Codebase list python-pauvre / 75b1692a-c8cb-49b7-b390-5723a15cfe30/upstream/0.1923+git20210503.2.a87f2c1 scripts / test.sh
75b1692a-c8cb-49b7-b390-5723a15cfe30/upstream/0.1923+git20210503.2.a87f2c1

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test.sh @75b1692a-c8cb-49b7-b390-5723a15cfe30/upstream/0.1923+git20210503.2.a87f2c1raw · history · blame

set -ev

git clone https://github.com/wdecoster/nanotest.git

pauvre -h

pauvre marginplot -h
pauvre marginplot -f nanotest/reads.fastq.gz
pauvre marginplot -f nanotest/reads.fastq.gz -t "my title" --filt_maxlen 30000
pauvre marginplot -f nanotest/reads.fastq.gz -y --filt_minqual 7 --fileform svg

pauvre stats -h
pauvre stats -f nanotest/reads.fastq.gz
pauvre stats -f nanotest/reads.fastq.gz -H --filt_maxqual 12