Package list python-pauvre / 99a99a4
upstream patch fix kwargs Etienne Mollier 1 year, 4 months ago
2 changed file(s) with 39 addition(s) and 0 deletion(s). Raw diff Collapse all Expand all
0 Description: fixed a small error with kwargs
1 cherry picked from upstream, fixes a crash when running the provided test
2 suite:
3 plotting in the following window:
4 0 <= Q-score (x-axis) <= 14.0
5 0 <= length (y-axis) <= 223383
6 .
7 Traceback (most recent call last):
8 File "/usr/bin/pauvre", line 11, in <module>
9 load_entry_point('pauvre==0.1924', 'console_scripts', 'pauvre')()
10 File "/usr/lib/python3/dist-packages/pauvre/pauvre_main.py", line 630, in main
11 args.func(parser, args)
12 File "/usr/lib/python3/dist-packages/pauvre/pauvre_main.py", line 64, in run_subtool
13 submodule.run(args)
14 File "/usr/lib/python3/dist-packages/pauvre/marginplot.py", line 403, in run
15 margin_plot(df=df.dropna(), **vars(args))
16 File "/usr/lib/python3/dist-packages/pauvre/marginplot.py", line 381, in margin_plot
17 if kwargs["BASENAME"] is None and not kwargs["path"] is None:
18 KeyError: 'path'
19 Origin: upstream, https://github.com/conchoecia/pauvre/commit/90fbe2f4c190ff897dfc8ae12971d5865682fc8a
20 Forwarded: https://github.com/conchoecia/pauvre/commit/90fbe2f4c190ff897dfc8ae12971d5865682fc8a
21 Applied-Upstream: https://github.com/conchoecia/pauvre/commit/90fbe2f4c190ff897dfc8ae12971d5865682fc8a
22 Last-Update: 2020-04-28
23 ---
24 This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
25 --- python-pauvre.orig/pauvre/marginplot.py
26 +++ python-pauvre/pauvre/marginplot.py
27 @@ -378,9 +378,7 @@
28 min_plot_qual, max_plot_qual, min_plot_length, max_plot_length),
29 file=stderr)
30 # Print image(s)
31 - if kwargs["BASENAME"] is None and not kwargs["path"] is None:
32 - file_base = kwargs["BASENAME"]
33 - elif kwargs["BASENAME"] is None:
34 + if kwargs["BASENAME"] is None:
35 file_base = opath.splitext(opath.basename(kwargs["fastq"]))[0]
36 else:
37 file_base = kwargs["BASENAME"]
11 2to3.patch
22 typo-redwood.patch
33 lsi-test-args.patch
4 fix-kwargs.patch