Package list python-pauvre / cbdef0f
Upstream applied several patches Andreas Tille 1 year, 4 months ago
4 changed file(s) with 0 addition(s) and 88 deletion(s). Raw diff Collapse all Expand all
+0
-38
debian/patches/fix-kwargs.patch less more
0 Description: fixed a small error with kwargs
1 cherry picked from upstream, fixes a crash when running the provided test
2 suite:
3 plotting in the following window:
4 0 <= Q-score (x-axis) <= 14.0
5 0 <= length (y-axis) <= 223383
6 .
7 Traceback (most recent call last):
8 File "/usr/bin/pauvre", line 11, in <module>
9 load_entry_point('pauvre==0.1924', 'console_scripts', 'pauvre')()
10 File "/usr/lib/python3/dist-packages/pauvre/pauvre_main.py", line 630, in main
11 args.func(parser, args)
12 File "/usr/lib/python3/dist-packages/pauvre/pauvre_main.py", line 64, in run_subtool
13 submodule.run(args)
14 File "/usr/lib/python3/dist-packages/pauvre/marginplot.py", line 403, in run
15 margin_plot(df=df.dropna(), **vars(args))
16 File "/usr/lib/python3/dist-packages/pauvre/marginplot.py", line 381, in margin_plot
17 if kwargs["BASENAME"] is None and not kwargs["path"] is None:
18 KeyError: 'path'
19 Origin: upstream, https://github.com/conchoecia/pauvre/commit/90fbe2f4c190ff897dfc8ae12971d5865682fc8a
20 Forwarded: https://github.com/conchoecia/pauvre/commit/90fbe2f4c190ff897dfc8ae12971d5865682fc8a
21 Applied-Upstream: https://github.com/conchoecia/pauvre/commit/90fbe2f4c190ff897dfc8ae12971d5865682fc8a
22 Last-Update: 2020-04-28
23 ---
24 This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
25 --- python-pauvre.orig/pauvre/marginplot.py
26 +++ python-pauvre/pauvre/marginplot.py
27 @@ -378,9 +378,7 @@
28 min_plot_qual, max_plot_qual, min_plot_length, max_plot_length),
29 file=stderr)
30 # Print image(s)
31 - if kwargs["BASENAME"] is None and not kwargs["path"] is None:
32 - file_base = kwargs["BASENAME"]
33 - elif kwargs["BASENAME"] is None:
34 + if kwargs["BASENAME"] is None:
35 file_base = opath.splitext(opath.basename(kwargs["fastq"]))[0]
36 else:
37 file_base = kwargs["BASENAME"]
+0
-22
debian/patches/fix-scikit-learn-resource-load.patch less more
0 Description: require scikit-learn instead of sklearn
1 This fixes a problem in pkg_resource loading when trying to start pauvre with
2 the provided command line interface. See the following for more details:
3 https://lists.debian.org/debian-python/2020/04/msg00146.html
4 Not sure yet if this is Debian specific. If not it might be worth contacting
5 upstream.
6 Author: Etienne Mollier <etienne.mollier@mailoo.org>
7 Forwarded: no
8 Last-Update: 2020-04-27
9 ---
10 This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
11 --- python-pauvre.orig/setup.py
12 +++ python-pauvre/setup.py
13 @@ -65,7 +65,7 @@
14 "pandas >= 0.20.1",
15 "numpy >= 1.12.1",
16 "scipy",
17 - "sklearn"
18 + "scikit-learn"
19 ],
20 entry_points={
21 'console_scripts': ['pauvre=pauvre.pauvre_main:main'],
0 fix-scikit-learn-resource-load.patch
10 2to3.patch
2 typo-redwood.patch
31 lsi-test-args.patch
4 fix-kwargs.patch
+0
-25
debian/patches/typo-redwood.patch less more
0 Description: p/redwood.py: fixed what looks like a typo
1 this typo issued the following message during byte-compilation:
2 .
3 byte-compiling /mnt/data/emollier/debian/python-pauvre/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/redwood.py to redwood.cpython-38.pyc
4 File "/usr/lib/python3.8/dist-packages/pauvre/redwood.py", line 706
5 ifargs.BASENAME is None:
6 ^
7 SyntaxError: invalid syntax
8 Author: Etienne Mollier <etienne.mollier@mailoo.org>
9 Bug: https://github.com/conchoecia/pauvre/pull/39
10 Applied-Upstream: https://github.com/conchoecia/pauvre/commit/6d55b8671b2797ae7ffeb8c8e9f2815851a4a3f8
11 Last-Update: 2020-05-01
12 ---
13 This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
14 --- python-pauvre.orig/pauvre/redwood.py
15 +++ python-pauvre/pauvre/redwood.py
16 @@ -703,7 +703,7 @@
17 end = time.time()
18 print(end - start)
19 # Print image(s)
20 - ifargs.BASENAME is None:
21 + if args.BASENAME is None:
22 file_base = "redwood"
23 else:
24 file_base = args.BASENAME