.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.14.
.TH PAUVRE "1" "April 2020" "pauvre 0.1924" "User Commands"
.SH NAME
pauvre \- QC and genome browser plotting Oxford Nanopore and PacBio long reads
.SH DESCRIPTION
usage: pauvre [\-h] [\-v]
.IP
{browser,custommargin,marginplot,redwood,stats,synplot} ...
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-v\fR, \fB\-\-version\fR
Installed pauvre version
.SS "[sub-commands]:"
.IP
{browser,custommargin,marginplot,redwood,stats,synplot}
.TP
browser
an adaptable genome browser with various track types
.TP
custommargin
plot custom marginal histograms of tab\-delimited files
.TP
marginplot
plot a marginal histogram of a fastq file
.TP
redwood
make a redwood plot from a bam file
.TP
stats
outputs stats from a fastq file
.TP
synplot
make a synteny plot from a gff file, protein
alignment, and partition file
.SH "SEE ALSO"
The full documentation for
.B pauvre
is maintained as a Texinfo manual.  If the
.B info
and
.B pauvre
programs are properly installed at your site, the command
.IP
.B info pauvre
.PP
should give you access to the complete manual.