Package list python-pauvre / d096ed00-68d6-4f24-87d7-8ce178980d62/upstream scripts / test.sh
d096ed00-68d6-4f24-87d7-8ce178980d62/upstream

Tree @d096ed00-68d6-4f24-87d7-8ce178980d62/upstream (Download .tar.gz)

test.sh @d096ed00-68d6-4f24-87d7-8ce178980d62/upstreamraw · history · blame

set -ev

git clone https://github.com/wdecoster/nanotest.git

pauvre -h

pauvre marginplot -h
pauvre marginplot -f nanotest/reads.fastq.gz
pauvre marginplot -f nanotest/reads.fastq.gz -t "my title" --filt_maxlen 30000
pauvre marginplot -f nanotest/reads.fastq.gz -y --filt_minqual 7 --fileform svg

pauvre stats -h
pauvre stats -f nanotest/reads.fastq.gz
pauvre stats -f nanotest/reads.fastq.gz -H --filt_maxqual 12