Commit d16740f369bcbaa403a1d89c543b3208a09383d5 - mash

Merge tag 'upstream/2.2.2+dfsg' Upstream version 2.2.2+dfsg Sascha Steinbiss 4 years ago

2 changed file(s) with 5 addition(s) and 3 deletion(s). Raw diff Collapse all Expand all

-2

src/mash/Sketch.cpp less more

533	533	reverseComplement(seq, seqRev, length);
534	534	}
535	535
	536	uint64_t j = 0;
	537
536	538	for ( uint64_t i = 0; i < length - kmerSize + 1; i++ )
537	539	{
538	540	// repeatedly skip kmers with bad characters
539	541	//
540	542	bool bad = false;
541	543	//
542		for ( uint64_t j = i; j < i + kmerSize && i + kmerSize <= length; j++ )
	544	for ( ; j < i + kmerSize && i + kmerSize <= length; j++ )
543	545	{
544	546	if ( ! parameters.alphabet[seq[j]] )
545	547	{
546		i = j; // skip to past the bad character
	548	i = j++; // skip to past the bad character
547	549	bad = true;
548	550	break;
549	551	}

-1

src/mash/version.h less more

3	3	//
4	4	// See the LICENSE.txt file included with this software for license information.
5	5
6		static const char * version = "2.2";
	6	static const char * version = "2.2.2";