Commit 8f060bf0c1aa1b491f447c6b707bf57dc81796e3 - snp-sites

New upstream version 2.4.1 Sascha Steinbiss 5 years ago

5 changed file(s) with 16 addition(s) and 7 deletion(s). Raw diff Collapse all Expand all

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.gitignore less more

32	32	src/snp-sites
33	33	tests/.deps/*
34	34	tests/.dirstamp
	35	# vagrant runtime stuff
	36	.vagrant
	37	ubuntu-*-cloudimg-console.log

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Dockerfile less more

5	5	#
6	6	# Authorship
7	7	#
8		MAINTAINER ap13@sanger.ac.uk
	8	MAINTAINER path-help@sanger.ac.uk
9	9
10	10	#
11	11	# Pull in packages from testing

13	13	RUN apt-get update -qq
14	14
15	15	#
16		# Install Roary
	16	# Install SNP-sites
17	17	#
18		RUN apt-get install snp-sites
	18	RUN apt-get -y install snp-sites

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README.md less more

0	0	# SNP-sites
1	1	Rapidly extracts SNPs from a multi-FASTA alignment.
2	2
3		[![Build Status](https://travis-ci.org/sanger-pathogens/snp-sites.png?branch=master)](https://travis-ci.org/sanger-pathogens/snp-sites)
4		[![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-brightgreen.svg)](https://github.com/sanger-pathogens/snp-sites/blob/master/LICENSE)
5		[![status](https://img.shields.io/badge/MGEN-10.1099%2Fmgen.0.000056-brightgreen.svg)](http://mgen.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000056)
	3	[![Build Status](https://travis-ci.org/sanger-pathogens/snp-sites.png?branch=master)](https://travis-ci.org/sanger-pathogens/snp-sites)
	4	[![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-brightgreen.svg)](https://github.com/sanger-pathogens/snp-sites/blob/master/LICENSE)
	5	[![status](https://img.shields.io/badge/MGEN-10.1099%2Fmgen.0.000056-brightgreen.svg)](http://mgen.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000056)
	6	[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg)](http://bioconda.github.io/recipes/gubbins/README.html)
	7	[![Container ready](https://img.shields.io/badge/container-ready-brightgreen.svg)](https://quay.io/repository/biocontainers/gubbins)
	8	[![Docker Build Status](https://img.shields.io/docker/build/sangerpathogens/gubbins.svg)](https://hub.docker.com/r/sangerpathogens/gubbins)
	9	[![Docker Pulls](https://img.shields.io/docker/pulls/sangerpathogens/gubbins.svg)](https://hub.docker.com/r/sangerpathogens/gubbins)
	10
6	11
7	12	## Contents
8	13	* [Introduction](#introduction)

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VERSION less more

0		2.4.0
	0	2.4.1

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_config.yml less more

theme: jekyll-theme-cayman⏎