/lowess.R,
	2306	trunk/gplots/R/plot.lm.R,
	2307	trunk/gplots/R/plotCI.R,
	2308	trunk/gplots/R/plotmeans.R,
	2309	trunk/gplots/R/residplot.R,
	2310	trunk/gplots/R/wapply.R,
	2311	trunk/gplots/man/boxplot.n.Rd,
	2312	trunk/gplots/man/plotCI.Rd,
	2313	trunk/gplots/man/plotmeans.Rd,
	2314	trunk/gtools/R/combinations.R,
	2315	trunk/gtools/R/running.R,
	2316	trunk/gtools/man/ELISA.Rd,
	2317	trunk/gtools/man/combinations.Rd:
	2318	Removed
	2319	executable
	2320	property
850	2321
851	2322	2006-11-10 23:51 ggorjan
852	2323
853		* [r1004] NAMESPACE, NEWS: just formatting
	2324	* [r1004]
	2325	NAMESPACE,
	2326	NEWS:
	2327	just
	2328	formatting
854	2329
855	2330	2006-11-02 15:08 ggorjan
856	2331
857		* [r1002] man/mapLevels.Rd, man/unknown.Rd: typos
	2332	* [r1002]
	2333	man/mapLevels.Rd,
	2334	man/unknown.Rd:
	2335	typos
858	2336
859	2337	2006-10-30 22:54 ggorjan
860	2338
861		* [r1001] man/write.fwf.Rd: some more examples for use of read.fwf
862		after write.fwf
	2339	* [r1001]
	2340	man/write.fwf.Rd:
	2341	some
	2342	more
	2343	examples
	2344	for
	2345	use
	2346	of
	2347	read.fwf
	2348	after
	2349	write.fwf
863	2350
864	2351	2006-10-30 22:34 ggorjan
865	2352
866		* [r1000] inst/unitTests: ignore for report files
	2353	* [r1000]
	2354	inst/unitTests:
	2355	ignore
	2356	for
	2357	report
	2358	files
867	2359
868	2360	2006-10-30 19:18 ggorjan
869	2361
870		* [r999] tests/tests.write.fwf.Rout.save: Id tag from source
	2362	* [r999]
	2363	tests/tests.write.fwf.Rout.save:
	2364	Id
	2365	tag
	2366	from
	2367	source
871	2368
872	2369	2006-10-30 19:07 ggorjan
873	2370
874		* [r998] NAMESPACE: removing unused import
	2371	* [r998]
	2372	NAMESPACE:
	2373	removing
	2374	unused
	2375	import
875	2376
876	2377	2006-10-30 19:04 ggorjan
877	2378
878		* [r997] R/write.fwf.R, inst/unitTests/runit.write.fwf.R,
879		man/write.fwf.Rd, tests/tests.write.fwf.R: Id tag
	2379	* [r997]
	2380	R/write.fwf.R,
	2381	inst/unitTests/runit.write.fwf.R,
	2382	man/write.fwf.Rd,
	2383	tests/tests.write.fwf.R:
	2384	Id
	2385	tag
880	2386
881	2387	2006-10-30 19:02 ggorjan
882	2388
883		* [r996] NAMESPACE, NEWS, R/write.fwf.R,
884		inst/unitTests/runit.write.fwf.R, man/write.fwf.Rd,
885		tests/tests.write.fwf.R, tests/tests.write.fwf.Rout.save:
	2389	* [r996]
	2390	NAMESPACE,
	2391	NEWS,
	2392	R/write.fwf.R,
	2393	inst/unitTests/runit.write.fwf.R,
	2394	man/write.fwf.Rd,
	2395	tests/tests.write.fwf.R,
	2396	tests/tests.write.fwf.Rout.save:
886	2397	write.fwf
887	2398
888	2399	2006-10-30 17:27 ggorjan
889	2400
890		* [r995] inst/unitTests/runit.reorder.factor.R: Id tag
	2401	* [r995]
	2402	inst/unitTests/runit.reorder.factor.R:
	2403	Id
	2404	tag
891	2405
892	2406	2006-10-30 17:26 ggorjan
893	2407
894		* [r994] inst/unitTests/runit.reorder.factor.R: added unit tests
895		for reorder.factor
	2408	* [r994]
	2409	inst/unitTests/runit.reorder.factor.R:
	2410	added
	2411	unit
	2412	tests
	2413	for
	2414	reorder.factor
896	2415
897	2416	2006-10-30 17:10 ggorjan
898	2417
899		* [r993] R/c.factor.R, R/mapLevels.R, R/unknown.R,
	2418	* [r993]
	2419	R/c.factor.R,
	2420	R/mapLevels.R,
	2421	R/unknown.R,
900	2422	inst/unitTests/runit.drop.levels.R,
901		inst/unitTests/runit.mapLevels.R, inst/unitTests/runit.trim.R,
902		inst/unitTests/runit.unknown.R, man/c.factor.Rd, man/unknown.Rd,
903		tests/doRUnit.R: mapply keeps names in R 2.4; POSIX unit tests
904		solved; $ should work now
	2423	inst/unitTests/runit.mapLevels.R,
	2424	inst/unitTests/runit.trim.R,
	2425	inst/unitTests/runit.unknown.R,
	2426	man/c.factor.Rd,
	2427	man/unknown.Rd,
	2428	tests/doRUnit.R:
	2429	mapply
	2430	keeps
	2431	names
	2432	in
	2433	R
	2434	2.4;
	2435	POSIX
	2436	unit
	2437	tests
	2438	solved;
	2439	$
	2440	should
	2441	work
	2442	now
905	2443
906	2444	2006-10-29 16:08 ggorjan
907	2445
908		* [r992] NEWS, R/unknown.R, inst/unitTests/runit.unknown.R,
909		man/unknown.Rd: fixed problem in tests; added unknown methods and
910		tests for matrices
	2446	* [r992]
	2447	NEWS,
	2448	R/unknown.R,
	2449	inst/unitTests/runit.unknown.R,
	2450	man/unknown.Rd:
	2451	fixed
	2452	problem
	2453	in
	2454	tests;
	2455	added
	2456	unknown
	2457	methods
	2458	and
	2459	tests
	2460	for
	2461	matrices
911	2462
912	2463	2006-10-29 15:47 ggorjan
913	2464
914		* [r991] R/drop.levels.R, R/mapLevels.R,
915		inst/unitTests/runit.mapLevels.R, man/mapLevels.Rd,
916		tests/doRUnit.R: sort is generic now; mapply keeps names in R
917		2.4.0; some codetools suggestions fixed
	2465	* [r991]
	2466	R/drop.levels.R,
	2467	R/mapLevels.R,
	2468	inst/unitTests/runit.mapLevels.R,
	2469	man/mapLevels.Rd,
	2470	tests/doRUnit.R:
	2471	sort
	2472	is
	2473	generic
	2474	now;
	2475	mapply
	2476	keeps
	2477	names
	2478	in
	2479	R
	2480	2.4.0;
	2481	some
	2482	codetools
	2483	suggestions
	2484	fixed
918	2485
919	2486	2006-10-29 15:34 ggorjan
920	2487
921		* [r990] DESCRIPTION, NAMESPACE: sort is generic from R 2.4.0
	2488	* [r990]
	2489	DESCRIPTION,
	2490	NAMESPACE:
	2491	sort
	2492	is
	2493	generic
	2494	from
	2495	R
	2496	2.4.0
922	2497
923	2498	2006-10-29 15:28 ggorjan
924	2499
925		* [r989] DESCRIPTION, NEWS, R/trim.R, man/trim.Rd: trim() gains ...
926		argument; version bump
	2500	* [r989]
	2501	DESCRIPTION,
	2502	NEWS,
	2503	R/trim.R,
	2504	man/trim.Rd:
	2505	trim()
	2506	gains
	2507	...
	2508	argument;
	2509	version
	2510	bump
927	2511
928	2512	2006-10-29 12:55 ggorjan
929	2513
930		* [r988] NEWS, R/reorder.R, man/reorder.Rd: Fixed collision bug
931		with stats version of reorder.factor
	2514	* [r988]
	2515	NEWS,
	2516	R/reorder.R,
	2517	man/reorder.Rd:
	2518	Fixed
	2519	collision
	2520	bug
	2521	with
	2522	stats
	2523	version
	2524	of
	2525	reorder.factor
932	2526
933	2527	2006-10-27 21:15 warnes
934	2528
935		* [r987] R/c.factor.R, man/c.factor.Rd: Add c() method for factor
936		objects, submitted by Gregor Gorjanc
	2529	* [r987]
	2530	R/c.factor.R,
	2531	man/c.factor.Rd:
	2532	Add
	2533	c()
	2534	method
	2535	for
	2536	factor
	2537	objects,
	2538	submitted
	2539	by
	2540	Gregor
	2541	Gorjanc
937	2542
938	2543	2006-09-19 21:08 warnes
939	2544
940		* [r986] NEWS: Update NEWS file for 2.3.0 release
	2545	* [r986]
	2546	NEWS:
	2547	Update
	2548	NEWS
	2549	file
	2550	for
	2551	2.3.0
	2552	release
941	2553
942	2554	2006-09-19 20:52 warnes
943	2555
944		* [r985] inst/unitTests/runit.trim.R: Explicitly set the local in
945		runit.trim.R to one where leading spaces affect sort order so
946		that the unit test works properly.
	2556	* [r985]
	2557	inst/unitTests/runit.trim.R:
	2558	Explicitly
	2559	set
	2560	the
	2561	local
	2562	in
	2563	runit.trim.R
	2564	to
	2565	one
	2566	where
	2567	leading
	2568	spaces
	2569	affect
	2570	sort
	2571	order
	2572	so
	2573	that
	2574	the
	2575	unit
	2576	test
	2577	works
	2578	properly.
947	2579
948	2580	2006-09-18 20:33 warnes
949	2581
950		* [r984] inst/doc/Rnews.sty: Update Rnews.sty to the latest version
	2582	* [r984]
	2583	inst/doc/Rnews.sty:
	2584	Update
	2585	Rnews.sty
	2586	to
	2587	the
	2588	latest
	2589	version
951	2590
952	2591	2006-09-18 20:24 warnes
953	2592
954		* [r983] R/trim.R, inst/unitTests/Makefile,
955		inst/unitTests/runit.trim.R, man/trim.Rd, tests/doRUnit.R:
956		Integrate fixes for trim() from Gregor and myself.
	2593	* [r983]
	2594	R/trim.R,
	2595	inst/unitTests/Makefile,
	2596	inst/unitTests/runit.trim.R,
	2597	man/trim.Rd,
	2598	tests/doRUnit.R:
	2599	Integrate
	2600	fixes
	2601	for
	2602	trim()
	2603	from
	2604	Gregor
	2605	and
	2606	myself.
957	2607
958	2608	2006-09-18 19:32 warnes
959	2609
960		* [r982] inst/unitTests/report.html, inst/unitTests/report.txt:
961		Remove unneeded files.
	2610	* [r982]
	2611	inst/unitTests/report.html,
	2612	inst/unitTests/report.txt:
	2613	Remove
	2614	unneeded
	2615	files.
962	2616
963	2617	2006-09-13 19:46 warnes
964	2618
965		* [r981] R/unknown.R, inst/unitTests, inst/unitTests/Makefile,
966		inst/unitTests/report.html, inst/unitTests/report.txt,
	2619	* [r981]
	2620	R/unknown.R,
	2621	inst/unitTests,
	2622	inst/unitTests/Makefile,
	2623	inst/unitTests/report.html,
	2624	inst/unitTests/report.txt,
967	2625	inst/unitTests/runit.drop.levels.R,
968		inst/unitTests/runit.mapLevels.R, inst/unitTests/runit.trim.R,
969		inst/unitTests/runit.unknown.R, man/unknown.Rd, tests,
970		tests/doRUnit.R: Add unknown() and unit test files
	2626	inst/unitTests/runit.mapLevels.R,
	2627	inst/unitTests/runit.trim.R,
	2628	inst/unitTests/runit.unknown.R,
	2629	man/unknown.Rd,
	2630	tests,
	2631	tests/doRUnit.R:
	2632	Add
	2633	unknown()
	2634	and
	2635	unit
	2636	test
	2637	files
971	2638
972	2639	2006-09-13 18:15 warnes
973	2640
974		* [r980] NAMESPACE, R/drop.levels.R, R/mapLevels.R, R/trim.R: More
975		fixes from Gregor Gorjanc
	2641	* [r980]
	2642	NAMESPACE,
	2643	R/drop.levels.R,
	2644	R/mapLevels.R,
	2645	R/trim.R:
	2646	More
	2647	fixes
	2648	from
	2649	Gregor
	2650	Gorjanc
976	2651
977	2652	2006-09-13 14:55 warnes
978	2653
979		* [r979] DESCRIPTION, NAMESPACE, R/combineLevels.R, R/mapFactor.R,
980		R/mapLevels.R, man/combineLevels.Rd, man/mapFactor.Rd,
981		man/mapLevels.Rd: Add mapLevels functions from Gregor Gorjanc,
982		along with associated unit tests.
	2654	* [r979]
	2655	DESCRIPTION,
	2656	NAMESPACE,
	2657	R/combineLevels.R,
	2658	R/mapFactor.R,
	2659	R/mapLevels.R,
	2660	man/combineLevels.Rd,
	2661	man/mapFactor.Rd,
	2662	man/mapLevels.Rd:
	2663	Add
	2664	mapLevels
	2665	functions
	2666	from
	2667	Gregor
	2668	Gorjanc,
	2669	along
	2670	with
	2671	associated
	2672	unit
	2673	tests.
983	2674
984	2675	2006-08-03 22:26 warnes
985	2676
986		* [r978] DESCRIPTION, NAMESPACE, R/combineLevels.R, R/mapFactor.R,
987		man/combineLevels.Rd, man/mapFactor.Rd: Add Gregor Gorjanc's
988		mapFactor() and combineLevels() functions.
	2677	* [r978]
	2678	DESCRIPTION,
	2679	NAMESPACE,
	2680	R/combineLevels.R,
	2681	R/mapFactor.R,
	2682	man/combineLevels.Rd,
	2683	man/mapFactor.Rd:
	2684	Add
	2685	Gregor
	2686	Gorjanc's
	2687	mapFactor()
	2688	and
	2689	combineLevels()
	2690	functions.
	2691
989	2692
990	2693	2006-08-02 22:21 warnes
991	2694
992		* [r977] trunk/BalloonPlotPaper/BalloonPlot.pdf,
	2695	* [r977]
	2696	trunk/BalloonPlotPaper/BalloonPlot.pdf,
993	2697	trunk/BalloonPlotPaper/BalloonPlot.tex,
994	2698	trunk/MSOfficeUtil/DESCRIPTION,
995	2699	trunk/PathwayModeling/thesispaper/slides.tex,
996		trunk/RMCMC/DESCRIPTION, trunk/RMCMC/man/make.density.Rd,
997		trunk/Rlsf/DESCRIPTION, trunk/Rlsf/man/lsf.numcpu.Rd,
998		trunk/Rlsf/man/lsf.parRapply.Rd, trunk/Rlsf/man/scat.Rd,
999		trunk/bwRF/DESCRIPTION, trunk/bwRF/man/RF.Rd,
	2700	trunk/RMCMC/DESCRIPTION,
	2701	trunk/RMCMC/man/make.density.Rd,
	2702	trunk/Rlsf/DESCRIPTION,
	2703	trunk/Rlsf/man/lsf.numcpu.Rd,
	2704	trunk/Rlsf/man/lsf.parRapply.Rd,
	2705	trunk/Rlsf/man/scat.Rd,
	2706	trunk/bwRF/DESCRIPTION,
	2707	trunk/bwRF/man/RF.Rd,
1000	2708	trunk/exp.ssize/inst/doc/ssize.pdf,
1001		trunk/exp.ssize/inst/doc/ssize.tex, trunk/fork/DESCRIPTION,
1002		trunk/fork/man/exit.Rd, trunk/fork/man/fork.Rd,
1003		trunk/fork/man/getpid.Rd, trunk/fork/man/kill.Rd,
1004		trunk/fork/man/signame.Rd, trunk/fork/man/wait.Rd,
1005		inst/doc/gregmisc.tex, man/ConvertMedUnits.Rd,
1006		man/aggregate.table.Rd, man/combine.Rd, man/interleave.Rd,
1007		man/matchcols.Rd, man/nobs.Rd, man/read.xls.Rd,
1008		man/rename.vars.Rd, man/reorder.Rd, man/trim.Rd, man/unmatrix.Rd,
1009		man/upperTriangle.Rd, trunk/gmodels/man/fast.prcomp.Rd,
1010		trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
	2709	trunk/exp.ssize/inst/doc/ssize.tex,
	2710	trunk/fork/DESCRIPTION,
	2711	trunk/fork/man/exit.Rd,
	2712	trunk/fork/man/fork.Rd,
	2713	trunk/fork/man/getpid.Rd,
	2714	trunk/fork/man/kill.Rd,
	2715	trunk/fork/man/signame.Rd,
	2716	trunk/fork/man/wait.Rd,
	2717	inst/doc/gregmisc.tex,
	2718	man/ConvertMedUnits.Rd,
	2719	man/aggregate.table.Rd,
	2720	man/combine.Rd,
	2721	man/interleave.Rd,
	2722	man/matchcols.Rd,
	2723	man/nobs.Rd,
	2724	man/read.xls.Rd,
	2725	man/rename.vars.Rd,
	2726	man/reorder.Rd,
	2727	man/trim.Rd,
	2728	man/unmatrix.Rd,
	2729	man/upperTriangle.Rd,
	2730	trunk/gmodels/man/fast.prcomp.Rd,
	2731	trunk/gmodels/man/fit.contrast.Rd,
	2732	trunk/gmodels/man/glh.test.Rd,
1011	2733	trunk/gmodels/man/make.contrasts.Rd,
1012	2734	trunk/gplots/inst/doc/BalloonPlot.pdf,
1013		trunk/gplots/man/balloonplot.Rd, trunk/gplots/man/bandplot.Rd,
1014		trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/colorpanel.Rd,
1015		trunk/gplots/man/hist2d.Rd, trunk/gplots/man/ooplot.Rd,
1016		trunk/gplots/man/overplot.Rd, trunk/gplots/man/plot.lm2.Rd,
1017		trunk/gplots/man/plotCI.Rd, trunk/gplots/man/plotmeans.Rd,
1018		trunk/gplots/man/residplot.Rd, trunk/gplots/man/sinkplot.Rd,
1019		trunk/gplots/man/smartlegend.Rd, trunk/gplots/man/space.Rd,
1020		trunk/gplots/man/textplot.Rd, trunk/gplots/man/wapply.Rd,
	2735	trunk/gplots/man/balloonplot.Rd,
	2736	trunk/gplots/man/bandplot.Rd,
	2737	trunk/gplots/man/boxplot.n.Rd,
	2738	trunk/gplots/man/colorpanel.Rd,
	2739	trunk/gplots/man/hist2d.Rd,
	2740	trunk/gplots/man/ooplot.Rd,
	2741	trunk/gplots/man/overplot.Rd,
	2742	trunk/gplots/man/plot.lm2.Rd,
	2743	trunk/gplots/man/plotCI.Rd,
	2744	trunk/gplots/man/plotmeans.Rd,
	2745	trunk/gplots/man/residplot.Rd,
	2746	trunk/gplots/man/sinkplot.Rd,
	2747	trunk/gplots/man/smartlegend.Rd,
	2748	trunk/gplots/man/space.Rd,
	2749	trunk/gplots/man/textplot.Rd,
	2750	trunk/gplots/man/wapply.Rd,
1021	2751	trunk/gregmisc/DESCRIPTION,
1022	2752	trunk/gregmisc/gregmisc/DESCRIPTION.standalone,
1023	2753	trunk/gregmisc/inst/doc/gregmisc.tex,
1024		trunk/gtools/man/addLast.Rd, trunk/gtools/man/assert.Rd,
1025		trunk/gtools/man/capture.Rd, trunk/gtools/man/combinations.Rd,
1026		trunk/gtools/man/defmacro.Rd, trunk/gtools/man/dirichlet.Rd,
1027		trunk/gtools/man/foldchange.Rd, trunk/gtools/man/invalid.Rd,
1028		trunk/gtools/man/logit.Rd, trunk/gtools/man/mixedsort.Rd,
1029		trunk/gtools/man/oddeven.Rd, trunk/gtools/man/permute.Rd,
1030		trunk/gtools/man/quantcut.Rd, trunk/gtools/man/running.Rd,
1031		trunk/gtools/man/scat.Rd, trunk/gtools/man/setTCPNoDelay.Rd,
1032		trunk/nws/DESCRIPTION, trunk/qvalue/DESCRIPTION,
1033		trunk/qvalue/man/print.qvalue.Rd, trunk/ssize/DESCRIPTION,
1034		trunk/ssize/man/pow.Rd: Update my email address
	2754	trunk/gtools/man/addLast.Rd,
	2755	trunk/gtools/man/assert.Rd,
	2756	trunk/gtools/man/capture.Rd,
	2757	trunk/gtools/man/combinations.Rd,
	2758	trunk/gtools/man/defmacro.Rd,
	2759	trunk/gtools/man/dirichlet.Rd,
	2760	trunk/gtools/man/foldchange.Rd,
	2761	trunk/gtools/man/invalid.Rd,
	2762	trunk/gtools/man/logit.Rd,
	2763	trunk/gtools/man/mixedsort.Rd,
	2764	trunk/gtools/man/oddeven.Rd,
	2765	trunk/gtools/man/permute.Rd,
	2766	trunk/gtools/man/quantcut.Rd,
	2767	trunk/gtools/man/running.Rd,
	2768	trunk/gtools/man/scat.Rd,
	2769	trunk/gtools/man/setTCPNoDelay.Rd,
	2770	trunk/nws/DESCRIPTION,
	2771	trunk/qvalue/DESCRIPTION,
	2772	trunk/qvalue/man/print.qvalue.Rd,
	2773	trunk/ssize/DESCRIPTION,
	2774	trunk/ssize/man/pow.Rd:
	2775	Update
	2776	my
	2777	email
	2778	address
1035	2779
1036	2780	2006-08-02 21:03 warnes
1037	2781
1038		* [r976] data/MedUnits.rda: Remove MedUnits.rda to convert to
1039		binary format
	2782	* [r976]
	2783	data/MedUnits.rda:
	2784	Remove
	2785	MedUnits.rda
	2786	to
	2787	convert
	2788	to
	2789	binary
	2790	format
1040	2791
1041	2792	2006-08-02 21:03 warnes
1042	2793
1043		* [r975] data/MedUnits.rda: Remove MedUnits.rda to convert to
1044		binary format
	2794	* [r975]
	2795	data/MedUnits.rda:
	2796	Remove
	2797	MedUnits.rda
	2798	to
	2799	convert
	2800	to
	2801	binary
	2802	format
1045	2803
1046	2804	2006-08-02 19:06 warnes
1047	2805
1048		* [r974] DESCRIPTION: Update version number
	2806	* [r974]
	2807	DESCRIPTION:
	2808	Update
	2809	version
	2810	number
1049	2811
1050	2812	2006-08-02 19:04 warnes
1051	2813
1052		* [r973] NAMESPACE, R/drop.levels.R, R/trim.R, man/drop.levels.Rd,
1053		man/trim.Rd: Integrate changes suggested by Gregor Gorjanc
	2814	* [r973]
	2815	NAMESPACE,
	2816	R/drop.levels.R,
	2817	R/trim.R,
	2818	man/drop.levels.Rd,
	2819	man/trim.Rd:
	2820	Integrate
	2821	changes
	2822	suggested
	2823	by
	2824	Gregor
	2825	Gorjanc
1054	2826
1055	2827	2006-03-14 18:00 nj7w
1056	2828
1057		* [r940] NAMESPACE, R/trim.R, man/resample.Rd: Fixed R CMD check
1058		errors and added trim.default to NAMESPACE
	2829	* [r940]
	2830	NAMESPACE,
	2831	R/trim.R,
	2832	man/resample.Rd:
	2833	Fixed
	2834	R
	2835	CMD
	2836	check
	2837	errors
	2838	and
	2839	added
	2840	trim.default
	2841	to
	2842	NAMESPACE
1059	2843
1060	2844	2006-03-13 19:50 nj7w
1061	2845
1062		* [r939] R/trim.R: Added trim.character and trim.factor as per
1063		Gregor's suggestions
	2846	* [r939]
	2847	R/trim.R:
	2848	Added
	2849	trim.character
	2850	and
	2851	trim.factor
	2852	as
	2853	per
	2854	Gregor's
	2855	suggestions
1064	2856
1065	2857	2006-01-03 20:20 warnes
1066	2858
1067		* [r839] NAMESPACE, R/resample.R, man/resample.Rd: Add resample()
1068		function, which generates a random sample or
1069		permutation from the elements of the supplied vector, even if the
1070		vector has length 1. This avoide the problems caused by
1071		base::sample()'s special case for vectors of length 1, where it
1072		attempts to sample from 1:x.
	2859	* [r839]
	2860	NAMESPACE,
	2861	R/resample.R,
	2862	man/resample.Rd:
	2863	Add
	2864	resample()
	2865	function,
	2866	which
	2867	generates
	2868	a
	2869	random
	2870	sample
	2871	or permutation
	2872	from
	2873	the
	2874	elements
	2875	of
	2876	the
	2877	supplied
	2878	vector,
	2879	even
	2880	if
	2881	the vector
	2882	has
	2883	length
	2884	1.
	2885
	2886	This
	2887	avoide
	2888	the
	2889	problems
	2890	caused
	2891	by base::sample()'s
	2892	special
	2893	case
	2894	for
	2895	vectors
	2896	of
	2897	length
	2898	1,
	2899	where
	2900	it attempts
	2901	to
	2902	sample
	2903	from
	2904	1:x.
1073	2905
1074	2906	2005-12-13 15:56 nj7w
1075	2907
1076		* [r806] ChangeLog, NEWS: Updated news and removed changelog
	2908	* [r806]
	2909	ChangeLog,
	2910	NEWS:
	2911	Updated
	2912	news
	2913	and
	2914	removed
	2915	changelog
1077	2916
1078	2917	2005-12-12 22:02 nj7w
1079	2918
1080		* [r798] DESCRIPTION, man/interleave.Rd: Updated version number for
1081		CRAN release
	2919	* [r798]
	2920	DESCRIPTION,
	2921	man/interleave.Rd:
	2922	Updated
	2923	version
	2924	number
	2925	for
	2926	CRAN
	2927	release
1082	2928
1083	2929	2005-12-08 20:18 warnes
1084	2930
1085		* [r789] R/interleave.R: Andrew Burgess reported that interleave()
1086		converts 1-column matrixes
1087		to vectors and provided a patch. A slight modification of his
1088		patch
1089		has been applied. There is now a 'drop' argument, which controls
1090		whether 'unnecessary' dimensions are dropped. The default is
	2931	* [r789]
	2932	R/interleave.R:
	2933	Andrew
	2934	Burgess
	2935	reported
	2936	that
	2937	interleave()
	2938	converts
	2939	1-column
	2940	matrixes to
	2941	vectors
	2942	and
	2943	provided
	2944	a
	2945	patch.
	2946
	2947	A
	2948	slight
	2949	modification
	2950	of
	2951	his
	2952	patch has
	2953	been
	2954	applied.
	2955
	2956	There
	2957	is
	2958	now
	2959	a
	2960	'drop'
	2961	argument,
	2962	which
	2963	controls whether
	2964	'unnecessary'
	2965	dimensions
	2966	are
	2967	dropped.
	2968
	2969	The
	2970	default
	2971	is
1091	2972	FALSE.
1092	2973
1093	2974	2005-12-04 03:02 warnes
1094	2975
1095		* [r779] man/interleave.Rd: Andrew Burgess reported that
1096		interleave() converts 1-column matrixes
1097		to vectors and provided a patch. A slight modification of his
1098		patch
1099		has been applied. There is now a 'drop' argument, which controls
1100		whether 'unnecessary' dimensions are dropped. The default is
	2976	* [r779]
	2977	man/interleave.Rd:
	2978	Andrew
	2979	Burgess
	2980	reported
	2981	that
	2982	interleave()
	2983	converts
	2984	1-column
	2985	matrixes to
	2986	vectors
	2987	and
	2988	provided
	2989	a
	2990	patch.
	2991
	2992	A
	2993	slight
	2994	modification
	2995	of
	2996	his
	2997	patch has
	2998	been
	2999	applied.
	3000
	3001	There
	3002	is
	3003	now
	3004	a
	3005	'drop'
	3006	argument,
	3007	which
	3008	controls whether
	3009	'unnecessary'
	3010	dimensions
	3011	are
	3012	dropped.
	3013
	3014	The
	3015	default
	3016	is
1101	3017	FALSE.
1102	3018
1103	3019	2005-12-01 16:41 nj7w
1104	3020
1105		* [r775] man/combine.Rd, man/reorder.Rd: Updated Greg's email
	3021	* [r775]
	3022	man/combine.Rd,
	3023	man/reorder.Rd:
	3024	Updated
	3025	Greg's
	3026	email
1106	3027	address
1107	3028
1108	3029	2005-12-01 16:39 nj7w
1109	3030
1110		* [r774] man/drop.levels.Rd, man/frameApply.Rd, man/ll.Rd,
1111		man/read.xls.Rd: Updated Jim's email address
	3031	* [r774]
	3032	man/drop.levels.Rd,
	3033	man/frameApply.Rd,
	3034	man/ll.Rd,
	3035	man/read.xls.Rd:
	3036	Updated
	3037	Jim's
	3038	email
	3039	address
1112	3040
1113	3041	2005-11-21 18:20 arnima
1114	3042
1115		* [r744] R/ll.R: Suppressed warning message in attach() call.
	3043	* [r744]
	3044	R/ll.R:
	3045	Suppressed
	3046	warning
	3047	message
	3048	in
	3049	attach()
	3050	call.
1116	3051
1117	3052	2005-10-27 18:41 warnes
1118	3053
1119		* [r716] DESCRIPTION: Bump version number again to show that I
1120		fixed a bug.
	3054	* [r716]
	3055	DESCRIPTION:
	3056	Bump
	3057	version
	3058	number
	3059	again
	3060	to
	3061	show
	3062	that
	3063	I
	3064	fixed
	3065	a
	3066	bug.
1121	3067
1122	3068	2005-10-27 18:19 warnes
1123	3069
1124		* [r715] DESCRIPTION, R/upperTriangle.R: Update version number
	3070	* [r715]
	3071	DESCRIPTION,
	3072	R/upperTriangle.R:
	3073	Update
	3074	version
	3075	number
1125	3076
1126	3077	2005-10-27 18:19 warnes
1127	3078
1128		* [r714] man/frameApply.Rd, man/reorder.Rd: Remove explicit loading
1129		of gtools in examples, so that failure to
1130		import functions from gtools gets properly caught by running the
	3079	* [r714]
	3080	man/frameApply.Rd,
	3081	man/reorder.Rd:
	3082	Remove
	3083	explicit
	3084	loading
	3085	of
	3086	gtools
	3087	in
	3088	examples,
	3089	so
	3090	that
	3091	failure
	3092	to import
	3093	functions
	3094	from
	3095	gtools
	3096	gets
	3097	properly
	3098	caught
	3099	by
	3100	running
	3101	the
1131	3102	examples.
1132	3103
1133	3104	2005-10-27 18:18 warnes
1134	3105
1135		* [r713] man/upperTriangle.Rd: Add missing close-bracket
	3106	* [r713]
	3107	man/upperTriangle.Rd:
	3108	Add
	3109	missing
	3110	close-bracket
1136	3111
1137	3112	2005-10-27 18:17 warnes
1138	3113
1139		* [r712] NAMESPACE: Add upperTriangle and friends
	3114	* [r712]
	3115	NAMESPACE:
	3116	Add
	3117	upperTriangle
	3118	and
	3119	friends
1140	3120
1141	3121	2005-10-27 12:59 warnes
1142	3122
1143		* [r711] R/upperTriangle.R, man/upperTriangle.Rd: Add functions for
1144		extracting, modifying upper and lower trianglular
1145		components of matrices.
	3123	* [r711]
	3124	R/upperTriangle.R,
	3125	man/upperTriangle.Rd:
	3126	Add
	3127	functions
	3128	for
	3129	extracting,
	3130	modifying
	3131	upper
	3132	and
	3133	lower
	3134	trianglular components
	3135	of
	3136	matrices.
1146	3137
1147	3138	2005-10-19 16:36 arnima
1148	3139
1149		* [r695] R/is.what.R: Replaced the "not.using" vector with a more
1150		robust try(get(test)) to find out whether a particular is.*
1151		function returns a logical of length one.
	3140	* [r695]
	3141	R/is.what.R:
	3142	Replaced
	3143	the
	3144	"not.using"
	3145	vector
	3146	with
	3147	a
	3148	more
	3149	robust
	3150	try(get(test))
	3151	to
	3152	find
	3153	out
	3154	whether
	3155	a
	3156	particular
	3157	is.*
	3158	function
	3159	returns
	3160	a
	3161	logical
	3162	of
	3163	length
	3164	one.
1152	3165
1153	3166	2005-09-12 15:44 nj7w
1154	3167
1155		* [r671] man/aggregate.table.Rd, man/interleave.Rd,
1156		man/matchcols.Rd, man/nobs.Rd, man/read.xls.Rd,
1157		man/rename.vars.Rd, man/trim.Rd, man/unmatrix.Rd,
1158		trunk/gmodels/man/fast.prcomp.Rd, trunk/gmodels/man/glh.test.Rd,
1159		trunk/gplots/man/hist2d.Rd, trunk/gplots/man/ooplot.Rd,
1160		trunk/gplots/man/residplot.Rd, trunk/gplots/man/sinkplot.Rd,
1161		trunk/gplots/man/smartlegend.Rd, trunk/gplots/man/space.Rd,
1162		trunk/gtools/man/assert.Rd, trunk/gtools/man/dirichlet.Rd,
1163		trunk/gtools/man/permute.Rd, trunk/gtools/man/scat.Rd: Updated
1164		Greg's email
	3168	* [r671]
	3169	man/aggregate.table.Rd,
	3170	man/interleave.Rd,
	3171	man/matchcols.Rd,
	3172	man/nobs.Rd,
	3173	man/read.xls.Rd,
	3174	man/rename.vars.Rd,
	3175	man/trim.Rd,
	3176	man/unmatrix.Rd,
	3177	trunk/gmodels/man/fast.prcomp.Rd,
	3178	trunk/gmodels/man/glh.test.Rd,
	3179	trunk/gplots/man/hist2d.Rd,
	3180	trunk/gplots/man/ooplot.Rd,
	3181	trunk/gplots/man/residplot.Rd,
	3182	trunk/gplots/man/sinkplot.Rd,
	3183	trunk/gplots/man/smartlegend.Rd,
	3184	trunk/gplots/man/space.Rd,
	3185	trunk/gtools/man/assert.Rd,
	3186	trunk/gtools/man/dirichlet.Rd,
	3187	trunk/gtools/man/permute.Rd,
	3188	trunk/gtools/man/scat.Rd:
	3189	Updated
	3190	Greg's
	3191	email
1165	3192
1166	3193	2005-09-06 15:43 nj7w
1167	3194
1168		* [r661] man/reorder.Rd: Added library(gtools) in the example
	3195	* [r661]
	3196	man/reorder.Rd:
	3197	Added
	3198	library(gtools)
	3199	in
	3200	the
	3201	example
1169	3202
1170	3203	2005-09-06 15:41 nj7w
1171	3204
1172		* [r660] NAMESPACE: Removed gtools dependency from NAMESPACE, as it
1173		was being used only in an example, and was giving warning
	3205	* [r660]
	3206	NAMESPACE:
	3207	Removed
	3208	gtools
	3209	dependency
	3210	from
	3211	NAMESPACE,
	3212	as
	3213	it
	3214	was
	3215	being
	3216	used
	3217	only
	3218	in
	3219	an
	3220	example,
	3221	and
	3222	was
	3223	giving
	3224	warning
1174	3225
1175	3226	2005-09-06 15:39 nj7w
1176	3227
1177		* [r659] DESCRIPTION: Added Suggests field
	3228	* [r659]
	3229	DESCRIPTION:
	3230	Added
	3231	Suggests
	3232	field
1178	3233
1179	3234	2005-09-02 23:23 nj7w
1180	3235
1181		* [r658] man/frameApply.Rd: Updated the example in frameApply
	3236	* [r658]
	3237	man/frameApply.Rd:
	3238	Updated
	3239	the
	3240	example
	3241	in
	3242	frameApply
1182	3243
1183	3244	2005-09-02 23:14 nj7w
1184	3245
1185		* [r656] NEWS: Added NEWS
	3246	* [r656]
	3247	NEWS:
	3248	Added
	3249	NEWS
1186	3250
1187	3251	2005-09-02 23:00 nj7w
1188	3252
1189		* [r654] ChangeLog: ChangeLog
	3253	* [r654]
	3254	ChangeLog:
	3255	ChangeLog
1190	3256
1191	3257	2005-08-31 16:28 nj7w
1192	3258
1193		* [r644] DESCRIPTION, trunk/gmodels/DESCRIPTION,
1194		trunk/gplots/DESCRIPTION: Added DESCRIPTION file
	3259	* [r644]
	3260	DESCRIPTION,
	3261	trunk/gmodels/DESCRIPTION,
	3262	trunk/gplots/DESCRIPTION:
	3263	Added
	3264	DESCRIPTION
	3265	file
1195	3266
1196	3267	2005-08-31 16:27 nj7w
1197	3268
1198		* [r643] DESCRIPTION.in, trunk/gmodels/DESCRIPTION.in,
1199		trunk/gplots/DESCRIPTION.in: removed DESCRIPTION.in
	3269	* [r643]
	3270	DESCRIPTION.in,
	3271	trunk/gmodels/DESCRIPTION.in,
	3272	trunk/gplots/DESCRIPTION.in:
	3273	removed
	3274	DESCRIPTION.in
1200	3275
1201	3276	2005-07-20 21:06 nj7w
1202	3277
1203		* [r631] man/ll.Rd: updated documentation
	3278	* [r631]
	3279	man/ll.Rd:
	3280	updated
	3281	documentation
1204	3282
1205	3283	2005-07-20 21:05 nj7w
1206	3284
1207		* [r630] R/Args.R: ## Args() was using a different search path from
1208		args(), e.g.
1209		rep <- function(local) return(NULL)
1210		args()
	3285	* [r630]
	3286	R/Args.R:
	3287	##
1211	3288	Args()
1212		## Fixed
	3289	was
	3290	using
	3291	a
	3292	different
	3293	search
	3294	path
	3295	from
	3296	args(),
	3297	e.g. rep
	3298	<-
	3299	function(local)
	3300	return(NULL) args() Args() ##
	3301	Fixed
1213	3302
1214	3303	2005-07-20 21:05 nj7w
1215	3304
1216		* [r629] R/is.what.R: ## is.what() was giving needless warnings for
1217		functions, e.g.
1218		is.what(plot)
1219		## Fixed
	3305	* [r629]
	3306	R/is.what.R:
	3307	##
	3308	is.what()
	3309	was
	3310	giving
	3311	needless
	3312	warnings
	3313	for
	3314	functions,
	3315	e.g. is.what(plot) ##
	3316	Fixed
1220	3317
1221	3318	2005-07-20 21:04 nj7w
1222	3319
1223		* [r628] R/ll.R: ## ll() was crashing if argument was a list of
1224		length zero, e.g.
1225		x <- list()
1226		ll(x)
1227		## Fixed, and added sort.elements (see new help page)
	3320	* [r628]
	3321	R/ll.R:
	3322	##
	3323	ll()
	3324	was
	3325	crashing
	3326	if
	3327	argument
	3328	was
	3329	a
	3330	list
	3331	of
	3332	length
	3333	zero,
	3334	e.g. x
	3335	<-
	3336	list() ll(x) ##
	3337	Fixed,
	3338	and
	3339	added
	3340	sort.elements
	3341	(see
	3342	new
	3343	help
	3344	page)
1228	3345
1229	3346	2005-06-09 14:20 nj7w
1230	3347
1231		* [r625] R/Args.R, R/aggregate.table.R, R/combine.R, R/elem.R,
1232		R/env.R, R/frameApply.R, R/interleave.R, R/is.what.R, R/keep.R,
1233		R/ll.R, R/matchcols.R, R/nobs.R, R/read.xls.R, R/rename.vars.R,
1234		R/reorder.R, R/trim.R, R/unmatrix.R, inst/perl/IO/AtomicFile.pm,
1235		inst/perl/IO/InnerFile.pm, inst/perl/IO/Lines.pm,
1236		inst/perl/IO/Scalar.pm, inst/perl/IO/Scalar.pm.html,
1237		inst/perl/IO/ScalarArray.pm, inst/perl/IO/Stringy.pm,
1238		inst/perl/IO/Wrap.pm, inst/perl/IO/WrapTie.pm,
1239		man/aggregate.table.Rd, man/combine.Rd, man/drop.levels.Rd,
1240		man/interleave.Rd, man/nobs.Rd, man/rename.vars.Rd,
1241		man/reorder.Rd, trunk/gmodels/R/ci.R,
1242		trunk/gmodels/R/coefFrame.R, trunk/gmodels/R/estimable.R,
1243		trunk/gmodels/R/fast.prcomp.R, trunk/gmodels/R/fit.contrast.R,
1244		trunk/gmodels/R/glh.test.R, trunk/gmodels/R/make.contrasts.R,
1245		trunk/gmodels/man/CrossTable.Rd, trunk/gmodels/man/ci.Rd,
1246		trunk/gmodels/man/coefFrame.Rd, trunk/gmodels/man/estimable.Rd,
	3348	* [r625]
	3349	R/Args.R,
	3350	R/aggregate.table.R,
	3351	R/combine.R,
	3352	R/elem.R,
	3353	R/env.R,
	3354	R/frameApply.R,
	3355	R/interleave.R,
	3356	R/is.what.R,
	3357	R/keep.R,
	3358	R/ll.R,
	3359	R/matchcols.R,
	3360	R/nobs.R,
	3361	R/read.xls.R,
	3362	R/rename.vars.R,
	3363	R/reorder.R,
	3364	R/trim.R,
	3365	R/unmatrix.R,
	3366	inst/perl/IO/AtomicFile.pm,
	3367	inst/perl/IO/InnerFile.pm,
	3368	inst/perl/IO/Lines.pm,
	3369	inst/perl/IO/Scalar.pm,
	3370	inst/perl/IO/Scalar.pm.html,
	3371	inst/perl/IO/ScalarArray.pm,
	3372	inst/perl/IO/Stringy.pm,
	3373	inst/perl/IO/Wrap.pm,
	3374	inst/perl/IO/WrapTie.pm,
	3375	man/aggregate.table.Rd,
	3376	man/combine.Rd,
	3377	man/drop.levels.Rd,
	3378	man/interleave.Rd,
	3379	man/nobs.Rd,
	3380	man/rename.vars.Rd,
	3381	man/reorder.Rd,
	3382	trunk/gmodels/R/ci.R,
	3383	trunk/gmodels/R/coefFrame.R,
	3384	trunk/gmodels/R/estimable.R,
	3385	trunk/gmodels/R/fast.prcomp.R,
	3386	trunk/gmodels/R/fit.contrast.R,
	3387	trunk/gmodels/R/glh.test.R,
	3388	trunk/gmodels/R/make.contrasts.R,
	3389	trunk/gmodels/man/CrossTable.Rd,
	3390	trunk/gmodels/man/ci.Rd,
	3391	trunk/gmodels/man/coefFrame.Rd,
	3392	trunk/gmodels/man/estimable.Rd,
1247	3393	trunk/gmodels/man/fast.prcomp.Rd,
1248		trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
	3394	trunk/gmodels/man/fit.contrast.Rd,
	3395	trunk/gmodels/man/glh.test.Rd,
1249	3396	trunk/gmodels/man/make.contrasts.Rd,
1250		trunk/gplots/R/balloonplot.R, trunk/gplots/R/bandplot.R,
1251		trunk/gplots/R/boxplot.n.R, trunk/gplots/R/colorpanel.R,
1252		trunk/gplots/R/heatmap.2.R, trunk/gplots/R/hist2d.R,
1253		trunk/gplots/R/lowess.R, trunk/gplots/R/ooplot.R,
1254		trunk/gplots/R/overplot.R, trunk/gplots/R/plotCI.R,
1255		trunk/gplots/R/plotmeans.R, trunk/gplots/R/qqnorm.aov.R,
1256		trunk/gplots/R/residplot.R, trunk/gplots/R/rich.color.R,
1257		trunk/gplots/R/sinkplot.R, trunk/gplots/R/smartlegend.R,
1258		trunk/gplots/R/space.R, trunk/gplots/R/textplot.R,
1259		trunk/gplots/R/wapply.R, trunk/gplots/man/1,
1260		trunk/gplots/man/bandplot.Rd, trunk/gplots/man/barplot2.Rd,
1261		trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/hist2d.Rd,
1262		trunk/gplots/man/lowess.Rd, trunk/gplots/man/plotCI.Rd,
1263		trunk/gplots/man/plotmeans.Rd, trunk/gplots/man/residplot.Rd,
1264		trunk/gplots/man/space.Rd, trunk/gplots/man/wapply.Rd,
1265		trunk/gtools/R/RSCompat.S, trunk/gtools/R/combinations.R,
1266		trunk/gtools/R/dirichlet.R, trunk/gtools/R/foldchange.R,
1267		trunk/gtools/R/invalid.R, trunk/gtools/R/logit.R,
1268		trunk/gtools/R/mixedsort.R, trunk/gtools/R/oddeven.R,
1269		trunk/gtools/R/permute.R, trunk/gtools/R/quantcut.R,
1270		trunk/gtools/R/running.R, trunk/gtools/R/scat.R,
1271		trunk/gtools/man/ELISA.Rd, trunk/gtools/man/combinations.Rd,
1272		trunk/gtools/man/dirichlet.Rd, trunk/gtools/man/foldchange.Rd,
1273		trunk/gtools/man/invalid.Rd, trunk/gtools/man/logit.Rd,
1274		trunk/gtools/man/mixedsort.Rd, trunk/gtools/man/oddeven.Rd,
1275		trunk/gtools/man/permute.Rd, trunk/gtools/man/quantcut.Rd,
1276		trunk/gtools/man/running.Rd, trunk/gtools/man/scat.Rd: Updating
1277		the version number, and various help files to synchronize
1278		splitting of gregmisc bundle in 4 individual components.
	3397	trunk/gplots/R/balloonplot.R,
	3398	trunk/gplots/R/bandplot.R,
	3399	trunk/gplots/R/boxplot.n.R,
	3400	trunk/gplots/R/colorpanel.R,
	3401	trunk/gplots/R/heatmap.2.R,
	3402	trunk/gplots/R/hist2d.R,
	3403	trunk/gplots/R/lowess.R,
	3404	trunk/gplots/R/ooplot.R,
	3405	trunk/gplots/R/overplot.R,
	3406	trunk/gplots/R/plotCI.R,
	3407	trunk/gplots/R/plotmeans.R,
	3408	trunk/gplots/R/qqnorm.aov.R,
	3409	trunk/gplots/R/residplot.R,
	3410	trunk/gplots/R/rich.color.R,
	3411	trunk/gplots/R/sinkplot.R,
	3412	trunk/gplots/R/smartlegend.R,
	3413	trunk/gplots/R/space.R,
	3414	trunk/gplots/R/textplot.R,
	3415	trunk/gplots/R/wapply.R,
	3416	trunk/gplots/man/1,
	3417	trunk/gplots/man/bandplot.Rd,
	3418	trunk/gplots/man/barplot2.Rd,
	3419	trunk/gplots/man/boxplot.n.Rd,
	3420	trunk/gplots/man/hist2d.Rd,
	3421	trunk/gplots/man/lowess.Rd,
	3422	trunk/gplots/man/plotCI.Rd,
	3423	trunk/gplots/man/plotmeans.Rd,
	3424	trunk/gplots/man/residplot.Rd,
	3425	trunk/gplots/man/space.Rd,
	3426	trunk/gplots/man/wapply.Rd,
	3427	trunk/gtools/R/RSCompat.S,
	3428	trunk/gtools/R/combinations.R,
	3429	trunk/gtools/R/dirichlet.R,
	3430	trunk/gtools/R/foldchange.R,
	3431	trunk/gtools/R/invalid.R,
	3432	trunk/gtools/R/logit.R,
	3433	trunk/gtools/R/mixedsort.R,
	3434	trunk/gtools/R/oddeven.R,
	3435	trunk/gtools/R/permute.R,
	3436	trunk/gtools/R/quantcut.R,
	3437	trunk/gtools/R/running.R,
	3438	trunk/gtools/R/scat.R,
	3439	trunk/gtools/man/ELISA.Rd,
	3440	trunk/gtools/man/combinations.Rd,
	3441	trunk/gtools/man/dirichlet.Rd,
	3442	trunk/gtools/man/foldchange.Rd,
	3443	trunk/gtools/man/invalid.Rd,
	3444	trunk/gtools/man/logit.Rd,
	3445	trunk/gtools/man/mixedsort.Rd,
	3446	trunk/gtools/man/oddeven.Rd,
	3447	trunk/gtools/man/permute.Rd,
	3448	trunk/gtools/man/quantcut.Rd,
	3449	trunk/gtools/man/running.Rd,
	3450	trunk/gtools/man/scat.Rd:
	3451	Updating
	3452	the
	3453	version
	3454	number,
	3455	and
	3456	various
	3457	help
	3458	files
	3459	to
	3460	synchronize
	3461	splitting
	3462	of
	3463	gregmisc
	3464	bundle
	3465	in
	3466	4
	3467	individual
	3468	components.
1279	3469
1280	3470	2005-06-07 19:51 nj7w
1281	3471
1282		* [r622] R/drop.levels.R: Reverting to the previous version of
1283		drop.levels.R by replacing
1284		sapply(...) with as.data.frame(lapply(...)) because sapply has
1285		the undesirable effect of converting the object to a matrix,
1286		which in turn coerces the factors to numeric.
	3472	* [r622]
	3473	R/drop.levels.R:
	3474	Reverting
	3475	to
	3476	the
	3477	previous
	3478	version
	3479	of
	3480	drop.levels.R
	3481	by
	3482	replacing sapply(...)
	3483	with
	3484	as.data.frame(lapply(...))
	3485	because
	3486	sapply
	3487	has
	3488	the
	3489	undesirable
	3490	effect
	3491	of
	3492	converting
	3493	the
	3494	object
	3495	to
	3496	a
	3497	matrix, which
	3498	in
	3499	turn
	3500	coerces
	3501	the
	3502	factors
	3503	to
	3504	numeric.
1287	3505
1288	3506	2005-05-13 18:59 nj7w
1289	3507
1290		* [r621] R/read.xls.R, trunk/gmodels/man/CrossTable.Rd,
1291		trunk/gplots/man/heatmap.2.Rd: 1) Using dQuote.ascii function in
1292		read.xls as the new version of dQuote doesn't work proprly with
1293		UTF-8 locale.
1294		2) Modified CrossTable.Rd usage in gmodels
1295		3) Modified heatmap.2 usage in gplots.
	3508	* [r621]
	3509	R/read.xls.R,
	3510	trunk/gmodels/man/CrossTable.Rd,
	3511	trunk/gplots/man/heatmap.2.Rd:
	3512	1)
	3513	Using
	3514	dQuote.ascii
	3515	function
	3516	in
	3517	read.xls
	3518	as
	3519	the
	3520	new
	3521	version
	3522	of
	3523	dQuote
	3524	doesn't
	3525	work
	3526	proprly
	3527	with
	3528	UTF-8
	3529	locale. 2)
	3530	Modified
	3531	CrossTable.Rd
	3532	usage
	3533	in
	3534	gmodels 3)
	3535	Modified
	3536	heatmap.2
	3537	usage
	3538	in
	3539	gplots.
1296	3540
1297	3541	2005-04-02 04:19 warnes
1298	3542
1299		* [r600] NAMESPACE, R/drop.levels.R, man/drop.levels.Rd,
1300		trunk/gtools/NAMESPACE, trunk/gtools/R/drop.levels.R,
1301		trunk/gtools/man/drop.levels.Rd: Move drop.levels() from gtools
1302		to gdata.
	3543	* [r600]
	3544	NAMESPACE,
	3545	R/drop.levels.R,
	3546	man/drop.levels.Rd,
	3547	trunk/gtools/NAMESPACE,
	3548	trunk/gtools/R/drop.levels.R,
	3549	trunk/gtools/man/drop.levels.Rd:
	3550	Move
	3551	drop.levels()
	3552	from
	3553	gtools
	3554	to
	3555	gdata.
1303	3556
1304	3557	2005-04-02 04:14 warnes
1305	3558
1306		* [r598] NAMESPACE, R/frameApply.R, man/frameApply.Rd,
1307		trunk/gtools/NAMESPACE, trunk/gtools/R/frameApply.R,
1308		trunk/gtools/man/frameApply.Rd: Move frameApply() to gdata
	3559	* [r598]
	3560	NAMESPACE,
	3561	R/frameApply.R,
	3562	man/frameApply.Rd,
	3563	trunk/gtools/NAMESPACE,
	3564	trunk/gtools/R/frameApply.R,
	3565	trunk/gtools/man/frameApply.Rd:
	3566	Move
	3567	frameApply()
	3568	to
	3569	gdata
1309	3570	package.
1310	3571
1311	3572	2005-03-31 18:11 warnes
1312	3573
1313		* [r586] man/elem.Rd: Comment out example to avoid R CMD check
	3574	* [r586]
	3575	man/elem.Rd:
	3576	Comment
	3577	out
	3578	example
	3579	to
	3580	avoid
	3581	R
	3582	CMD
	3583	check
1314	3584	warnings
1315	3585
1316	3586	2005-03-22 06:16 warnes
1317	3587
1318		* [r578] NAMESPACE, R/ConvertMedUnits.R, data/MedUnits.Rda,
1319		data/MedUnits.rda, man/ConvertMedUnits.Rd, man/MedUnits.Rd,
1320		trunk/gregmisc/DESCRIPTION, trunk/gregmisc/NEWS: Fixes to pass `R
1321		CMD check'.
	3588	* [r578]
	3589	NAMESPACE,
	3590	R/ConvertMedUnits.R,
	3591	data/MedUnits.Rda,
	3592	data/MedUnits.rda,
	3593	man/ConvertMedUnits.Rd,
	3594	man/MedUnits.Rd,
	3595	trunk/gregmisc/DESCRIPTION,
	3596	trunk/gregmisc/NEWS:
	3597	Fixes
	3598	to
	3599	pass
	3600	`R
	3601	CMD
	3602	check'.
1322	3603
1323	3604	2005-03-22 02:51 warnes
1324	3605
1325		* [r577] R/Args.R, R/env.R, R/ll.R, man/Args.Rd: Integrated fixes
1326		from Arni.
	3606	* [r577]
	3607	R/Args.R,
	3608	R/env.R,
	3609	R/ll.R,
	3610	man/Args.Rd:
	3611	Integrated
	3612	fixes
	3613	from
	3614	Arni.
1327	3615
1328	3616	2005-03-22 02:50 warnes
1329	3617
1330		* [r576] man/read.xls.Rd: Improve documentation of 'perl' argument
1331		and give examples.
	3618	* [r576]
	3619	man/read.xls.Rd:
	3620	Improve
	3621	documentation
	3622	of
	3623	'perl'
	3624	argument
	3625	and
	3626	give
	3627	examples.
1332	3628
1333	3629	2005-03-09 23:39 warnes
1334	3630
1335		* [r573] R/ConvertMedUnits.R, man/ConvertMedUnits.Rd,
1336		man/MedUnits.Rd: - Add ConvertMedUnits() plus documentation
1337		- Add documentation for MedUnits data set.
	3631	* [r573]
	3632	R/ConvertMedUnits.R,
	3633	man/ConvertMedUnits.Rd,
	3634	man/MedUnits.Rd:
	3635	-
	3636	Add
	3637	ConvertMedUnits()
	3638	plus
	3639	documentation -
	3640	Add
	3641	documentation
	3642	for
	3643	MedUnits
	3644	data
	3645	set.
1338	3646
1339	3647	2005-03-09 23:37 warnes
1340	3648
1341		* [r572] data/MedUnits.Rda: Update MedUnits data file.
	3649	* [r572]
	3650	data/MedUnits.Rda:
	3651	Update
	3652	MedUnits
	3653	data
	3654	file.
1342	3655
1343	3656	2005-03-09 22:00 warnes
1344	3657
1345		* [r571] data/MedUnits.tab: Don't need both .Rda and .tab forms of
1346		the data.
	3658	* [r571]
	3659	data/MedUnits.tab:
	3660	Don't
	3661	need
	3662	both
	3663	.Rda
	3664	and
	3665	.tab
	3666	forms
	3667	of
	3668	the
	3669	data.
1347	3670
1348	3671	2005-03-09 21:55 warnes
1349	3672
1350		* [r570] data, data/MedUnits.Rda, data/MedUnits.tab: Add MedUnits
1351		data set, which provides conversions between American
1352		'Conventional' and Standard Intertional (SI) medical units.
	3673	* [r570]
	3674	data,
	3675	data/MedUnits.Rda,
	3676	data/MedUnits.tab:
	3677	Add
	3678	MedUnits
	3679	data
	3680	set,
	3681	which
	3682	provides
	3683	conversions
	3684	between
	3685	American 'Conventional'
	3686	and
	3687	Standard
	3688	Intertional
	3689	(SI)
	3690	medical
	3691	units.
1353	3692
1354	3693	2005-03-01 17:59 warnes
1355	3694
1356		* [r566] man/elem.Rd, man/ll.Rd: - Remove 'elem' call from ll
1357		example.
1358		- Add note to 'elem' man page that it is depreciated and 'll'
	3695	* [r566]
	3696	man/elem.Rd,
	3697	man/ll.Rd:
	3698	-
	3699	Remove
	3700	'elem'
	3701	call
	3702	from
	3703	ll
	3704	example. -
	3705	Add
	3706	note
	3707	to
	3708	'elem'
	3709	man
	3710	page
	3711	that
	3712	it
	3713	is
	3714	depreciated
	3715	and
	3716	'll'
1359	3717	should
1360		be used instead.
	3718
	3719	be
	3720	used
	3721	instead.
1361	3722
1362	3723	2005-02-26 01:15 nj7w
1363	3724
1364		* [r565] NAMESPACE, man/elem.Rd, man/env.Rd, man/ll.Rd,
1365		man/read.xls.Rd, trunk/gplots/R/heatmap.2.R,
1366		trunk/gplots/man/heatmap.2.Rd, trunk/gplots/man/rich.color.Rd,
1367		trunk/gplots/man/sinkplot.Rd, trunk/gplots/man/textplot.Rd: ***
1368		empty log message ***
	3725	* [r565]
	3726	NAMESPACE,
	3727	man/elem.Rd,
	3728	man/env.Rd,
	3729	man/ll.Rd,
	3730	man/read.xls.Rd,
	3731	trunk/gplots/R/heatmap.2.R,
	3732	trunk/gplots/man/heatmap.2.Rd,
	3733	trunk/gplots/man/rich.color.Rd,
	3734	trunk/gplots/man/sinkplot.Rd,
	3735	trunk/gplots/man/textplot.Rd:
	3736	***
	3737	empty
	3738	log
	3739	message
	3740	***
1369	3741
1370	3742	2005-02-25 23:32 warnes
1371	3743
1372		* [r564] NAMESPACE: Remove ll methods since the base function now
1373		handles lists and data frames.
	3744	* [r564]
	3745	NAMESPACE:
	3746	Remove
	3747	ll
	3748	methods
	3749	since
	3750	the
	3751	base
	3752	function
	3753	now
	3754	handles
	3755	lists
	3756	and
	3757	data
	3758	frames.
1374	3759
1375	3760	2005-02-25 23:22 warnes
1376	3761
1377		* [r563] R/elem.R, R/env.R, R/ll.R, man/Args.Rd, man/env.Rd,
1378		man/ll.Rd, trunk/gplots/man/rich.color.Rd: Integrate changes
1379		submitted by Arni Magnusson
	3762	* [r563]
	3763	R/elem.R,
	3764	R/env.R,
	3765	R/ll.R,
	3766	man/Args.Rd,
	3767	man/env.Rd,
	3768	man/ll.Rd,
	3769	trunk/gplots/man/rich.color.Rd:
	3770	Integrate
	3771	changes
	3772	submitted
	3773	by
	3774	Arni
	3775	Magnusson
1380	3776
1381	3777	2005-01-31 22:22 warnes
1382	3778
1383		* [r529] R/read.xls.R, man/read.xls.Rd: Add ability to specify the
1384		perl executable and path.
	3779	* [r529]
	3780	R/read.xls.R,
	3781	man/read.xls.Rd:
	3782	Add
	3783	ability
	3784	to
	3785	specify
	3786	the
	3787	perl
	3788	executable
	3789	and
	3790	path.
1385	3791
1386	3792	2005-01-28 18:58 warnes
1387	3793
1388		* [r526] DESCRIPTION.in, NAMESPACE: Add dependency on stats.
	3794	* [r526]
	3795	DESCRIPTION.in,
	3796	NAMESPACE:
	3797	Add
	3798	dependency
	3799	on
	3800	stats.
1389	3801
1390	3802	2005-01-12 20:50 warnes
1391	3803
1392		* [r515] DESCRIPTION.in, trunk/gmodels/DESCRIPTION.in,
1393		trunk/gplots/DESCRIPTION.in, trunk/gtools/DESCRIPTION.in: Add
1394		dependency on R 1.9.0+ to prevent poeple from installing on old
1395		versions of R which don't support namespaces.
	3804	* [r515]
	3805	DESCRIPTION.in,
	3806	trunk/gmodels/DESCRIPTION.in,
	3807	trunk/gplots/DESCRIPTION.in,
	3808	trunk/gtools/DESCRIPTION.in:
	3809	Add
	3810	dependency
	3811	on
	3812	R
	3813	1.9.0+
	3814	to
	3815	prevent
	3816	poeple
	3817	from
	3818	installing
	3819	on
	3820	old versions
	3821	of
	3822	R
	3823	which
	3824	don't
	3825	support
	3826	namespaces.
1396	3827
1397	3828	2004-12-27 22:09 warnes
1398	3829
1399		* [r509] man/unmatrix.Rd: Update usage to match code.
	3830	* [r509]
	3831	man/unmatrix.Rd:
	3832	Update
	3833	usage
	3834	to
	3835	match
	3836	code.
1400	3837
1401	3838	2004-12-27 22:05 warnes
1402	3839
1403		* [r508] R/unmatrix.R: Replace 'F' with 'FALSE'.
	3840	* [r508]
	3841	R/unmatrix.R:
	3842	Replace
	3843	'F'
	3844	with
	3845	'FALSE'.
1404	3846
1405	3847	2004-10-12 14:57 warneg
1406	3848
1407		* [r465] R/unmatrix.R, man/unmatrix.Rd: Add unmatrix() function
	3849	* [r465]
	3850	R/unmatrix.R,
	3851	man/unmatrix.Rd:
	3852	Add
	3853	unmatrix()
	3854	function
1408	3855
1409	3856	2004-09-27 21:01 warneg
1410	3857
1411		* [r461] DESCRIPTION, DESCRIPTION.in, NAMESPACE, man/.Rhistory,
1412		trunk/gmodels/DESCRIPTION, trunk/gmodels/DESCRIPTION.in,
1413		trunk/gplots/DESCRIPTION, trunk/gplots/DESCRIPTION.in,
1414		trunk/gplots/man/sinkplot.Rd, trunk/gplots/man/textplot.Rd,
1415		trunk/gregmisc/.Rhistory, trunk/gregmisc/DESCRIPTION,
1416		trunk/gtools/DESCRIPTION, trunk/gtools/DESCRIPTION.in,
1417		trunk/gtools/man/running.Rd: Updated to pass R CMD check.
	3858	* [r461]
	3859	DESCRIPTION,
	3860	DESCRIPTION.in,
	3861	NAMESPACE,
	3862	man/.Rhistory,
	3863	trunk/gmodels/DESCRIPTION,
	3864	trunk/gmodels/DESCRIPTION.in,
	3865	trunk/gplots/DESCRIPTION,
	3866	trunk/gplots/DESCRIPTION.in,
	3867	trunk/gplots/man/sinkplot.Rd,
	3868	trunk/gplots/man/textplot.Rd,
	3869	trunk/gregmisc/.Rhistory,
	3870	trunk/gregmisc/DESCRIPTION,
	3871	trunk/gtools/DESCRIPTION,
	3872	trunk/gtools/DESCRIPTION.in,
	3873	trunk/gtools/man/running.Rd:
	3874	Updated
	3875	to
	3876	pass
	3877	R
	3878	CMD
	3879	check.
1418	3880
1419	3881	2004-09-03 23:08 warneg
1420	3882
1421		* [r455] inst/xls, inst/xls/iris.xls: added to cvs.
	3883	* [r455]
	3884	inst/xls,
	3885	inst/xls/iris.xls:
	3886	added
	3887	to
	3888	cvs.
1422	3889
1423	3890	2004-09-03 22:58 warneg
1424	3891
1425		* [r454] inst/perl/xls2csv.pl: Checkin xls2csv.pl. Should have been
1426		in long ago, must have been an oversight
	3892	* [r454]
	3893	inst/perl/xls2csv.pl:
	3894	Checkin
	3895	xls2csv.pl.
	3896
	3897	Should
	3898	have
	3899	been
	3900	in
	3901	long
	3902	ago,
	3903	must
	3904	have
	3905	been
	3906	an
	3907	oversight
1427	3908
1428	3909	2004-09-03 22:46 warneg
1429	3910
1430		* [r451] R/read.xls.R: Need to look for files using the new package
	3911	* [r451]
	3912	R/read.xls.R:
	3913	Need
	3914	to
	3915	look
	3916	for
	3917	files
	3918	using
	3919	the
	3920	new
	3921	package
1431	3922	name.
1432	3923
1433	3924	2004-09-03 22:43 warneg
1434	3925
1435		* [r449] man/read.xls.Rd: Need to use the new package name when
1436		looking for iris.xls.
	3926	* [r449]
	3927	man/read.xls.Rd:
	3928	Need
	3929	to
	3930	use
	3931	the
	3932	new
	3933	package
	3934	name
	3935	when
	3936	looking
	3937	for
	3938	iris.xls.
1437	3939
1438	3940	2004-09-03 22:42 warneg
1439	3941
1440		* [r448] man/ll.Rd: Add ll.list to the to the list of functions
	3942	* [r448]
	3943	man/ll.Rd:
	3944	Add
	3945	ll.list
	3946	to
	3947	the
	3948	to
	3949	the
	3950	list
	3951	of
	3952	functions
1441	3953	described
1442	3954
1443	3955	2004-09-03 22:42 warneg
1444	3956
1445		* [r447] NAMESPACE: Add ll and friends to the namespace
	3957	* [r447]
	3958	NAMESPACE:
	3959	Add
	3960	ll
	3961	and
	3962	friends
	3963	to
	3964	the
	3965	namespace
1446	3966
1447	3967	2004-09-03 17:27 warneg
1448	3968
1449		* [r446] DESCRIPTION, DESCRIPTION.in, NAMESPACE, R/Args.R,
1450		R/aggregate.table.R, R/combine.R, R/elem.R, R/env.R,
1451		R/interleave.R, R/is.what.R, R/keep.R, R/ll.R, R/matchcols.R,
1452		R/nobs.R, R/read.xls.R, R/rename.vars.R, R/reorder.R, R/trim.R,
1453		man/reorder.Rd, trunk/gmodels/DESCRIPTION,
1454		trunk/gmodels/NAMESPACE, trunk/gmodels/R/CrossTable.R,
1455		trunk/gmodels/R/ci.R, trunk/gmodels/R/estimable.R,
1456		trunk/gmodels/R/fast.prcomp.R, trunk/gmodels/R/fit.contrast.R,
1457		trunk/gmodels/R/glh.test.R, trunk/gmodels/R/make.contrasts.R,
	3969	* [r446]
	3970	DESCRIPTION,
	3971	DESCRIPTION.in,
	3972	NAMESPACE,
	3973	R/Args.R,
	3974	R/aggregate.table.R,
	3975	R/combine.R,
	3976	R/elem.R,
	3977	R/env.R,
	3978	R/interleave.R,
	3979	R/is.what.R,
	3980	R/keep.R,
	3981	R/ll.R,
	3982	R/matchcols.R,
	3983	R/nobs.R,
	3984	R/read.xls.R,
	3985	R/rename.vars.R,
	3986	R/reorder.R,
	3987	R/trim.R,
	3988	man/reorder.Rd,
	3989	trunk/gmodels/DESCRIPTION,
	3990	trunk/gmodels/NAMESPACE,
	3991	trunk/gmodels/R/CrossTable.R,
	3992	trunk/gmodels/R/ci.R,
	3993	trunk/gmodels/R/estimable.R,
	3994	trunk/gmodels/R/fast.prcomp.R,
	3995	trunk/gmodels/R/fit.contrast.R,
	3996	trunk/gmodels/R/glh.test.R,
	3997	trunk/gmodels/R/make.contrasts.R,
1458	3998	trunk/gmodels/man/estimable.Rd,
1459		trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
1460		trunk/gmodels/man/make.contrasts.Rd, trunk/gplots/DESCRIPTION,
1461		trunk/gplots/NAMESPACE, trunk/gplots/R/balloonplot.R,
1462		trunk/gplots/R/bandplot.R, trunk/gplots/R/barplot2.R,
1463		trunk/gplots/R/boxplot.n.R, trunk/gplots/R/colorpanel.R,
1464		trunk/gplots/R/heatmap.2.R, trunk/gplots/R/hist2d.R,
1465		trunk/gplots/R/lowess.R, trunk/gplots/R/ooplot.R,
1466		trunk/gplots/R/overplot.R, trunk/gplots/R/plotCI.R,
1467		trunk/gplots/R/plotmeans.R, trunk/gplots/R/qqnorm.aov.R,
1468		trunk/gplots/R/residplot.R, trunk/gplots/R/rich.color.R,
1469		trunk/gplots/R/sinkplot.R, trunk/gplots/R/smartlegend.R,
1470		trunk/gplots/R/space.R, trunk/gplots/R/textplot.R,
1471		trunk/gplots/R/wapply.R, trunk/gtools/DESCRIPTION,
1472		trunk/gtools/NAMESPACE, trunk/gtools/R/dirichlet.R,
1473		trunk/gtools/R/foldchange.R, trunk/gtools/R/invalid.R,
1474		trunk/gtools/R/mixedsort.R, trunk/gtools/R/oddeven.R,
1475		trunk/gtools/R/permute.R, trunk/gtools/R/quantcut.R,
1476		trunk/gtools/R/running.R, trunk/gtools/man/running.Rd: initial
1477		bundle checkin
	3999	trunk/gmodels/man/fit.contrast.Rd,
	4000	trunk/gmodels/man/glh.test.Rd,
	4001	trunk/gmodels/man/make.contrasts.Rd,
	4002	trunk/gplots/DESCRIPTION,
	4003	trunk/gplots/NAMESPACE,
	4004	trunk/gplots/R/balloonplot.R,
	4005	trunk/gplots/R/bandplot.R,
	4006	trunk/gplots/R/barplot2.R,
	4007	trunk/gplots/R/boxplot.n.R,
	4008	trunk/gplots/R/colorpanel.R,
	4009	trunk/gplots/R/heatmap.2.R,
	4010	trunk/gplots/R/hist2d.R,
	4011	trunk/gplots/R/lowess.R,
	4012	trunk/gplots/R/ooplot.R,
	4013	trunk/gplots/R/overplot.R,
	4014	trunk/gplots/R/plotCI.R,
	4015	trunk/gplots/R/plotmeans.R,
	4016	trunk/gplots/R/qqnorm.aov.R,
	4017	trunk/gplots/R/residplot.R,
	4018	trunk/gplots/R/rich.color.R,
	4019	trunk/gplots/R/sinkplot.R,
	4020	trunk/gplots/R/smartlegend.R,
	4021	trunk/gplots/R/space.R,
	4022	trunk/gplots/R/textplot.R,
	4023	trunk/gplots/R/wapply.R,
	4024	trunk/gtools/DESCRIPTION,
	4025	trunk/gtools/NAMESPACE,
	4026	trunk/gtools/R/dirichlet.R,
	4027	trunk/gtools/R/foldchange.R,
	4028	trunk/gtools/R/invalid.R,
	4029	trunk/gtools/R/mixedsort.R,
	4030	trunk/gtools/R/oddeven.R,
	4031	trunk/gtools/R/permute.R,
	4032	trunk/gtools/R/quantcut.R,
	4033	trunk/gtools/R/running.R,
	4034	trunk/gtools/man/running.Rd:
	4035	initial
	4036	bundle
	4037	checkin
1478	4038
1479	4039	2004-09-02 17:14 warneg
1480	4040
1481		* [r442] DESCRIPTION, DESCRIPTION.in, NAMESPACE, man/.Rhistory,
1482		trunk/gmodels/DESCRIPTION, trunk/gmodels/DESCRIPTION.in,
1483		trunk/gmodels/NAMESPACE, trunk/gplots/DESCRIPTION,
1484		trunk/gplots/DESCRIPTION.in, trunk/gplots/NAMESPACE,
1485		trunk/gplots/man/1, trunk/gplots/man/residplot.Rd,
1486		trunk/gregmisc/.Rhistory, trunk/gtools/DESCRIPTION,
1487		trunk/gtools/DESCRIPTION.in, trunk/gtools/NAMESPACE: Initial
	4041	* [r442]
	4042	DESCRIPTION,
	4043	DESCRIPTION.in,
	4044	NAMESPACE,
	4045	man/.Rhistory,
	4046	trunk/gmodels/DESCRIPTION,
	4047	trunk/gmodels/DESCRIPTION.in,
	4048	trunk/gmodels/NAMESPACE,
	4049	trunk/gplots/DESCRIPTION,
	4050	trunk/gplots/DESCRIPTION.in,
	4051	trunk/gplots/NAMESPACE,
	4052	trunk/gplots/man/1,
	4053	trunk/gplots/man/residplot.Rd,
	4054	trunk/gregmisc/.Rhistory,
	4055	trunk/gtools/DESCRIPTION,
	4056	trunk/gtools/DESCRIPTION.in,
	4057	trunk/gtools/NAMESPACE:
	4058	Initial
1488	4059	revision
1489	4060
1490	4061	2004-08-27 21:57 warnes
1491	4062
1492		* [r441] R/reorder.R, man/reorder.Rd, trunk/gtools/R/mixedsort.R,
1493		trunk/gtools/man/mixedsort.Rd: Fixed bug in mixedsort, and
1494		modified reorder.factor to use mixedsort.
	4063	* [r441]
	4064	R/reorder.R,
	4065	man/reorder.Rd,
	4066	trunk/gtools/R/mixedsort.R,
	4067	trunk/gtools/man/mixedsort.Rd:
	4068	Fixed
	4069	bug
	4070	in
	4071	mixedsort,
	4072	and
	4073	modified
	4074	reorder.factor
	4075	to
	4076	use
	4077	mixedsort.
1495	4078
1496	4079	2004-07-29 15:27 warnes
1497	4080
1498		* [r427] inst/perl, inst/perl/IO, inst/perl/IO/AtomicFile.pm,
1499		inst/perl/IO/InnerFile.pm, inst/perl/IO/Lines.pm,
1500		inst/perl/IO/Scalar.pm, inst/perl/IO/Scalar.pm.html,
1501		inst/perl/IO/ScalarArray.pm, inst/perl/IO/Stringy.pm,
1502		inst/perl/IO/Wrap.pm, inst/perl/IO/WrapTie.pm, inst/perl/OLE,
1503		inst/perl/OLE/Storage_Lite.pm, inst/perl/Spreadsheet,
	4081	* [r427]
	4082	inst/perl,
	4083	inst/perl/IO,
	4084	inst/perl/IO/AtomicFile.pm,
	4085	inst/perl/IO/InnerFile.pm,
	4086	inst/perl/IO/Lines.pm,
	4087	inst/perl/IO/Scalar.pm,
	4088	inst/perl/IO/Scalar.pm.html,
	4089	inst/perl/IO/ScalarArray.pm,
	4090	inst/perl/IO/Stringy.pm,
	4091	inst/perl/IO/Wrap.pm,
	4092	inst/perl/IO/WrapTie.pm,
	4093	inst/perl/OLE,
	4094	inst/perl/OLE/Storage_Lite.pm,
	4095	inst/perl/Spreadsheet,
1504	4096	inst/perl/Spreadsheet/ParseExcel,
1505	4097	inst/perl/Spreadsheet/ParseExcel.pm,
1506	4098	inst/perl/Spreadsheet/ParseExcel/Dump.pm,

1509	4101	inst/perl/Spreadsheet/ParseExcel/FmtJapan2.pm,
1510	4102	inst/perl/Spreadsheet/ParseExcel/FmtUnicode.pm,
1511	4103	inst/perl/Spreadsheet/ParseExcel/SaveParser.pm,
1512		inst/perl/Spreadsheet/ParseExcel/Utility.pm: Add perl modules to
	4104	inst/perl/Spreadsheet/ParseExcel/Utility.pm:
	4105	Add
	4106	perl
	4107	modules
	4108	to
1513	4109	CVS.
1514	4110
1515	4111	2004-07-27 14:29 warnes
1516	4112
1517		* [r425] man/read.xls.Rd: Fix typos/spelling.
	4113	* [r425]
	4114	man/read.xls.Rd:
	4115	Fix
	4116	typos/spelling.
1518	4117
1519	4118	2004-07-27 14:25 warnes
1520	4119
1521		* [r424] man/read.xls.Rd: Add note that Perl is required for
1522		read.xls to work properly.
	4120	* [r424]
	4121	man/read.xls.Rd:
	4122	Add
	4123	note
	4124	that
	4125	Perl
	4126	is
	4127	required
	4128	for
	4129	read.xls
	4130	to
	4131	work
	4132	properly.
1523	4133
1524	4134	2004-07-16 19:28 warnes
1525	4135
1526		* [r420] R/read.xls.R: Remove the temporary csv file if reading it
1527		in fails.
	4136	* [r420]
	4137	R/read.xls.R:
	4138	Remove
	4139	the
	4140	temporary
	4141	csv
	4142	file
	4143	if
	4144	reading
	4145	it
	4146	in
	4147	fails.
1528	4148
1529	4149	2004-06-22 17:09 warnes
1530	4150
1531		* [r377] R/ll.R, man/ll.Rd: Add S3 methods for data frames and
	4151	* [r377]
	4152	R/ll.R,
	4153	man/ll.Rd:
	4154	Add
	4155	S3
	4156	methods
	4157	for
	4158	data
	4159	frames
	4160	and
1532	4161	lists.
1533	4162
1534	4163	2004-06-08 03:54 warnes
1535	4164
1536		* [r371] inst/bin, inst/bin/xls2csv, inst/bin/xls2csv.bat: Moved
1537		from gregmisc/src/.
	4165	* [r371]
	4166	inst/bin,
	4167	inst/bin/xls2csv,
	4168	inst/bin/xls2csv.bat:
	4169	Moved
	4170	from
	4171	gregmisc/src/.
1538	4172
1539	4173	2004-06-08 03:44 warnes
1540	4174
1541		* [r370] inst/tools: Remove the files in src, instead provide
1542		"pre-installed" perl packages
1543		in inst/perl.
	4175	* [r370]
	4176	inst/tools:
	4177	Remove
	4178	the
	4179	files
	4180	in
	4181	src,
	4182	instead
	4183	provide
	4184	"pre-installed"
	4185	perl
	4186	packages in
	4187	inst/perl.
1544	4188
1545	4189	2004-06-05 05:42 warnes
1546	4190
1547		* [r365] inst/tools/Makefile: Fix typo.
	4191	* [r365]
	4192	inst/tools/Makefile:
	4193	Fix
	4194	typo.
1548	4195
1549	4196	2004-06-05 05:34 warnes
1550	4197
1551		* [r364] inst/tools/Makefile: Fix Unix makefile so that it works
1552		when invoked directly.
	4198	* [r364]
	4199	inst/tools/Makefile:
	4200	Fix
	4201	Unix
	4202	makefile
	4203	so
	4204	that
	4205	it
	4206	works
	4207	when
	4208	invoked
	4209	directly.
1553	4210
1554	4211	2004-06-05 05:30 warnes
1555	4212
1556		* [r363] inst/tools/Makefile: Fixes for Windows
	4213	* [r363]
	4214	inst/tools/Makefile:
	4215	Fixes
	4216	for
	4217	Windows
1557	4218
1558	4219	2004-06-05 05:22 warnes
1559	4220
1560		* [r362] man/read.xls.Rd: Minor enhancment to read.xls example.
	4221	* [r362]
	4222	man/read.xls.Rd:
	4223	Minor
	4224	enhancment
	4225	to
	4226	read.xls
	4227	example.
1561	4228
1562	4229	2004-06-05 04:05 warnes
1563	4230
1564		* [r361] inst/tools/Makefile, inst/xls, trunk/gregmisc/DESCRIPTION,
1565		trunk/gregmisc/NEWS: - Merge Makefile.win into Makefile.
1566		Makefile.win now just redirects
1567		to Makefile.
1568		- Update xls2csv.bat and xls2csv shell script to correctly obtain
1569		thier installion path and infer the location of the perl code and
1570		libraries.
1571		- The xls2csv.pl script now assumes that the libraries it needs
	4231	* [r361]
	4232	inst/tools/Makefile,
	4233	inst/xls,
	4234	trunk/gregmisc/DESCRIPTION,
	4235	trunk/gregmisc/NEWS:
	4236	-
	4237	Merge
	4238	Makefile.win
	4239	into
	4240	Makefile.
	4241
	4242	Makefile.win
	4243	now
	4244	just
	4245	redirects
	4246
	4247	to
	4248	Makefile. -
	4249	Update
	4250	xls2csv.bat
	4251	and
	4252	xls2csv
	4253	shell
	4254	script
	4255	to
	4256	correctly
	4257	obtain
	4258
	4259	thier
	4260	installion
	4261	path
	4262	and
	4263	infer
	4264	the
	4265	location
	4266	of
	4267	the
	4268	perl
	4269	code
	4270	and
	4271
	4272	libraries. -
	4273	The
	4274	xls2csv.pl
	4275	script
	4276	now
	4277	assumes
	4278	that
	4279	the
	4280	libraries
	4281	it
	4282	needs
1572	4283	are
1573		installed into the same directory where it is.
	4284
	4285	installed
	4286	into
	4287	the
	4288	same
	4289	directory
	4290	where
	4291	it
	4292	is.
1574	4293
1575	4294	2004-06-04 20:42 warnes
1576	4295
1577		* [r360] inst/tools/Makefile: More changes, indended to improve
1578		installation reliabilty and to make
1579		Makefile and Makefile.win as similar as possible.
	4296	* [r360]
	4297	inst/tools/Makefile:
	4298	More
	4299	changes,
	4300	indended
	4301	to
	4302	improve
	4303	installation
	4304	reliabilty
	4305	and
	4306	to
	4307	make Makefile
	4308	and
	4309	Makefile.win
	4310	as
	4311	similar
	4312	as
	4313	possible.
1580	4314
1581	4315	2004-05-27 22:39 warnes
1582	4316
1583		* [r358] inst/tools/Makefile: Clean should remove scripts from
1584		source directory.
	4317	* [r358]
	4318	inst/tools/Makefile:
	4319	Clean
	4320	should
	4321	remove
	4322	scripts
	4323	from
	4324	source
	4325	directory.
1585	4326
1586	4327	2004-05-27 22:38 warnes
1587	4328
1588		* [r357] inst/perl: Moved to xls2csv.pl.in.
	4329	* [r357]
	4330	inst/perl:
	4331	Moved
	4332	to
	4333	xls2csv.pl.in.
1589	4334
1590	4335	2004-05-27 22:20 warnes
1591	4336
1592		* [r354] inst/perl/xls2csv.pl, inst/tools/Makefile: More fixes.
	4337	* [r354]
	4338	inst/perl/xls2csv.pl,
	4339	inst/tools/Makefile:
	4340	More
	4341	fixes.
1593	4342
1594	4343	2004-05-27 22:20 warnes
1595	4344
1596		* [r353] man/elem.Rd: Fix missing brace.
	4345	* [r353]
	4346	man/elem.Rd:
	4347	Fix
	4348	missing
	4349	brace.
1597	4350
1598	4351	2004-05-27 21:43 warnes
1599	4352
1600		* [r352] man/elem.Rd: Add explicit package name to see also links.
	4353	* [r352]
	4354	man/elem.Rd:
	4355	Add
	4356	explicit
	4357	package
	4358	name
	4359	to
	4360	see
	4361	also
	4362	links.
1601	4363
1602	4364	2004-05-27 21:24 warnes
1603	4365
1604		* [r351] inst/perl/xls2csv.pl, inst/tools/Makefile: More xls2csv
1605		perl module support changes.
	4366	* [r351]
	4367	inst/perl/xls2csv.pl,
	4368	inst/tools/Makefile:
	4369	More
	4370	xls2csv
	4371	perl
	4372	module
	4373	support
	4374	changes.
1606	4375
1607	4376	2004-05-27 20:37 warnes
1608	4377
1609		* [r350] inst/tools/Makefile: More changes to fix local
1610		installation of perl modules.
	4378	* [r350]
	4379	inst/tools/Makefile:
	4380	More
	4381	changes
	4382	to
	4383	fix
	4384	local
	4385	installation
	4386	of
	4387	perl
	4388	modules.
1611	4389
1612	4390	2004-05-26 13:40 warnes
1613	4391
1614		* [r345] man/read.xls.Rd, trunk/gtools/man/combinations.Rd: Escape
1615		underscores in email addresses so Latex is happy.
	4392	* [r345]
	4393	man/read.xls.Rd,
	4394	trunk/gtools/man/combinations.Rd:
	4395	Escape
	4396	underscores
	4397	in
	4398	email
	4399	addresses
	4400	so
	4401	Latex
	4402	is
	4403	happy.
1616	4404
1617	4405	2004-05-25 18:45 warnes
1618	4406
1619		* [r339] inst/perl/xls2csv.pl, inst/tools/Makefile: More changes to
1620		xls2csv code.
	4407	* [r339]
	4408	inst/perl/xls2csv.pl,
	4409	inst/tools/Makefile:
	4410	More
	4411	changes
	4412	to
	4413	xls2csv
	4414	code.
1621	4415
1622	4416	2004-05-25 17:35 warnes
1623	4417
1624		* [r337] R/Args.R, man/Args.Rd: Add Args() function contributed by
1625		Arni Magnusson <arnima@u.washington.edu>.
	4418	* [r337]
	4419	R/Args.R,
	4420	man/Args.Rd:
	4421	Add
	4422	Args()
	4423	function
	4424	contributed
	4425	by
	4426	Arni
	4427	Magnusson
	4428	<arnima@u.washington.edu>.
1626	4429
1627	4430	2004-05-25 17:14 warnes
1628	4431
1629		* [r335] R/read.xls.R: - Change to call perl directly rather than
1630		depending on the installed
1631		shell script. This should make the code more portable to
1632		MS-Windows
1633		systes.
1634
1635		- Add additional commants..
	4432	* [r335]
	4433	R/read.xls.R:
	4434	-
	4435	Change
	4436	to
	4437	call
	4438	perl
	4439	directly
	4440	rather
	4441	than
	4442	depending
	4443	on
	4444	the
	4445	installed shell
	4446	script.
	4447
	4448	This
	4449	should
	4450	make
	4451	the
	4452	code
	4453	more
	4454	portable
	4455	to
	4456	MS-Windows systes. -
	4457	Add
	4458	additional
	4459	commants..
1636	4460
1637	4461	2004-05-25 14:53 warnes
1638	4462
1639		* [r332] inst/tools/Makefile: Makefile now modifies xls2csv.bat
1640		xls2csv.pl and xls2csv to contain an
1641		explicit path to the perl script/libraries.
	4463	* [r332]
	4464	inst/tools/Makefile:
	4465	Makefile
	4466	now
	4467	modifies
	4468	xls2csv.bat
	4469	xls2csv.pl
	4470	and
	4471	xls2csv
	4472	to
	4473	contain
	4474	an explicit
	4475	path
	4476	to
	4477	the
	4478	perl
	4479	script/libraries.
1642	4480
1643	4481	2004-05-25 11:41 warnes
1644	4482
1645		* [r330] inst/tools/Makefile: R CMD build calls the clean target to
1646		purge build files from the
1647		source tree when packaging. To get use this behavior correctly,
	4483	* [r330]
	4484	inst/tools/Makefile:
	4485	R
	4486	CMD
	4487	build
	4488	calls
	4489	the
	4490	clean
	4491	target
	4492	to
	4493	purge
	4494	build
	4495	files
	4496	from
	4497	the source
	4498	tree
	4499	when
	4500	packaging.
	4501
	4502	To
	4503	get
	4504	use
	4505	this
	4506	behavior
	4507	correctly,
	4508	I've renamed
	4509	the
	4510	clean
	4511	target
	4512	to
	4513	cleanup
	4514	and
	4515	distclean
	4516	target
	4517	to
	4518	clean.
	4519
	4520	2004-05-25 11:35 warnes
	4521
	4522	* [r329]
	4523	R/read.xls.R,
	4524	man/read.xls.Rd:
	4525	Add
	4526	read.xls(),
	4527	a
	4528	function
	4529	to
	4530	read
	4531	Microsoft
	4532	Excel
	4533	files
	4534	by translating
	4535	them
	4536	to
	4537	csv
	4538	files
	4539	via
	4540	the
	4541	xls2csv.pl
	4542	script.
	4543
	4544	2004-05-25 02:46 warnes
	4545
	4546	* [r326]
	4547	inst/tools/Makefile:
	4548	More
	4549	fixes.
	4550
	4551	Seems
	4552	to
	4553	work
	4554	now.
	4555
	4556	2004-05-24 23:46 warnes
	4557
	4558	* [r325]
	4559	inst/perl,
	4560	inst/perl/xls2csv.pl,
	4561	inst/tools,
	4562	inst/tools/Makefile,
	4563	inst/xls,
	4564	inst/xls/iris.xls:
	4565	Add
	4566	files
	4567	to
	4568	enable
	4569	inclusion
	4570	and
	4571	installation
	4572	of
	4573	xls2csv.pl
	4574	as
	4575	part of
	4576	the
	4577	package.
	4578
	4579	2004-04-01 20:23 warnes
	4580
	4581	* [r312]
	4582	R/rename.vars.R,
	4583	man/rename.vars.Rd:
	4584	Add
	4585	function
	4586	remove.vars().
	4587
	4588	2004-03-26 22:31 warnes
	4589
	4590	* [r307]
	4591	man/reorder.Rd:
	4592	Contents
	4593	of
	4594	package
	4595	'mva'
	4596	moveed
	4597	to
	4598	'stats'.
	4599
	4600	2004-03-26 22:02 warnes
	4601
	4602	* [r298]
	4603	R/is.what.R:
	4604	-
	4605	Fix
	4606	is.what()
	4607	for
	4608	use
	4609	under
	4610	R
	4611	1.9.0 -
	4612	is.what()
	4613	now
	4614	uses
	4615	is.*
	4616	functions
	4617	found
	4618	in
	4619	any
	4620	attached
	4621	frame
	4622
	4623	2004-01-21 12:06 warnes
	4624
	4625	* [r282]
	4626	R/reorder.R,
	4627	man/reorder.Rd:
	4628	-
	4629	Add
	4630	...
	4631	argument
	4632	to
	4633	match
	4634	generic
	4635	provided
	4636	in
	4637	mva.
	4638
	4639	2004-01-19 22:45 warnes
	4640
	4641	* [r275]
	4642	R/elem.R,
	4643	R/env.R,
	4644	R/ll.R,
	4645	man/keep.Rd,
	4646	man/ll.Rd:
	4647	-
	4648	Integrated
	4649	(partial)
	4650	patch
	4651	submitted
	4652	by
	4653	Arni
	4654	Magnusson
	4655	to
	4656	clarify
	4657	help
	4658	text. -
	4659	Modifed
	4660	code
	4661	to
	4662	use
	4663	match.arg().
	4664
	4665	2003-12-15 21:07 warnes
	4666
	4667	* [r271]
	4668	R/env.R:
	4669	-
	4670	Applied
	4671	patch
	4672	from
	4673	Arni
	4674	that
	4675	fixed
	4676	a
	4677	bug
	4678	that
	4679	caused
	4680	env()
	4681	to
	4682	crash
	4683
	4684	if
	4685	any
	4686	environment
	4687	was
	4688	completely
	4689	empty
	4690
	4691	2003-12-03 02:46 warnes
	4692
	4693	* [r253]
	4694	man/elem.Rd,
	4695	man/ll.Rd,
	4696	trunk/gplots/man/lowess.Rd,
	4697	trunk/gplots/man/textplot.Rd,
	4698	trunk/gplots/man/wapply.Rd,
	4699	trunk/gtools/man/foldchange.Rd:
	4700	-
	4701	match
	4702	function
	4703	argument
	4704	defaults
	4705	with
	4706	'usage'
	4707
	4708	2003-12-02 17:00 warnes
	4709
	4710	* [r249]
	4711	man/ll.Rd:
	4712	Add
	4713	one
	4714	argument,
	4715	to
	4716	match
	4717	code.
	4718
	4719	2003-12-01 15:56 warnes
	4720
	4721	* [r244]
	4722	R/elem.R,
	4723	R/env.R,
	4724	R/is.what.R,
	4725	R/keep.R,
	4726	R/ll.R:
	4727	-
	4728	Apply
	4729	changes
	4730	submitted
	4731	by
	4732	Arni
	4733	Magnusson
	4734
	4735	2003-11-19 14:54 warnes
	4736
	4737	* [r229]
	4738	man/env.Rd,
	4739	man/is.what.Rd,
	4740	man/keep.Rd,
	4741	man/ll.Rd:
	4742	Changes
	4743	to
	4744	pass
	4745	R
	4746	CMD
	4747	check.
	4748
	4749	2003-11-18 18:45 warnes
	4750
	4751	* [r224]
	4752	R/elem.R,
	4753	R/env.R,
	4754	R/is.what.R,
	4755	R/keep.R,
	4756	R/ll.R,
	4757	trunk/gplots/R/overplot.R:
	4758	-
	4759	Convert
	4760	from
	4761	MS-Dos
	4762	to
	4763	Unix
	4764	line
	4765	endings. -
	4766	Reformat
	4767	to
	4768	80
	4769	columns.
	4770
	4771	2003-11-17 22:09 warnes
	4772
	4773	* [r223]
	4774	man/elem.Rd:
	4775	Replace
	4776	'T'
	4777	with
	4778	'TRUE'
	4779	to
	4780	remove
	4781	R
	4782	CMD
	4783	check
	4784	error.
	4785
	4786	2003-11-17 22:09 warnes
	4787
	4788	* [r222]
	4789	man/aggregate.table.Rd:
	4790	Fix
	4791	syntax
	4792	error.
	4793
	4794	2003-11-10 22:11 warnes
	4795
	4796	* [r220]
	4797	R/elem.R,
	4798	R/env.R,
	4799	R/is.what.R,
	4800	R/keep.R,
	4801	R/ll.R,
	4802	man/elem.Rd,
	4803	man/env.Rd,
	4804	man/is.what.Rd,
	4805	man/keep.Rd,
	4806	man/ll.Rd,
	4807	trunk/gplots/R/heatmap.2.R,
	4808	trunk/gplots/R/overplot.R,
	4809	trunk/gplots/R/plotmeans.R,
	4810	trunk/gplots/R/space.R,
	4811	trunk/gplots/R/wapply.R,
	4812	trunk/gregmisc/DESCRIPTION,
	4813	trunk/gtools/R/capture.R,
	4814	trunk/gtools/man/capture.Rd:
	4815	-
	4816	Add
	4817	files
	4818	contributed
	4819	by
	4820	Arni
	4821	Magnusson
	4822
	4823	<arnima@u.washington.edu>.
	4824	As
	4825	well
	4826	as
	4827	some
	4828	of
	4829	my
	4830	own.
	4831
	4832	2003-06-07 17:58 warnes
	4833
	4834	* [r198]
	4835	man/aggregate.table.Rd,
	4836	man/interleave.Rd:
	4837	-
	4838	Fixed
	4839	error
	4840	in
	4841	examples.
	4842
	4843	Had
	4844	sqrt(var(x)/(n-1))
	4845	for
	4846	the
	4847	standard
	4848
	4849	error
	4850	of
	4851	the
	4852	mean
	4853	instead
	4854	of
	4855	sqrt(var(x)/n).
	4856
	4857	2003-05-23 18:32 warnes
	4858
	4859	* [r197]
	4860	R/matchcols.R,
	4861	man/matchcols.Rd:
	4862	-
	4863	Fixed
	4864	typos
	4865
	4866	2003-05-23 18:14 warnes
	4867
	4868	* [r196]
	4869	R/matchcols.R,
	4870	man/matchcols.Rd,
	4871	trunk/gtools/R/logit.R,
	4872	trunk/gtools/man/logit.Rd:
	4873	-
	4874	library()
	4875	backported
	4876	from
	4877	1.7-devel.
	4878
	4879	This
	4880	version
	4881	of
	4882	the
	4883	function
	4884
	4885	adds
	4886	the
	4887	"pos="
	4888	argument
	4889	to
	4890	specify
	4891	where
	4892	in
	4893	the
	4894	search
	4895	path
	4896	the
	4897
	4898	library
	4899	should
	4900	be
	4901	placed. -
	4902	updated
	4903	.First.lib
	4904	to
	4905	use
	4906	library(...pos=3)
	4907	for
	4908	MASS
	4909	to
	4910	avoid
	4911	the
	4912
	4913	'genotype'
	4914	data
	4915	set
	4916	in
	4917	MASS
	4918	from
	4919	masking
	4920	the
	4921	genotype
	4922	funciton
	4923	in
	4924
	4925	genetics
	4926	when
	4927	it
	4928	loads
	4929	gregmisc -
	4930	Added
	4931	logit()
	4932	inv.logit()
	4933	matchcols()
	4934	function
	4935	and
	4936	corresponding
	4937	docs
	4938
	4939	2003-05-20 16:03 warnes
	4940
	4941	* [r195]
	4942	R/interleave.R:
	4943	-
	4944	Omit
	4945	NULL
	4946	variables.
	4947
	4948	2003-05-20 13:16 warnes
	4949
	4950	* [r194]
	4951	R/trim.R,
	4952	man/trim.Rd,
	4953	trunk/gregmisc/DESCRIPTION:
	4954	-
	4955	Added
	4956	function
	4957	trim()
	4958	and
	4959	assocated
	4960	docs.
	4961
	4962	2003-04-22 15:42 warnes
	4963
	4964	* [r188]
	4965	R/reorder.R,
	4966	man/reorder.Rd:
	4967	-
	4968	The
	4969	mva
	4970	package
	4971	(which
	4972	is
	4973	part
	4974	of
	4975	recommended)
	4976	now
	4977	provides
	4978	a
	4979
	4980	generic
	4981	'reorder'
	4982	function.
	4983
	4984	Consequently,
	4985	the
	4986	'reorder'
	4987	function
	4988
	4989	here
	4990	has
	4991	been
	4992	renamed
	4993	to
	4994	'reorder.factor'. -
	4995	Removed
	4996	check
	4997	of
	4998	whether
	4999	the
	5000	argument
	5001	is
	5002	a
	5003	factor
	5004	object.
	5005
	5006	2003-03-03 17:48 warnes
	5007
	5008	* [r165]
	5009	man/reorder.Rd:
	5010	-
	5011	Updated
	5012	to
	5013	match
	5014	reorder.Rd
	5015	which
	5016	was
	5017	exetended
	5018	to
	5019	handle
	5020	factor
	5021
	5022	label
	5023	names
	5024	in
	5025	addition
	5026	to
	5027	numeric
	5028	indices.
	5029
	5030	2003-03-03 17:24 warnes
	5031
	5032	* [r164]
	5033	R/reorder.R:
	5034	-
	5035	Added
	5036	handling
	5037	of
	5038	factor
	5039	level
	5040	names
	5041	in
	5042	addition
	5043	to
	5044	numeric
	5045	indexes.
	5046
	5047	2002-09-23 14:02 warnes
	5048
	5049	* [r118]
	5050	inst,
	5051	inst/doc,
	5052	inst/doc/Rnews.dtx,
	5053	inst/doc/Rnews.sty,
	5054	inst/doc/gregmisc.pdf,
	5055	inst/doc/gregmisc.tex:
	5056	Added
	5057	inst/doc
	5058	directory
	5059	and
	5060	contents
	5061	to
	5062	CVS.
	5063
	5064	2002-09-23 13:59 warnes
	5065
	5066	* [r117]
	5067	R/aggregate.table.R,
	5068	R/combine.R,
	5069	R/interleave.R,
	5070	R/nobs.R,
	5071	man/aggregate.table.Rd,
	5072	man/combine.Rd,
	5073	man/interleave.Rd,
	5074	man/nobs.Rd,
	5075	man/rename.vars.Rd,
	5076	man/reorder.Rd,
	5077	trunk/gmodels/R/ci.R,
	5078	trunk/gmodels/man/estimable.Rd,
	5079	trunk/gmodels/man/glh.test.Rd,
	5080	trunk/gplots/R/boxplot.n.R,
	5081	trunk/gplots/R/hist2d.R,
	5082	trunk/gplots/R/lowess.R,
	5083	trunk/gplots/R/residplot.R,
	5084	trunk/gplots/man/bandplot.Rd,
	5085	trunk/gplots/man/hist2d.Rd,
	5086	trunk/gplots/man/lowess.Rd,
	5087	trunk/gplots/man/plotCI.Rd,
	5088	trunk/gplots/man/space.Rd,
	5089	trunk/gtools/man/combinations.Rd,
	5090	trunk/gtools/man/quantcut.Rd:
	5091	-
	5092	Modified
	5093	all
	5094	files
	5095	to
	5096	include
	5097	CVS
	5098	Id
	5099	and
	5100	Log
	5101	tags.
	5102
	5103	2002-08-01 18:06 warnes
	5104
	5105	* [r112]
	5106	R/reorder.R:
	5107	Added
	5108	reorder()
	5109	function
	5110	to
	5111	reorder
	5112	the
	5113	levels
	5114	of
	5115	a
	5116	factor.
	5117
	5118	2002-04-09 00:51 warneg
	5119
	5120	* [r109]
	5121	R/rename.vars.R,
	5122	man/aggregate.table.Rd,
	5123	man/interleave.Rd,
	5124	man/reorder.Rd,
	5125	trunk/gmodels/R/ci.R,
	5126	trunk/gmodels/R/estimable.R,
	5127	trunk/gmodels/R/glh.test.R,
	5128	trunk/gmodels/man/glh.test.Rd,
	5129	trunk/gplots/R/bandplot.R,
	5130	trunk/gplots/R/boxplot.n.R,
	5131	trunk/gplots/R/hist2d.R,
	5132	trunk/gplots/R/plot.lm.R,
	5133	trunk/gplots/R/plotCI.R,
	5134	trunk/gplots/R/plotmeans.R,
	5135	trunk/gplots/R/residplot.R,
	5136	trunk/gplots/R/space.R,
	5137	trunk/gplots/R/wapply.R,
	5138	trunk/gplots/man/bandplot.Rd,
	5139	trunk/gplots/man/boxplot.n.Rd,
	5140	trunk/gplots/man/hist2d.Rd,
	5141	trunk/gplots/man/plotmeans.Rd,
	5142	trunk/gplots/man/space.Rd,
	5143	trunk/gplots/man/wapply.Rd,
	5144	trunk/gregmisc/DESCRIPTION,
	5145	trunk/gtools/R/combinations.R,
	5146	trunk/gtools/man/combinations.Rd,
	5147	trunk/gtools/man/running.Rd:
	5148	Checkin
	5149	for
	5150	version
	5151	0.5.3
	5152
	5153	2002-04-09 00:46 warneg
	5154
	5155	* [r108]
	5156	R/interleave.R:
	5157	-
	5158	Properly
	5159	handle
	5160	case
	5161	when
	5162	some
	5163	or
	5164	all
	5165	arguments
	5166	are
	5167	vectors.
	5168
	5169	2002-03-26 21:22 warneg
	5170
	5171	* [r104]
	5172	man/reorder.Rd,
	5173	trunk/gmodels/R/ci.R,
	5174	trunk/gmodels/R/glh.test.R,
	5175	trunk/gmodels/man/ci.Rd,
	5176	trunk/gmodels/man/glh.test.Rd,
	5177	trunk/gplots/R/lowess.R,
	5178	trunk/gplots/man/lowess.Rd:
	5179	-
	5180	Changed
	5181	methods
	5182	to
	5183	include
	5184	'...'
	5185	to
	5186	match
	5187	the
	5188	generic. -
	5189	Updated
	5190	for
	5191	version
	5192	0.5.1
	5193
	5194	2002-03-26 19:29 warneg
	5195
	5196	* [r102]
	5197	R/nobs.R:
	5198	Added
	5199	...
	5200	to
	5201	methods.
	5202
	5203	2002-03-26 19:29 warneg
	5204
	5205	* [r101]
	5206	man/nobs.Rd:
	5207	Updated
	5208	to
	5209	add
	5210	...
	5211	parameter
	5212	to
	5213	function
	5214	calls.
	5215
	5216	2002-03-26 15:27 warneg
	5217
	5218	* [r98]
	5219	man/reorder.Rd:
	5220	Initial
	5221	checkin.
	5222
	5223	2002-03-26 14:28 warneg
	5224
	5225	* [r95]
	5226	R/nobs.R:
	5227	-
	5228	Added
	5229	CVS
	5230	tags
	5231
	5232	2002-02-21 21:45 warneg
	5233
	5234	* [r87]
	5235	R/aggregate.table.R:
	5236	-
	5237	Fixed
	5238	bug
	5239	where
	5240	row
	5241	and
	5242	column
	5243	labels
	5244	didn't
	5245	always
	5246	correspond
	5247	to
	5248	the contents.
	5249
	5250	This
	5251	only
	5252	occured
	5253	when
	5254	a
	5255	factor
	5256	was
	5257	used
	5258	for
	5259	by1
	5260	or
	5261	by2
	5262	and the
	5263	factors
	5264	levels
	5265	weren't
	5266	in
	5267	the
	5268	default
	5269	sort
	5270	order.
	5271
	5272	2002-02-20 22:10 warneg
	5273
	5274	* [r86]
	5275	R/aggregate.table.R:
	5276	New
	5277	function.
	5278
	5279	2002-02-20 22:09 warneg
	5280
	5281	* [r85]
	5282	man/aggregate.table.Rd:
	5283	Initial
	5284	checkin.
	5285
	5286	2002-02-20 21:42 warneg
	5287
	5288	* [r84]
	5289	R/interleave.R,
	5290	man/interleave.Rd:
	5291	Initial
	5292	checkin.
	5293
	5294	2002-02-20 21:31 warneg
	5295
	5296	* [r83]
	5297	man/nobs.Rd:
	5298	Noted
	5299	that
	5300	specialized
	5301	methods
	5302	exist.
	5303
	5304	2002-02-20 21:29 warneg
	5305
	5306	* [r82]
	5307	man/nobs.Rd:
	5308	Incorrectly
	5309	had
	5310	contents
	5311	of
	5312	nobs.R
	5313	here
	5314	instead
	5315	of
	5316	help
	5317	text.
	5318
	5319	Corrected.
	5320
	5321	2002-02-20 20:09 warneg
	5322
	5323	* [r81]
	5324	man/rename.vars.Rd,
	5325	trunk/gmodels/man/ci.Rd,
	5326	trunk/gmodels/man/estimable.Rd,
	5327	trunk/gmodels/man/glh.test.Rd,
	5328	trunk/gplots/man/lowess.Rd,
	5329	trunk/gplots/man/plotCI.Rd,
	5330	trunk/gplots/man/space.Rd:
	5331	Minor
	5332	changes,
	5333	typo
	5334	and
	5335	formatting
	5336	fixes.
	5337
	5338	2002-02-20 20:03 warneg
	5339
	5340	* [r79]
	5341	R/nobs.R,
	5342	man/nobs.Rd:
	5343	-
	5344	initial
	5345	checkin.
	5346
	5347	2001-12-12 01:39 warneg
	5348
	5349	* [r53]
	5350	man/rename.vars.Rd:
	5351	Added
	5352	omitted
	5353	documentaton
	5354	for
	5355	'info'
	5356	parameter.
	5357
	5358	Changed
	5359	example
	5360	code not
	5361	to
	5362	use
	5363	'Orthodont'
	5364	data
	5365	set
	5366	so
	5367	that
	5368	the
	5369	nlme
	5370	package
	5371	is
	5372	not
	5373	required.
	5374
	5375	2001-12-08 01:54 warneg
	5376
	5377	* [r47]
	5378	R/rename.vars.R:
	5379	Changed
	5380	'T'
	5381	to
	5382	'TRUE'
	5383	in
	5384	parameter
	5385	list.
	5386
	5387	2001-12-07 23:33 warneg
	5388
	5389	* [r45]
	5390	man/rename.vars.Rd:
	5391	-
	5392	Fixed
	5393	see
	5394	also
	5395	link.
	5396
	5397	Mis-typed
	5398	'data.frame'
	5399	as
	5400	'dataframe'.
	5401
	5402	2001-12-07 22:55 warneg
	5403
	5404	* [r44]
	5405	R/rename.vars.R:
	5406	Added
	5407	attribution.
	5408
	5409	2001-12-07 22:49 warneg
	5410
	5411	* [r43]
	5412	man/rename.vars.Rd:
	5413	Added
	5414	proper
	5415	attribution
	5416	to
	5417	Don
	5418	MacQueen.
	5419
	5420	2001-12-07 21:48 warneg
	5421
	5422	* [r39]
	5423	man/rename.vars.Rd:
	5424	Initial
	5425	checkin.
	5426
	5427	Unfortunately,
1648	5428	I've
1649		renamed the clean target to cleanup and distclean target to
1650		clean.
1651
1652		2004-05-25 11:35 warnes
1653
1654		* [r329] R/read.xls.R, man/read.xls.Rd: Add read.xls(), a function
1655		to read Microsoft Excel files by
1656		translating them to csv files via the xls2csv.pl script.
1657
1658		2004-05-25 02:46 warnes
1659
1660		* [r326] inst/tools/Makefile: More fixes. Seems to work now.
1661
1662		2004-05-24 23:46 warnes
1663
1664		* [r325] inst/perl, inst/perl/xls2csv.pl, inst/tools,
1665		inst/tools/Makefile, inst/xls, inst/xls/iris.xls: Add files to
1666		enable inclusion and installation of xls2csv.pl as part
1667		of the package.
1668
1669		2004-04-01 20:23 warnes
1670
1671		* [r312] R/rename.vars.R, man/rename.vars.Rd: Add function
1672		remove.vars().
1673
1674		2004-03-26 22:31 warnes
1675
1676		* [r307] man/reorder.Rd: Contents of package 'mva' moveed to
1677		'stats'.
1678
1679		2004-03-26 22:02 warnes
1680
1681		* [r298] R/is.what.R: - Fix is.what() for use under R 1.9.0
1682		- is.what() now uses is.* functions found in any attached frame
1683
1684		2004-01-21 12:06 warnes
1685
1686		* [r282] R/reorder.R, man/reorder.Rd: - Add ... argument to match
1687		generic provided in mva.
1688
1689		2004-01-19 22:45 warnes
1690
1691		* [r275] R/elem.R, R/env.R, R/ll.R, man/keep.Rd, man/ll.Rd: -
1692		Integrated (partial) patch submitted by Arni Magnusson to clarify
1693		help text.
1694		- Modifed code to use match.arg().
1695
1696		2003-12-15 21:07 warnes
1697
1698		* [r271] R/env.R: - Applied patch from Arni that fixed a bug that
1699		caused env() to crash
1700		if any environment was completely empty
1701
1702		2003-12-03 02:46 warnes
1703
1704		* [r253] man/elem.Rd, man/ll.Rd, trunk/gplots/man/lowess.Rd,
1705		trunk/gplots/man/textplot.Rd, trunk/gplots/man/wapply.Rd,
1706		trunk/gtools/man/foldchange.Rd: - match function argument
1707		defaults with 'usage'
1708
1709		2003-12-02 17:00 warnes
1710
1711		* [r249] man/ll.Rd: Add one argument, to match code.
1712
1713		2003-12-01 15:56 warnes
1714
1715		* [r244] R/elem.R, R/env.R, R/is.what.R, R/keep.R, R/ll.R: - Apply
1716		changes submitted by Arni Magnusson
1717
1718		2003-11-19 14:54 warnes
1719
1720		* [r229] man/env.Rd, man/is.what.Rd, man/keep.Rd, man/ll.Rd:
1721		Changes to pass R CMD check.
1722
1723		2003-11-18 18:45 warnes
1724
1725		* [r224] R/elem.R, R/env.R, R/is.what.R, R/keep.R, R/ll.R,
1726		trunk/gplots/R/overplot.R: - Convert from MS-Dos to Unix line
1727		endings.
1728		- Reformat to 80 columns.
1729
1730		2003-11-17 22:09 warnes
1731
1732		* [r223] man/elem.Rd: Replace 'T' with 'TRUE' to remove R CMD check
1733		error.
1734
1735		2003-11-17 22:09 warnes
1736
1737		* [r222] man/aggregate.table.Rd: Fix syntax error.
1738
1739		2003-11-10 22:11 warnes
1740
1741		* [r220] R/elem.R, R/env.R, R/is.what.R, R/keep.R, R/ll.R,
1742		man/elem.Rd, man/env.Rd, man/is.what.Rd, man/keep.Rd, man/ll.Rd,
1743		trunk/gplots/R/heatmap.2.R, trunk/gplots/R/overplot.R,
1744		trunk/gplots/R/plotmeans.R, trunk/gplots/R/space.R,
1745		trunk/gplots/R/wapply.R, trunk/gregmisc/DESCRIPTION,
1746		trunk/gtools/R/capture.R, trunk/gtools/man/capture.Rd: - Add
1747		files contributed by Arni Magnusson
1748		<arnima@u.washington.edu>. As well as some of my own.
1749
1750		2003-06-07 17:58 warnes
1751
1752		* [r198] man/aggregate.table.Rd, man/interleave.Rd: - Fixed error
1753		in examples. Had sqrt(var(x)/(n-1)) for the standard
1754		error of the mean instead of sqrt(var(x)/n).
1755
1756		2003-05-23 18:32 warnes
1757
1758		* [r197] R/matchcols.R, man/matchcols.Rd: - Fixed typos
1759
1760		2003-05-23 18:14 warnes
1761
1762		* [r196] R/matchcols.R, man/matchcols.Rd, trunk/gtools/R/logit.R,
1763		trunk/gtools/man/logit.Rd: - library() backported from 1.7-devel.
1764		This version of the function
1765		adds the "pos=" argument to specify where in the search path the
1766		library should be placed.
1767
1768		- updated .First.lib to use library(...pos=3) for MASS to avoid
1769		the
1770		'genotype' data set in MASS from masking the genotype funciton in
1771		genetics when it loads gregmisc
1772
1773		- Added logit() inv.logit() matchcols() function and
1774		corresponding docs
1775
1776		2003-05-20 16:03 warnes
1777
1778		* [r195] R/interleave.R: - Omit NULL variables.
1779
1780		2003-05-20 13:16 warnes
1781
1782		* [r194] R/trim.R, man/trim.Rd, trunk/gregmisc/DESCRIPTION: - Added
1783		function trim() and assocated docs.
1784
1785		2003-04-22 15:42 warnes
1786
1787		* [r188] R/reorder.R, man/reorder.Rd: - The mva package (which is
1788		part of recommended) now provides a
1789		generic 'reorder' function. Consequently, the 'reorder' function
1790		here has been renamed to 'reorder.factor'.
1791
1792		- Removed check of whether the argument is a factor object.
1793
1794		2003-03-03 17:48 warnes
1795
1796		* [r165] man/reorder.Rd: - Updated to match reorder.Rd which was
1797		exetended to handle factor
1798		label names in addition to numeric indices.
1799
1800		2003-03-03 17:24 warnes
1801
1802		* [r164] R/reorder.R: - Added handling of factor level names in
1803		addition to numeric indexes.
1804
1805		2002-09-23 14:02 warnes
1806
1807		* [r118] inst, inst/doc, inst/doc/Rnews.dtx, inst/doc/Rnews.sty,
1808		inst/doc/gregmisc.pdf, inst/doc/gregmisc.tex: Added inst/doc
1809		directory and contents to CVS.
1810
1811		2002-09-23 13:59 warnes
1812
1813		* [r117] R/aggregate.table.R, R/combine.R, R/interleave.R,
1814		R/nobs.R, man/aggregate.table.Rd, man/combine.Rd,
1815		man/interleave.Rd, man/nobs.Rd, man/rename.vars.Rd,
1816		man/reorder.Rd, trunk/gmodels/R/ci.R,
1817		trunk/gmodels/man/estimable.Rd, trunk/gmodels/man/glh.test.Rd,
1818		trunk/gplots/R/boxplot.n.R, trunk/gplots/R/hist2d.R,
1819		trunk/gplots/R/lowess.R, trunk/gplots/R/residplot.R,
1820		trunk/gplots/man/bandplot.Rd, trunk/gplots/man/hist2d.Rd,
1821		trunk/gplots/man/lowess.Rd, trunk/gplots/man/plotCI.Rd,
1822		trunk/gplots/man/space.Rd, trunk/gtools/man/combinations.Rd,
1823		trunk/gtools/man/quantcut.Rd: - Modified all files to include CVS
1824		Id and Log tags.
1825
1826		2002-08-01 18:06 warnes
1827
1828		* [r112] R/reorder.R: Added reorder() function to reorder the
1829		levels of a factor.
1830
1831		2002-04-09 00:51 warneg
1832
1833		* [r109] R/rename.vars.R, man/aggregate.table.Rd,
1834		man/interleave.Rd, man/reorder.Rd, trunk/gmodels/R/ci.R,
1835		trunk/gmodels/R/estimable.R, trunk/gmodels/R/glh.test.R,
1836		trunk/gmodels/man/glh.test.Rd, trunk/gplots/R/bandplot.R,
1837		trunk/gplots/R/boxplot.n.R, trunk/gplots/R/hist2d.R,
1838		trunk/gplots/R/plot.lm.R, trunk/gplots/R/plotCI.R,
1839		trunk/gplots/R/plotmeans.R, trunk/gplots/R/residplot.R,
1840		trunk/gplots/R/space.R, trunk/gplots/R/wapply.R,
1841		trunk/gplots/man/bandplot.Rd, trunk/gplots/man/boxplot.n.Rd,
1842		trunk/gplots/man/hist2d.Rd, trunk/gplots/man/plotmeans.Rd,
1843		trunk/gplots/man/space.Rd, trunk/gplots/man/wapply.Rd,
1844		trunk/gregmisc/DESCRIPTION, trunk/gtools/R/combinations.R,
1845		trunk/gtools/man/combinations.Rd, trunk/gtools/man/running.Rd:
1846		Checkin for version 0.5.3
1847
1848		2002-04-09 00:46 warneg
1849
1850		* [r108] R/interleave.R: - Properly handle case when some or all
1851		arguments are vectors.
1852
1853		2002-03-26 21:22 warneg
1854
1855		* [r104] man/reorder.Rd, trunk/gmodels/R/ci.R,
1856		trunk/gmodels/R/glh.test.R, trunk/gmodels/man/ci.Rd,
1857		trunk/gmodels/man/glh.test.Rd, trunk/gplots/R/lowess.R,
1858		trunk/gplots/man/lowess.Rd: - Changed methods to include '...' to
1859		match the generic.
1860		- Updated for version 0.5.1
1861
1862		2002-03-26 19:29 warneg
1863
1864		* [r102] R/nobs.R: Added ... to methods.
1865
1866		2002-03-26 19:29 warneg
1867
1868		* [r101] man/nobs.Rd: Updated to add ... parameter to function
1869		calls.
1870
1871		2002-03-26 15:27 warneg
1872
1873		* [r98] man/reorder.Rd: Initial checkin.
1874
1875		2002-03-26 14:28 warneg
1876
1877		* [r95] R/nobs.R: - Added CVS tags
1878
1879		2002-02-21 21:45 warneg
1880
1881		* [r87] R/aggregate.table.R: - Fixed bug where row and column
1882		labels didn't always correspond to the
1883		contents. This only occured when a factor was used for by1 or by2
1884		and
1885		the factors levels weren't in the default sort order.
1886
1887		2002-02-20 22:10 warneg
1888
1889		* [r86] R/aggregate.table.R: New function.
1890
1891		2002-02-20 22:09 warneg
1892
1893		* [r85] man/aggregate.table.Rd: Initial checkin.
1894
1895		2002-02-20 21:42 warneg
1896
1897		* [r84] R/interleave.R, man/interleave.Rd: Initial checkin.
1898
1899		2002-02-20 21:31 warneg
1900
1901		* [r83] man/nobs.Rd: Noted that specialized methods exist.
1902
1903		2002-02-20 21:29 warneg
1904
1905		* [r82] man/nobs.Rd: Incorrectly had contents of nobs.R here
1906		instead of help text. Corrected.
1907
1908		2002-02-20 20:09 warneg
1909
1910		* [r81] man/rename.vars.Rd, trunk/gmodels/man/ci.Rd,
1911		trunk/gmodels/man/estimable.Rd, trunk/gmodels/man/glh.test.Rd,
1912		trunk/gplots/man/lowess.Rd, trunk/gplots/man/plotCI.Rd,
1913		trunk/gplots/man/space.Rd: Minor changes, typo and formatting
1914		fixes.
1915
1916		2002-02-20 20:03 warneg
1917
1918		* [r79] R/nobs.R, man/nobs.Rd: - initial checkin.
1919
1920		2001-12-12 01:39 warneg
1921
1922		* [r53] man/rename.vars.Rd: Added omitted documentaton for 'info'
1923		parameter. Changed example code
1924		not to use 'Orthodont' data set so that the nlme package is not
1925		required.
1926
1927		2001-12-08 01:54 warneg
1928
1929		* [r47] R/rename.vars.R: Changed 'T' to 'TRUE' in parameter list.
1930
1931		2001-12-07 23:33 warneg
1932
1933		* [r45] man/rename.vars.Rd: - Fixed see also link. Mis-typed
1934		'data.frame' as 'dataframe'.
1935
1936		2001-12-07 22:55 warneg
1937
1938		* [r44] R/rename.vars.R: Added attribution.
1939
1940		2001-12-07 22:49 warneg
1941
1942		* [r43] man/rename.vars.Rd: Added proper attribution to Don
1943		MacQueen.
1944
1945		2001-12-07 21:48 warneg
1946
1947		* [r39] man/rename.vars.Rd: Initial checkin. Unfortunately, I've
1948		lost the email of the person who
1949		sent this to me. I'll credit him/her when I find out who it was!
	5429	lost
	5430	the
	5431	email
	5432	of
	5433	the
	5434	person
	5435	who sent
	5436	this
	5437	to
	5438	me.
	5439
	5440	I'll
	5441	credit
	5442	him/her
	5443	when
	5444	I
	5445	find
	5446	out
	5447	who
	5448	it
	5449	was!
1950	5450
1951	5451	2001-12-07 21:40 warneg
1952	5452
1953		* [r38] R/rename.vars.R: Initial checkin
	5453	* [r38]
	5454	R/rename.vars.R:
	5455	Initial
	5456	checkin
1954	5457
1955	5458	2001-12-05 19:51 warneg
1956	5459
1957		* [r34] R, R/combine.R: - Renamed 'concat' function to 'combine' to
1958		avoid name conflict with
1959		an existing S-Plus function.
	5460	* [r34]
	5461	R,
	5462	R/combine.R:
	5463	-
	5464	Renamed
	5465	'concat'
	5466	function
	5467	to
	5468	'combine'
	5469	to
	5470	avoid
	5471	name
	5472	conflict
	5473	with
	5474
	5475	an
	5476	existing
	5477	S-Plus
	5478	function.
1960	5479
1961	5480	2001-12-05 19:44 warneg
1962	5481
1963		* [r32] ., man, man/combine.Rd: - Changed function name 'concat' to
1964		'combine' and renamed concat.Rd to
	5482	* [r32]
	5483	.,
	5484	man,
	5485	man/combine.Rd:
	5486	-
	5487	Changed
	5488	function
	5489	name
	5490	'concat'
	5491	to
	5492	'combine'
	5493	and
	5494	renamed
	5495	concat.Rd
	5496	to
	5497
1965	5498	combine.Rd
1966	5499

+13

-0

inst/NEWS less more

	0	CHANGES IN 2.8.1 (2011-04-15)
	1	-----------------------------
	2
	3	Enhancements:
	4
	5	- nPairs() gains a summary method that shows how many times each variable
	6	is known, while the other variable of a pair is not
	7
	8	Bug fixes:
	9
	10	- Fix errors on windows when R or Perl install path includes spaces by properly quoting the path.
	11
	12
0	13	CHANGES IN 2.8.1 (2010-11-12)
1	14	-----------------------------
2	15

inst/doc/mapLevels.pdf less more

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inst/doc/unknown.pdf less more

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+16

-4

inst/unitTests/runit.nPairs.R less more

25	25	V2=c(NA, 2, 3, 4, 5),
26	26	V3=c(1, NA, NA, NA, NA),
27	27	V4=c(1, 2, 3, NA, NA))
28		testCheck <- matrix(as.integer(c(5, 4, 1, 3,
29		4, 4, 0, 2,
30		1, 0, 1, 1,
31		3, 2, 1, 3)),
	28	testCheck <- matrix(data=as.integer(c(5, 4, 1, 3,
	29	4, 4, 0, 2,
	30	1, 0, 1, 1,
	31	3, 2, 1, 3)),
32	32	nrow=4, ncol=4, byrow=TRUE)
	33	class(testCheck) <- c("nPairs", class(testCheck))
33	34
34	35	testCheckNames <- testCheck
35	36	colnames(testCheckNames) <- rownames(testCheckNames) <- colnames(test)

40	41	checkIdentical(nPairs(x=as.matrix(test), names=FALSE), testCheck)
41	42
42	43	testCheck <- cbind(testCheckNames, as.integer(c(5, 4, 0, 0)))
	44	class(testCheck) <- class(testCheckNames)
43	45	colnames(testCheck) <- c(colnames(test), "all")
44	46	checkIdentical(nPairs(x=test, margin=TRUE), testCheck)
	47
	48	testCheckSumm <- matrix(data=as.integer(c(0, 1, 4, 2,
	49	0, 0, 4, 2,
	50	0, 1, 0, 0,
	51	0, 1, 2, 0)),
	52	nrow=4, ncol=4, byrow=TRUE)
	53	dimnames(testCheckSumm) <- dimnames(testCheckNames)
	54	tmp <- summary(nPairs(x=test))
	55	checkEquals(tmp, testCheckSumm)
45	56	}
	57
46	58
47	59	### }}}
48	60	### {{{ Dear Emacs

-3

man/Args.Rd less more

16	16	containing the default value of each argument.
17	17	}
18	18	\note{
19		In recent versions of \R, primitive functions like \code{sum} and
20		\code{all} have no formal arguments. See the \code{\link{formals}}
21		help page.
	19	Primitive functions like \code{sum} and \code{all} have no formal
	20	arguments. See the \code{\link{formals}} help page.
22	21	}
23	22	\author{Arni Magnusson}
24	23	\seealso{

+10

-0

man/nPairs.Rd less more

28	28	\item{names}{logical, add row/col-names to the output}
29	29	\item{abbrev}{logical, abbreviate names}
30	30	\item{\dots}{other arguments passed to \code{\link{abbreviate}}}
	31	}
	32
	33	\details{
	34
	35	The class of returned matrix is nPairs and matrix. There is a summary method,
	36	which shows the opposite information - counts how many times each variable is
	37	known, while the other variable of a pair is not. See examples.
	38
31	39	}
32	40
33	41	\value{

64	72	## Margin
65	73	nPairs(x=test, margin=TRUE)
66	74
	75	## Summary
	76	summary(object=nPairs(x=test))
67	77	}
68	78
69	79	\keyword{misc}