Package list python-pauvre / d43825de-9c74-49c7-99c3-e664b2fc4499/upstream scripts / test.sh
d43825de-9c74-49c7-99c3-e664b2fc4499/upstream

Tree @d43825de-9c74-49c7-99c3-e664b2fc4499/upstream (Download .tar.gz)

test.sh @d43825de-9c74-49c7-99c3-e664b2fc4499/upstream

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set -ev

git clone https://github.com/wdecoster/nanotest.git

pauvre -h

pauvre marginplot -h
pauvre marginplot -f nanotest/reads.fastq.gz
pauvre marginplot -f nanotest/reads.fastq.gz -t "my title" --filt_maxlen 30000
pauvre marginplot -f nanotest/reads.fastq.gz -y --filt_minqual 7 --fileform svg

pauvre stats -h
pauvre stats -f nanotest/reads.fastq.gz
pauvre stats -f nanotest/reads.fastq.gz -H --filt_maxqual 12