Codebase list vmatch / 5fc91a2
Update upstream source from tag 'upstream/2.3.0+git20200101.0.b1bd228+dfsg' Update to upstream version '2.3.0+git20200101.0.b1bd228+dfsg' with Debian dir 89058dde057f01a3c4c51e66919d8b64e2b67f64 Sascha Steinbiss 4 years ago
6 changed file(s) with 6 addition(s) and 9 deletion(s). Raw diff Collapse all Expand all
+1
-1
src/Mkvtree/remainsort.c less more
194194 {
195195 if(left == right)
196196 {
197 printf("allready sorted(%lu,%lu,%lu)\n",
197 printf("already sorted(%lu,%lu,%lu)\n",
198198 (Showuint) depth,(Showuint) (left-rmnsufinfo->sortedsuffixes),
199199 (Showuint) (right-rmnsufinfo->sortedsuffixes));
200200 rmnsufinfo->countovermaxdepthsingle++;
+1
-1
src/Vmatch/allmclust.c less more
5555 }
5656 } else
5757 {
58 ERROR0("unkown matchclustertype");
58 ERROR0("unknown matchclustertype");
5959 return (Sint) -3;
6060 }
6161 }
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src/Vmatch/chncallparse.c less more
269269 "each followed by a number specifies the minimum\n"
270270 "length and the maximum error rate of thread\n"
271271 "1 refers to match instance in indexed sequence\n"
272 "2 refers to matchin instance in query");
272 "2 refers to matching instance in query");
273273 ADDOPTION(OPTSILENT,"-silent","do not output the chains\n"
274274 "and only report "
275275 "their lengths and scores");
+0
-3
src/kurtz/programversion.c less more
1010 char *cflags)
1111 {
1212 fprintf(fp, "%s (Vmatch) %s (%s)\n", program, version, compiledate);
13 fprintf(fp, "All rights reserved. Do not distribute.\n\n");
1413 fprintf(fp, "libvmatch:\n");
1514 fprintf(fp, "Copyright (c) 2000-2016 LScSA-Software GmbH\n\n");
1615 #ifndef NOLICENSEMANAGER
1716 fprintf(fp, "libzlm:\n");
1817 fprintf(fp, "Copyright (c) 2013-2016 Wikena GmbH\n\n");
1918 #endif
20 fprintf(fp, "LScSA-Software GmbH is the exclusive worldwide distributor of "
21 "Vmatch.\n");
2219 fprintf(fp, "Email: kurtz@zbh.uni-hamburg.de\n\n");
2320 fprintf(fp, "Compile flags: %s\n\n", cflags);
2421 fprintf(fp, "Vmatch is provided on an AS IS basis. The developers do not "
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src/kurtz-basic/multiseq-adv.c less more
14701470
14711471 if(!showdesc->defined)
14721472 {
1473 fprintf(stderr,"programm error: format specification for "
1473 fprintf(stderr,"programming error: format specification for "
14741474 "description is undefined\n");
14751475 exit(EXIT_FAILURE);
14761476 }
18781878 }
18791879 if(fscanf(fp,"littleendian=%ld\n",&readint1) != 1)
18801880 {
1881 ERROR2("%s.%s contains illegal line defining the endianess",
1881 ERROR2("%s.%s contains illegal line defining the endianness",
18821882 indexname,PROJECTFILESUFFIX);
18831883 return (Sint) -8;
18841884 }
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src/kurtz-basic/procopt.c less more
498498 DEBUG2(2,"Exclude %s %s\n",opt[indi].optname,opt[indj].optname);
499499 if(excludepairs[indi*numofopts+indj])
500500 {
501 ERROR2("option %s and option %s already specfied as excluded",
501 ERROR2("option %s and option %s already specified as excluded",
502502 opt[indi].optname,opt[indj].optname);
503503 return (Sint) -1;
504504 }