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.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.14.
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.TH PAUVRE "1" "April 2020" "pauvre 0.1924" "User Commands"
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.SH NAME
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pauvre \- QC and genome browser plotting Oxford Nanopore and PacBio long reads
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.SH DESCRIPTION
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usage: pauvre [\-h] [\-v]
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.IP
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{browser,custommargin,marginplot,redwood,stats,synplot} ...
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.SS "optional arguments:"
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.TP
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\fB\-h\fR, \fB\-\-help\fR
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show this help message and exit
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.TP
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\fB\-v\fR, \fB\-\-version\fR
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Installed pauvre version
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.SS "[sub-commands]:"
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.IP
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{browser,custommargin,marginplot,redwood,stats,synplot}
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.TP
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browser
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an adaptable genome browser with various track types
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.TP
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custommargin
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plot custom marginal histograms of tab\-delimited files
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.TP
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marginplot
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plot a marginal histogram of a fastq file
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.TP
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redwood
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make a redwood plot from a bam file
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.TP
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stats
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outputs stats from a fastq file
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.TP
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synplot
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make a synteny plot from a gff file, protein
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alignment, and partition file
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.SH "SEE ALSO"
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The full documentation for
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.B pauvre
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is maintained as a Texinfo manual. If the
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.B info
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and
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.B pauvre
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programs are properly installed at your site, the command
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.IP
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.B info pauvre
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.PP
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should give you access to the complete manual.
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