Package list python-pauvre / c10c531
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0 debian/pauvre.1
0 .\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.14.
1 .TH PAUVRE "1" "April 2020" "pauvre 0.1924" "User Commands"
2 .SH NAME
3 pauvre \- QC and genome browser plotting Oxford Nanopore and PacBio long reads
4 .SH DESCRIPTION
5 usage: pauvre [\-h] [\-v]
6 .IP
7 {browser,custommargin,marginplot,redwood,stats,synplot} ...
8 .SS "optional arguments:"
9 .TP
10 \fB\-h\fR, \fB\-\-help\fR
11 show this help message and exit
12 .TP
13 \fB\-v\fR, \fB\-\-version\fR
14 Installed pauvre version
15 .SS "[sub-commands]:"
16 .IP
17 {browser,custommargin,marginplot,redwood,stats,synplot}
18 .TP
19 browser
20 an adaptable genome browser with various track types
21 .TP
22 custommargin
23 plot custom marginal histograms of tab\-delimited files
24 .TP
25 marginplot
26 plot a marginal histogram of a fastq file
27 .TP
28 redwood
29 make a redwood plot from a bam file
30 .TP
31 stats
32 outputs stats from a fastq file
33 .TP
34 synplot
35 make a synteny plot from a gff file, protein
36 alignment, and partition file
37 .SH "SEE ALSO"
38 The full documentation for
39 .B pauvre
40 is maintained as a Texinfo manual. If the
41 .B info
42 and
43 .B pauvre
44 programs are properly installed at your site, the command
45 .IP
46 .B info pauvre
47 .PP
48 should give you access to the complete manual.