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lintian-fixes/main

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function valnew=surfdiffuse(node,tri,val,ddt,iter,type1,opt)
%
% valnew=surfdiffuse(node,tri,val,ddt,iter,type1,opt)
%
% apply a smoothing/diffusion process on a surface
%
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
%     node: list of nodes of the surface mesh
%     tri: triangular element list of the surface
%     val: vector, scalar value for each node
%     ddt: diffusion coefficient multiplied by delta t
%     iter: iterations for applying the smoothing
%     type1: indices of the nodes which will not be updated
%     opt: method, 'grad' for gradient based, and 'simple' for simple average
%
% output:
%     valnew: nodal value vector after the smoothing
%
% -- this function is part of iso2mesh toolbox (http://iso2mesh.sf.net)
%

if(iscell(tri))
	conn=tri;
else
	conn=meshconn(tri,size(node,1));
end
valnew=val;
nn=size(node,1);

nontype1=1:nn;
nontype1(type1)=[];
ninner=length(nontype1);
updateflag=zeros(ninner,1);

if(strcmp(opt,'grad'))
    for i=1:iter
       for j=1:ninner
           jj=nontype1(j);
           neighbors=conn{jj};
           dist=node(neighbors,:);
           dist(:,1)=dist(:,1)-node(jj,1);
           dist(:,2)=dist(:,2)-node(jj,2);
           dist(:,3)=dist(:,3)-node(jj,3);
           c0=sqrt(sum((dist.*dist)'));
           neighbors(find(c0==0))=[];
           valnew(jj)=val(jj)+ddt*sum((val(neighbors)'-val(jj))./c0);
       end
       val=valnew;
    end
elseif(strcmp(opt,'simple'))
    for i=1:iter
       for j=1:ninner
           jj=nontype1(j);
           if(~isempty(conn{jj}))
               valnew(jj)=(1-ddt)*val(jj)+ddt*mean((val(conn{jj})'));
           end
       end
       val=valnew;
    end
end