Fix autopkgtest
Andreas Tille
1 year, 5 months ago
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# Author: Sascha Steinbiss <satta@debian.org>
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set -e
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ORIGDIR=$(pwd)
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DATADIR=$ORIGDIR/t/data/genbank_gbff
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pkg=roary
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export LC_ALL=C.UTF-8
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if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
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cd $AUTOPKGTEST_TMP
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cp $DATADIR/*.gff .
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cp -a /usr/share/doc/${pkg}/examples/* .
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cp -a /usr/share/doc/${pkg}/expected_files.out .
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# DEBUG: roary issues "Cannot find the mcxdeblast executable, please ensure its in your PATH" thus checking ...
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which mcxdeblast
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[ -d out ]
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find out | LC_ALL=C sort | diff - $ORIGDIR/debian/tests/expected_files.out
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find out | LC_ALL=C sort | diff - expected_files.out
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