New upstream version 3.7.1+dfsg
Andreas Tille
7 years ago
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#
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# Pull in packages from testing
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#
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RUN apt-get update -qq
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#
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# Install Roary
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#
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RUN apt-get install roary
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RUN apt-get update -qq && apt-get install -y roary
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* Ubuntu/Debian
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* CentOS/RedHat
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* Homebrew/Linuxbrew - OSX/Linux
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* Guix - Linux
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* Virtual Machine - OSX/Linux/Windows
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* Docker
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* Installing from source - OSX/Linux
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* Virtual Machine - OSX/Linux/Windows
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If the installation fails please contact your system administrator. If you encounter a bug please let us know by emailing roary@sanger.ac.uk .
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More importantly though, if your trying to do bioinformatics on Windows, your not going to get very far and you should seriously consider upgrading to Linux.
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##Docker
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We have a docker container which gets automatically built from the latest version of Roary in Debian Med. To install it:
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```
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docker pull sangerpathogens/roary
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```
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To use it you would use a command such as this (substituting in your directories), where your GFF files are assumed to be stored in /home/ubuntu/data:
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```
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docker run --rm -it -v /home/ubuntu/data:/data sangerpathogens/roary roary -f /data /data/*.gff
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```
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##Installing from source (advanced Linux users only)
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As a last resort you can install everything from source. This is for users with advanced Linux skills and we do not provide any support with this method since you have the skills to figure things out.
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Download the latest software from (https://github.com/sanger-pathogens/Roary/tarball/master).
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package Bio::Roary::AnnotateGroups;
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# ABSTRACT: Take in a group file and assosiated GFF files for the isolates and update the group name to the gene name
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# ABSTRACT: Take in a group file and associated GFF files for the isolates and update the group name to the gene name
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=head1 SYNOPSIS
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Take in a group file and assosiated GFF files for the isolates and update the group name to the gene name
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Take in a group file and associated GFF files for the isolates and update the group name to the gene name
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use Bio::Roary::AnnotateGroups;
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my $obj = Bio::Roary::AnnotateGroups->new(
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