typos.patch: add; fix typos caught by lintian.
Étienne Mollier
1 year, 5 months ago
| 0 | Description: fix typos caught by lintian. | |
| 1 | Author: Étienne Mollier <emollier@debian.org> | |
| 2 | Forwarded: https://github.com/johnlees/seer/pull/79 | |
| 3 | Last-Update: 2022-11-06 | |
| 4 | --- | |
| 5 | This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ | |
| 6 | --- seer.orig/src/kmdsCmdLine.cpp | |
| 7 | +++ seer/src/kmdsCmdLine.cpp | |
| 8 | @@ -38,7 +38,7 @@ | |
| 9 | ("no_filtering", "turn off all filtering and do not output new kmer file") | |
| 10 | ("max_length", po::value<long int>()->default_value(max_length_default), "maximum kmer length") | |
| 11 | ("maf", po::value<double>()->default_value(maf_default), "minimum kmer frequency") | |
| 12 | - ("min_words", po::value<int>(), "minimum kmer occurences. Overrides --maf"); | |
| 13 | + ("min_words", po::value<int>(), "minimum kmer occurrences. Overrides --maf"); | |
| 14 | ||
| 15 | po::options_description other("Other options"); | |
| 16 | other.add_options() | |
| 17 | --- seer.orig/src/seerCmdLine.cpp | |
| 18 | +++ seer/src/seerCmdLine.cpp | |
| 19 | @@ -42,7 +42,7 @@ | |
| 20 | ("no_filtering", "turn off all filtering and perform tests on all kmers input") | |
| 21 | ("max_length", po::value<long int>()->default_value(max_length_default), "maximum kmer length") | |
| 22 | ("maf", po::value<double>()->default_value(maf_default), "minimum kmer frequency") | |
| 23 | - ("min_words", po::value<int>(), "minimum kmer occurences. Overrides --maf") | |
| 24 | + ("min_words", po::value<int>(), "minimum kmer occurrences. Overrides --maf") | |
| 25 | ("chisq", po::value<std::string>()->default_value(chisq_default), "p-value threshold for initial chi squared test. Set to 1 to show all") | |
| 26 | ("pval", po::value<std::string>()->default_value(pval_default), "p-value threshold for final logistic test. Set to 1 to show all"); | |
| 27 |