AC_INIT([snp-sites], m4_esyscmd([tr -d '\n' < VERSION]))
AM_INIT_AUTOMAKE([foreign subdir-objects])
AC_CONFIG_SRCDIR([configure.ac])
AC_CONFIG_HEADERS([config.h])
AC_CONFIG_MACRO_DIR([m4])
AC_CANONICAL_HOST
PKG_CHECK_MODULES([CHECK],[check >= 0.8.2],[have_check="yes"],
AC_MSG_WARN(["'Check' unit testing framework not found. It would be impossible to run unit tests!"])
[have_check="no"])
AC_CHECK_HEADERS([zlib.h math.h getopt.h])
AC_CHECK_LIB(m, floor)
AX_CHECK_ZLIB
AC_PROG_LIBTOOL
AC_PROG_CC
AC_PROG_CXX
AC_CONFIG_FILES([Makefile src/Makefile])
AC_OUTPUT