<!doctype refentry PUBLIC "-//OASIS//DTD DocBook V4.1//EN" [

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  <!-- Fill in your name for FIRSTNAME and SURNAME. -->
  <!ENTITY dhfirstname "<firstname>Steffen</firstname>">
  <!ENTITY dhsurname   "<surname>Möller</surname>">
  <!-- Please adjust the date whenever revising the manpage. -->
  <!ENTITY dhdate      "<date>November 10, 2004</date>">
  <!ENTITY dhsection   "<manvolnum>1</manvolnum>">
  <!ENTITY dhemail     "<email>moeller@debian.org</email>">
  <!ENTITY dhusername  "Steffen Moeller">
  <!ENTITY dhucpackage "<refentrytitle>TIGR-GLIMMER</refentrytitle>">
  <!ENTITY dhpackage   "tigr-glimmer">

  <!ENTITY debian      "<productname>Debian</productname>">
  <!ENTITY gnu         "<acronym>GNU</acronym>">
  <!ENTITY gpl         "&gnu; <acronym>GPL</acronym>">
]>

<refentry>
  <refentryinfo>
    <address>
      &dhemail;
    </address>
    <author>
      &dhfirstname;
      &dhsurname;
    </author>
    <copyright>
      <year>2003</year>
      <holder>&dhusername;</holder>
    </copyright>
    &dhdate;
  </refentryinfo>
  <refmeta>
    &dhucpackage;

    &dhsection;
  </refmeta>
  <refnamediv>
    <refname>&dhpackage;</refname>

    <refpurpose>
Apply the suite of programs within glimmer3 to a a prokaryotic or archean genome.
</refpurpose>
  </refnamediv>
  <refsynopsisdiv>
    <cmdsynopsis>
      <command>tigr-run-glimmer3</command>
    </cmdsynopsis>
  </refsynopsisdiv>
  <refsect1>
    <title>DESCRIPTION</title>
<para>
A shell script that wraps a set of tigr-* utilities of the glimmer package to retrieve coding regions.
</para>
  </refsect1>
  <refsect1>
    <title>SEE ALSO</title>
    <para>
tigr-glimmer3 (1),
tigr-adjust (1),
tigr-anomaly	(1),
tigr-build-icm (1),
tigr-check (1),
tigr-codon-usage (1),
tigr-compare-lists (1),
tigr-extract (1),
tigr-generate (1),
tigr-get-len (1),
tigr-get-putative (1),
tigr-long-orfs (1),
</para>
<para>
http://www.tigr.org/software/glimmer/
</para>

    <para>Please see the readme in /usr/share/doc/tigr-glimmer for a description on how to use Glimmer3.</para>
  </refsect1>
  <refsect1>
    <title>AUTHOR</title>

    <para>This manual page was quickly copied from the glimmer web site by &dhusername; &dhemail; for
      the &debian; system.
    </para>

  </refsect1>
</refentry>

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