Codebase list ngs-sdk / b537164
Refresh patches. Debian Janitor 2 years ago
5 changed file(s) with 64 addition(s) and 32 deletion(s). Raw diff Collapse all Expand all
+16
-8
debian/patches/do_not_exclude_certain_architectures_explicitly.patch less more
33 Author: Andreas Tille <tille@debian.org>
44 Last-Update: Wed, 03 Feb 2016 07:53:29 +0100
55
6 --- a/ngs-bam/setup/konfigure.perl
7 +++ b/ngs-bam/setup/konfigure.perl
6 Index: ngs-sdk/ngs-bam/setup/konfigure.perl
7 ===================================================================
8 --- ngs-sdk.orig/ngs-bam/setup/konfigure.perl
9 +++ ngs-sdk/ngs-bam/setup/konfigure.perl
810 @@ -226,8 +226,7 @@ if ($OS eq 'linux') {
911 print "checking machine architecture... " unless ($AUTORUN);
1012 println $MARCH unless ($AUTORUN);
1517 }
1618
1719 {
18 --- a/ngs-java/setup/konfigure.perl
19 +++ b/ngs-java/setup/konfigure.perl
20 Index: ngs-sdk/ngs-java/setup/konfigure.perl
21 ===================================================================
22 --- ngs-sdk.orig/ngs-java/setup/konfigure.perl
23 +++ ngs-sdk/ngs-java/setup/konfigure.perl
2024 @@ -226,8 +226,7 @@ if ($OS eq 'linux') {
2125 print "checking machine architecture... " unless ($AUTORUN);
2226 println $MARCH unless ($AUTORUN);
2731 }
2832
2933 {
30 --- a/ngs-python/setup/konfigure.perl
31 +++ b/ngs-python/setup/konfigure.perl
34 Index: ngs-sdk/ngs-python/setup/konfigure.perl
35 ===================================================================
36 --- ngs-sdk.orig/ngs-python/setup/konfigure.perl
37 +++ ngs-sdk/ngs-python/setup/konfigure.perl
3238 @@ -226,8 +226,7 @@ if ($OS eq 'linux') {
3339 print "checking machine architecture... " unless ($AUTORUN);
3440 println $MARCH unless ($AUTORUN);
3945 }
4046
4147 {
42 --- a/ngs-sdk/setup/konfigure.perl
43 +++ b/ngs-sdk/setup/konfigure.perl
48 Index: ngs-sdk/ngs-sdk/setup/konfigure.perl
49 ===================================================================
50 --- ngs-sdk.orig/ngs-sdk/setup/konfigure.perl
51 +++ ngs-sdk/ngs-sdk/setup/konfigure.perl
4452 @@ -226,8 +226,7 @@ if ($OS eq 'linux') {
4553 print "checking machine architecture... " unless ($AUTORUN);
4654 println $MARCH unless ($AUTORUN);
+16
-8
debian/patches/enable-ppc64el.patch less more
00 Description: Enable ppc64 and ppc64el
11 Handle those architectures in the configuration scripts.
22 Author: Frédéric Bonnard <frediz@debian.org>
3 --- a/ngs-bam/setup/os-arch.prl
4 +++ b/ngs-bam/setup/os-arch.prl
3 Index: ngs-sdk/ngs-bam/setup/os-arch.prl
4 ===================================================================
5 --- ngs-sdk.orig/ngs-bam/setup/os-arch.prl
6 +++ ngs-sdk/ngs-bam/setup/os-arch.prl
57 @@ -55,6 +55,9 @@ sub OsArch {
68 } elsif ($MARCH =~ /sun4v/) {
79 $HOST_ARCH = 'sparc64';
1214 } elsif ($MARCH =~ /aarch64/) {
1315 $HOST_ARCH = 'arm64';
1416 } else {
15 --- a/ngs-java/setup/os-arch.prl
16 +++ b/ngs-java/setup/os-arch.prl
17 Index: ngs-sdk/ngs-java/setup/os-arch.prl
18 ===================================================================
19 --- ngs-sdk.orig/ngs-java/setup/os-arch.prl
20 +++ ngs-sdk/ngs-java/setup/os-arch.prl
1721 @@ -55,6 +55,9 @@ sub OsArch {
1822 } elsif ($MARCH =~ /sun4v/) {
1923 $HOST_ARCH = 'sparc64';
2428 } elsif ($MARCH =~ /aarch64/) {
2529 $HOST_ARCH = 'arm64';
2630 } else {
27 --- a/ngs-python/setup/os-arch.prl
28 +++ b/ngs-python/setup/os-arch.prl
31 Index: ngs-sdk/ngs-python/setup/os-arch.prl
32 ===================================================================
33 --- ngs-sdk.orig/ngs-python/setup/os-arch.prl
34 +++ ngs-sdk/ngs-python/setup/os-arch.prl
2935 @@ -55,6 +55,9 @@ sub OsArch {
3036 } elsif ($MARCH =~ /sun4v/) {
3137 $HOST_ARCH = 'sparc64';
3642 } elsif ($MARCH =~ /aarch64/) {
3743 $HOST_ARCH = 'arm64';
3844 } else {
39 --- a/ngs-sdk/setup/os-arch.prl
40 +++ b/ngs-sdk/setup/os-arch.prl
45 Index: ngs-sdk/ngs-sdk/setup/os-arch.prl
46 ===================================================================
47 --- ngs-sdk.orig/ngs-sdk/setup/os-arch.prl
48 +++ ngs-sdk/ngs-sdk/setup/os-arch.prl
4149 @@ -55,6 +55,9 @@ sub OsArch {
4250 } elsif ($MARCH =~ /sun4v/) {
4351 $HOST_ARCH = 'sparc64';
+4
-2
debian/patches/fallback-on-generic-atomic32.patch less more
00 Description: Fallback on generic atomic32.h
11 Author: Frédéric Bonnard <frediz@debian.org>
22 Bug-Debian: https://bugs.debian.org/813559
3 --- a/ngs-sdk/setup/konfigure.perl
4 +++ b/ngs-sdk/setup/konfigure.perl
3 Index: ngs-sdk/ngs-sdk/setup/konfigure.perl
4 ===================================================================
5 --- ngs-sdk.orig/ngs-sdk/setup/konfigure.perl
6 +++ ngs-sdk/ngs-sdk/setup/konfigure.perl
57 @@ -957,8 +957,13 @@ EndText
68 }
79 if ($PIC) {
+12
-6
debian/patches/fix_jni.patch less more
22 Author: Olivier Sallou <osallou@debian.org>
33 Last-Updated: 02/01/2016
44 Forwarded: no
5 --- a/ngs-sdk/language/java/jni.h
6 +++ b/ngs-sdk/language/java/jni.h
5 Index: ngs-sdk/ngs-sdk/language/java/jni.h
6 ===================================================================
7 --- ngs-sdk.orig/ngs-sdk/language/java/jni.h
8 +++ ngs-sdk/ngs-sdk/language/java/jni.h
79 @@ -24,7 +24,7 @@
810 /* jni_md.h contains the machine-dependent typedefs for jbyte, jint
911 and jlong */
1315
1416 #ifdef __cplusplus
1517 extern "C" {
16 --- a/ngs-sdk/language/java/jni_ErrorMsg.hpp
17 +++ b/ngs-sdk/language/java/jni_ErrorMsg.hpp
18 Index: ngs-sdk/ngs-sdk/language/java/jni_ErrorMsg.hpp
19 ===================================================================
20 --- ngs-sdk.orig/ngs-sdk/language/java/jni_ErrorMsg.hpp
21 +++ ngs-sdk/ngs-sdk/language/java/jni_ErrorMsg.hpp
1822 @@ -31,7 +31,7 @@
1923 #include <ngs/itf/ErrBlock.h>
2024 #endif
2428
2529
2630 /*--------------------------------------------------------------------------
27 --- a/ngs-sdk/language/java/jni_String.hpp
28 +++ b/ngs-sdk/language/java/jni_String.hpp
31 Index: ngs-sdk/ngs-sdk/language/java/jni_String.hpp
32 ===================================================================
33 --- ngs-sdk.orig/ngs-sdk/language/java/jni_String.hpp
34 +++ ngs-sdk/ngs-sdk/language/java/jni_String.hpp
2935 @@ -31,7 +31,7 @@
3036 #include <ngs/itf/defs.h>
3137 #endif
+16
-8
debian/patches/more_archs less more
00 From: Michael R. Crusoe <michael.crusoe@gmail.com>
11 Subject: Enable building on more architectures
2 --- a/ngs-java/setup/konfigure.perl
3 +++ b/ngs-java/setup/konfigure.perl
2 Index: ngs-sdk/ngs-java/setup/konfigure.perl
3 ===================================================================
4 --- ngs-sdk.orig/ngs-java/setup/konfigure.perl
5 +++ ngs-sdk/ngs-java/setup/konfigure.perl
46 @@ -309,17 +309,7 @@ print "checking for supported architectu
57
68 my $BITS;
2022 println "$MARCH ($BITS bits) is supported" unless ($AUTORUN);
2123
2224 # determine OS and related norms
23 --- a/ngs-bam/setup/konfigure.perl
24 +++ b/ngs-bam/setup/konfigure.perl
25 Index: ngs-sdk/ngs-bam/setup/konfigure.perl
26 ===================================================================
27 --- ngs-sdk.orig/ngs-bam/setup/konfigure.perl
28 +++ ngs-sdk/ngs-bam/setup/konfigure.perl
2529 @@ -309,17 +309,7 @@ print "checking for supported architectu
2630
2731 my $BITS;
4145 println "$MARCH ($BITS bits) is supported" unless ($AUTORUN);
4246
4347 # determine OS and related norms
44 --- a/ngs-python/setup/konfigure.perl
45 +++ b/ngs-python/setup/konfigure.perl
48 Index: ngs-sdk/ngs-python/setup/konfigure.perl
49 ===================================================================
50 --- ngs-sdk.orig/ngs-python/setup/konfigure.perl
51 +++ ngs-sdk/ngs-python/setup/konfigure.perl
4652 @@ -309,17 +309,7 @@ print "checking for supported architectu
4753
4854 my $BITS;
6268 println "$MARCH ($BITS bits) is supported" unless ($AUTORUN);
6369
6470 # determine OS and related norms
65 --- a/ngs-sdk/setup/konfigure.perl
66 +++ b/ngs-sdk/setup/konfigure.perl
71 Index: ngs-sdk/ngs-sdk/setup/konfigure.perl
72 ===================================================================
73 --- ngs-sdk.orig/ngs-sdk/setup/konfigure.perl
74 +++ ngs-sdk/ngs-sdk/setup/konfigure.perl
6775 @@ -309,17 +309,7 @@ print "checking for supported architectu
6876
6977 my $BITS;