Commit debian/4.0.0-4 - getfem++

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debian/changelog less more

	0	getfem++ (4.0.0-4) unstable; urgency=low
	1
	2	* Missing dependency on python-numpy
	3	* Standards-Version updated to 3.8.4
	4	* Package moved to Debian Science
	5	* ${misc:Depends} missing for libgetfem++-dev
	6
	7	-- Sylvestre Ledru <sylvestre@debian.org> Fri, 19 Mar 2010 15:21:51 +0100
	8
	9	getfem++ (4.0.0-3) unstable; urgency=low
	10
	11	* Fix broken superlu interface in libgmm++-dev (Closes: #552709)
	12
	13	-- Konstantinos Poulios <poulios.konstantinos@gmail.com> Tue, 22 Dec 2009 14:41:24 +0100
	14
	15	getfem++ (4.0.0-2) unstable; urgency=low
	16
	17	* Rebuild with python-support (>= 1.0.4). See #549283.
	18	* debian/control (Build-Depends): add version restriction (>= 1.0.4)
	19	to python-support
	20
	21	-- Konstantinos Poulios <poulios.konstantinos@gmail.com> Fri, 09 Oct 2009 12:51:52 +0200
	22
	23	getfem++ (4.0.0-1) unstable; urgency=low
	24
	25	* Initial release (Closes: #453065)
	26
	27	-- Konstantinos Poulios <poulios.konstantinos@gmail.com> Tue, 29 Sep 2009 13:34:52 +0200

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debian/compat less more

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7

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debian/control less more

	0	Source: getfem++
	1	Priority: extra
	2	Maintainer: Debian Science Team <debian-science-maintainers@lists.alioth.debian.org>
	3	Uploaders: Konstantinos Poulios <poulios.konstantinos@gmail.com>
	4	Build-Depends: debhelper (>= 7),
	5	autotools-dev, libtool, automake, autoconf, quilt (>= 0.46-4),
	6	libblas-dev, libboost-dev, libqhull-dev, libsuperlu3-dev,
	7	python-numpy, python-all-dev, python-support (>= 1.0.4)
	8	XS-Python-Version: all
	9	Standards-Version: 3.8.4
	10	Section: libs
	11	Homepage: http://home.gna.org/getfem/
	12	Vcs-Svn: svn://svn.debian.org/svn/debian-science/packages/getfem++/
	13	Vcs-Browser: http://svn.debian.org/wsvn/debian-science/packages/getfem++/
	14
	15	Package: libgetfem4++
	16	Section: libs
	17	Architecture: any
	18	Depends: ${shlibs:Depends}, ${misc:Depends}
	19	Description: GETFEM++ generic finite element library
	20	GETFEM++ is a library allowing the computation of any elementary matrix (even
	21	for mixed finite element methods) on the largest class of methods and elements,
	22	and for arbitrary dimension.
	23
	24
	25	Package: libgetfem++-dbg
	26	Section: debug
	27	Architecture: any
	28	Depends: ${shlibs:Depends}, ${misc:Depends}, libgetfem4++ (= ${binary:Version})
	29	Description: Debugging symbols for the GETFEM++ generic finite element library
	30	GETFEM++ is a library allowing the computation of any elementary matrix (even
	31	for mixed finite element methods) on the largest class of methods and elements,
	32	and for arbitrary dimension.
	33	.
	34	This package contains debugging files used to investigate problems with
	35	binaries included in the GETFEM++ packages.
	36
	37
	38	Package: libgetfem++-dev
	39	Section: libdevel
	40	Architecture: any
	41	Depends: ${misc:Depends}, libgetfem4++ (= ${binary:Version}), libboost-dev
	42	Description: Development files for the GETFEM++ generic finite element library
	43	GETFEM++ is a library allowing the computation of any elementary matrix (even
	44	for mixed finite element methods) on the largest class of methods and elements,
	45	and for arbitrary dimension.
	46	.
	47	This package contains development files for building software that uses the
	48	GETFEM++ library.
	49
	50
	51	Package: libgmm++-dev
	52	Section: libdevel
	53	Architecture: all
	54	Depends: ${shlibs:Depends}, ${misc:Depends}
	55	Description: Generic C++ template library for sparse, dense and skyline matrices
	56	GMM++ is a framework of pre-defined methods for matrix computation. It is built
	57	as a set of generic algorithms for any interfaced vector type or matrix type.
	58	.
	59	It can be viewed as a glue library allowing cooperation between several vector
	60	and matrix types. However, basic sparse, dense and skyline matrix/vector types
	61	are built-in, hence it can be used as a standalone linear algebra library.
	62
	63
	64	Package: python-getfem++
	65	Section: python
	66	Architecture: any
	67	Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends},
	68	libgetfem4++ (= ${binary:Version}), python-numpy
	69	XB-Python-Version: ${python:Versions}
	70	Provides: ${python:Provides}
	71	Description: Python interface to the GETFEM++ generic finite element library
	72	GETFEM++ is a library allowing the computation of any elementary matrix (even
	73	for mixed finite element methods) on the largest class of methods and elements,
	74	and for arbitrary dimension.
	75	.
	76	This package contains the Python interface to GETFEM++.

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debian/copyright less more

	0	Format-Specification: http://svn.debian.org/wsvn/dep/web/deps/dep5.mdwn?op=file&rev=REVISION
	1	Name: GETFEM++
	2	Maintainer: Yves Renard <Yves.Renard@insa-lyon.fr>
	3	Julien Pommier <Julien.Pommier@insa-toulouse.fr>
	4
	5	Source: http://home.gna.org/getfem/
	6
	7	Copyright: 1995-2009, Yves Renard <Yves.Renard@insa-lyon.fr>
	8	2000-2009, Julien Pommier <Julien.Pommier@insa-toulouse.fr>
	9	2001-2009, Jeremie Lasry
	10	2002-2009, Vanessa Lleras
	11	2002-2008, Michel Salaün
	12	2002-2008, Houari Khenous
	13	2002-2008, Jean-Yves Heddebaut
	14	Thorsten Ottosen
	15	License: LGPL-2.1+
	16	On Debian systems the full text of the GNU Lesser General Public
	17	License can be found in the `/usr/share/common-licenses/LGPL'
	18	file.
	19
	20	Files: internal_tools/simplexification_refelt.cc
	21	Copyright: 2002-2009, Yves Renard <Yves.Renard@insa-lyon.fr>
	22	2002-2009, Julien Pommier <Julien.Pommier@insa-toulouse.fr>
	23	License: LGPL-2.1
	24	On Debian systems the full text of the GNU Lesser General Public
	25	License can be found in the `/usr/share/common-licenses/LGPL-2.1'
	26	file.
	27
	28	Files: contrib/icare/icare.cc
	29	Copyright: 2002-2009, Michel Fournié
	30	2002-2009, Nicolas Renon
	31	2002-2009, Nicolas Roux
	32	License: LGPL-2.1
	33	On Debian systems the full text of the GNU Lesser General Public
	34	License can be found in the `/usr/share/common-licenses/LGPL-2.1'
	35	file.
	36
	37	Files: src/gmm/gmm_dense_lu.h
	38	src/gmm/gmm_precond_ildlt.h
	39	src/gmm/gmm_precond_ilu.h
	40	src/gmm/gmm_precond_mr_approx_inverse.h
	41	src/gmm/gmm_solver_bicgstab.h
	42	src/gmm/gmm_solver_cg.h
	43	src/gmm/gmm_solver_gmres.h
	44	src/gmm/gmm_solver_qmr.h
	45	Copyright: 1997-2001, The Trustees of Indiana University
	46	1997-2008, Yves Renard
	47	License: BSD and LGPL-2.1+
	48	On Debian systems the full text of the Berkeley software distribution
	49	License can be found in the `/usr/share/common-licenses/BSD' file.
	50	On Debian systems the full text of the GNU Lesser General Public
	51	License can be found in the `/usr/share/common-licenses/LGPL-2.1'
	52	file.
	53
	54	Files: superlu/*
	55	Copyright: 1987-1990, John Gilbert
	56	1992-1994, Univ. of Tennessee
	57	1992-1994, NAG Ltd.
	58	1992-1994, Courant Institute
	59	1992-1994, Argonne National Lab
	60	1992-1994, Rice University
	61	1994, Xerox Corporation
	62	1992-2003, Univ. of California Berkeley
	63	1997-2003, Xerox Palo Alto Research Center
	64	1997-2003, Lawrence Berkeley National Lab
	65	1998-2003, University of Florida
	66	License: BSD and BSD/superlu and Xerox
	67	On Debian systems the full text of the Berkeley software distribution
	68	License can be found in the `/usr/share/common-licenses/BSD' file.
	69
	70	Files: src/getfem_boost/*
	71	Copyright: 1999-2003, Beman Dawes
	72	2001-2002, Peter Dimov
	73	2002, David Abrahams
	74	License: Boost-1.0
	75
	76	Files: debian/*
	77	Copyright: 2009, Konstantinos Poulios
	78	License: GPL
	79	On Debian systems the full text of the GNU General Public
	80	License can be found in the `/usr/share/common-licenses/GPL'
	81	file.
	82
	83
	84	License: BSD/superlu
	85	The Regents of the University of California, through Lawrence Berkeley National
	86	Laboratory (subject to receipt of any required approvals from U.S. Dept. of
	87	Energy)
	88
	89	All rights reserved.
	90
	91	Redistribution and use in source and binary forms, with or without modification,
	92	are permitted provided that the following conditions are met:
	93
	94	(1) Redistributions of source code must retain the above copyright notice,
	95	this list of conditions and the following disclaimer.
	96	(2) Redistributions in binary form must reproduce the above copyright notice,
	97	this list of conditions and the following disclaimer in the documentation
	98	and/or other materials provided with the distribution.
	99	(3) Neither the name of Lawrence Berkeley National Laboratory, U.S. Dept. of
	100	Energy nor the names of its contributors may be used to endorse or promote
	101	products derived from this software without specific prior written permission.
	102
	103	THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS
	104	IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
	105	IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
	106	PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
	107	CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
	108	EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
	109	PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
	110	PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
	111	LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
	112	NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
	113	SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
	114
	115
	116	License: Xerox
	117	Xerox Corporation. All rights reserved.
	118
	119	THIS MATERIAL IS PROVIDED AS IS, WITH ABSOLUTELY NO WARRANTY
	120	EXPRESSED OR IMPLIED. ANY USE IS AT YOUR OWN RISK.
	121
	122	Permission is hereby granted to use or copy this program for any
	123	purpose, provided the above notices are retained on all copies.
	124	Permission to modify the code and to distribute modified code is
	125	granted, provided the above notices are retained, and a notice that
	126	the code was modified is included with the above copyright notice.
	127
	128
	129	License: Boost-1.0
	130	Boost Software License - Version 1.0 - August 17th, 2003
	131
	132	Permission is hereby granted, free of charge, to any person or organization
	133	obtaining a copy of the software and accompanying documentation covered by
	134	this license (the "Software") to use, reproduce, display, distribute,
	135	execute, and transmit the Software, and to prepare derivative works of the
	136	Software, and to permit third-parties to whom the Software is furnished to
	137	do so, all subject to the following:
	138
	139	The copyright notices in the Software and this entire statement, including
	140	the above license grant, this restriction and the following disclaimer,
	141	must be included in all copies of the Software, in whole or in part, and
	142	all derivative works of the Software, unless such copies or derivative
	143	works are solely in the form of machine-executable object code generated by
	144	a source language processor.
	145
	146	THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
	147	IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
	148	FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT
	149	SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE
	150	FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,
	151	ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
	152	DEALINGS IN THE SOFTWARE.
	153

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debian/docs less more

	0	BUGS
	1	NEWS
	2	README

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debian/libgetfem++-dev.install less more

	0	usr/bin/getfem-config
	1	usr/include/getfem
	2	usr/include/getfem_boost
	3	usr/lib/libgetfem.so
	4	usr/lib/libgetfem.a
	5	usr/lib/libgetfem.la

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debian/libgetfem4++.install less more

0

usr/lib/libgetfem.so.4*

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debian/libgmm++-dev.install less more

0

usr/include/gmm/

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debian/patches/gmm_superlu_interface.patch less more

	0	--- getfem-4.0.0/src/gmm/gmm_superlu_interface.h.orig 2009-02-21 17:29:49.000000000 +0100
	1	+++ getfem-4.0.0/src/gmm/gmm_superlu_interface.h 2009-12-08 09:53:44.816055000 +0100
	2	@@ -195,8 +195,8 @@ namespace gmm {
	3	StatInit(&stat);
	4
	5	SuperMatrix SA, SL, SU, SB, SX; // SuperLU format.
	6	- Create_CompCol_Matrix(&SA, m, n, nz, csc_A.pr,
	7	- (int )(csc_A.ir), (int )(csc_A.jc));
	8	+ Create_CompCol_Matrix(&SA, m, n, nz, (double *)(&(csc_A.pr[0])),
	9	+ (int )(&(csc_A.ir[0])), (int )(&(csc_A.jc[0])));
	10	Create_Dense_Matrix(&SB, m, nrhs, &rhs[0], m);
	11	Create_Dense_Matrix(&SX, m, nrhs, &sol[0], m);
	12	memset(&SL,0,sizeof SL);
	13	@@ -314,9 +314,10 @@ namespace gmm {
	14	case 3 : options.ColPerm = COLAMD; break;
	15	}
	16	StatInit(&stat);
	17	-
	18	- Create_CompCol_Matrix(&SA, m, n, nz, csc_A.pr,
	19	- (int )(csc_A.ir), (int )(csc_A.jc));
	20	+
	21	+ Create_CompCol_Matrix(&SA, m, n, nz, (double *)(&(csc_A.pr[0])),
	22	+ (int )(&(csc_A.ir[0])), (int )(&(csc_A.jc[0])));
	23	+
	24	Create_Dense_Matrix(&SB, m, 0, &rhs[0], m);
	25	Create_Dense_Matrix(&SX, m, 0, &sol[0], m);
	26	memset(&SL,0,sizeof SL);

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0

gmm_superlu_interface.patch

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debian/python-getfem++.install less more

	0	usr/lib/python/-packages/getfem/*.so
	1	usr/lib/python/-packages/getfem/*.py

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debian/pyversions less more

0

2.5-

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debian/rules less more

	0	#!/usr/bin/make -f
	1	# -- makefile --
	2	# Sample debian/rules that uses debhelper.
	3	# This file was originally written by Joey Hess and Craig Small.
	4	# As a special exception, when this file is copied by dh-make into a
	5	# dh-make output file, you may use that output file without restriction.
	6	# This special exception was added by Craig Small in version 0.37 of dh-make.
	7
	8	# Uncomment this to turn on verbose mode.
	9	#export DH_VERBOSE=1
	10
	11
	12	# These are used for cross-compiling and for saving the configure script
	13	# from having to guess our platform (since we know it already)
	14	DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
	15	DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
	16	ifneq ($(DEB_HOST_GNU_TYPE),$(DEB_BUILD_GNU_TYPE))
	17	CROSS= --build $(DEB_BUILD_GNU_TYPE) --host $(DEB_HOST_GNU_TYPE)
	18	else
	19	CROSS= --build $(DEB_BUILD_GNU_TYPE)
	20	endif
	21
	22
	23	PYVERS=$(shell pyversions -vr)
	24
	25	configure_flags= $(CROSS) --prefix=/usr \
	26	--enable-boost --enable-shared --with-pic \
	27	--enable-python --disable-matlab --disable-superlu \
	28	CFLAGS="$(CFLAGS)"
	29
	30
	31	# shared library versions, option 1
	32	version=4.0.0
	33	major=4
	34	# option 2, assuming the library is created as src/.libs/libfoo.so.2.0.5 or so
	35	#version=`ls src/.libs/lib.so. \| \
	36	# awk '{if (match($$0,/[0-9]+\.[0-9]+\.[0-9]+$$/)) print substr($$0,RSTART)}'`
	37	#major=`ls src/.libs/lib.so. \| \
	38	# awk '{if (match($$0,/\.so\.[0-9]+$$/)) print substr($$0,RSTART+4)}'`
	39
	40	configure: configure-stamp
	41	configure-stamp:
	42	dh_testdir
	43	QUILT_PATCHES=debian/patches quilt push -a \|\| test $$? = 2
	44	# Add here commands to configure the package.
	45	aclocal -I ./m4
	46	libtoolize -f
	47	autoheader
	48	autoreconf
	49	autoconf
	50	automake -a --gnu `find . -name Makefile.am \| sed -e 's@\./$.*$\.am@\1@g'`
	51	./configure $(configure_flags)
	52
	53	touch configure-stamp
	54
	55
	56	build: build-stamp
	57	build-stamp: configure-stamp
	58	dh_testdir
	59
	60	# Add here commands to compile the package.
	61	$(MAKE)
	62
	63	touch $@
	64
	65	clean:
	66	dh_testdir
	67	dh_testroot
	68	rm -f build-stamp configure-stamp
	69	QUILT_PATCHES=debian/patches quilt pop -a -R \|\| test $$? = 2
	70
	71	# Add here commands to clean up after the build process.
	72	[ ! -f Makefile ] \|\| $(MAKE) clean
	73
	74	dh_clean
	75
	76	install: build
	77	dh_testdir
	78	dh_testroot
	79	dh_prep
	80	dh_installdirs
	81
	82	# Add here commands to install the package into debian/tmp
	83	$(MAKE) DESTDIR=$(CURDIR)/debian/tmp install
	84
	85
	86	# Build architecture-independent files here.
	87	binary-indep: install
	88	dh_testdir
	89	dh_testroot
	90	dh_installchangelogs -i ChangeLog
	91	dh_installdocs -i
	92	dh_installexamples -i #not really needed
	93	dh_install -i --list-missing --sourcedir=debian/tmp
	94	# dh_installman -i
	95	dh_compress -i
	96	dh_fixperms -i
	97	dh_installdeb -i
	98	dh_gencontrol -i
	99	dh_md5sums -i
	100	dh_builddeb -i
	101
	102	# Build architecture-dependent files here.
	103	binary-arch: install
	104	dh_testdir
	105	dh_testroot
	106	dh_installchangelogs -a ChangeLog
	107	dh_installdocs -a
	108	dh_installexamples -a #not really needed
	109	dh_install -a --list-missing --sourcedir=debian/tmp
	110	# dh_installman -a
	111	dh_link -a
	112	dh_strip -a --dbg-package=libgetfem++-dbg
	113	dh_compress -a
	114	dh_fixperms -a
	115	dh_pysupport --package=python-getfem++
	116	dh_makeshlibs -a
	117	dh_installdeb -a
	118	dh_shlibdeps -a
	119	dh_gencontrol -a
	120	dh_md5sums -a
	121	dh_builddeb -a
	122
	123	binary: binary-indep binary-arch
	124
	125	.PHONY: build clean binary-indep binary-arch binary install configure

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debian/watch less more

	0	version=3
	1	http://download.gna.org/getfem/stable/getfem-([\d.]+)\.tar\.gz