New upstream version 2.3.0+git20200101.0.b1bd228+dfsg
Sascha Steinbiss
4 years ago
194 | 194 |
{
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195 | 195 |
if(left == right)
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196 | 196 |
{
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197 | |
printf("allready sorted(%lu,%lu,%lu)\n",
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197 |
printf("already sorted(%lu,%lu,%lu)\n",
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198 | 198 |
(Showuint) depth,(Showuint) (left-rmnsufinfo->sortedsuffixes),
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199 | 199 |
(Showuint) (right-rmnsufinfo->sortedsuffixes));
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200 | 200 |
rmnsufinfo->countovermaxdepthsingle++;
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269 | 269 |
"each followed by a number specifies the minimum\n"
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270 | 270 |
"length and the maximum error rate of thread\n"
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271 | 271 |
"1 refers to match instance in indexed sequence\n"
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272 | |
"2 refers to matchin instance in query");
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272 |
"2 refers to matching instance in query");
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273 | 273 |
ADDOPTION(OPTSILENT,"-silent","do not output the chains\n"
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274 | 274 |
"and only report "
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275 | 275 |
"their lengths and scores");
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10 | 10 |
char *cflags)
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11 | 11 |
{
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12 | 12 |
fprintf(fp, "%s (Vmatch) %s (%s)\n", program, version, compiledate);
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13 | |
fprintf(fp, "All rights reserved. Do not distribute.\n\n");
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14 | 13 |
fprintf(fp, "libvmatch:\n");
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15 | 14 |
fprintf(fp, "Copyright (c) 2000-2016 LScSA-Software GmbH\n\n");
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16 | 15 |
#ifndef NOLICENSEMANAGER
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17 | 16 |
fprintf(fp, "libzlm:\n");
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18 | 17 |
fprintf(fp, "Copyright (c) 2013-2016 Wikena GmbH\n\n");
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19 | 18 |
#endif
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20 | |
fprintf(fp, "LScSA-Software GmbH is the exclusive worldwide distributor of "
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21 | |
"Vmatch.\n");
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22 | 19 |
fprintf(fp, "Email: kurtz@zbh.uni-hamburg.de\n\n");
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23 | 20 |
fprintf(fp, "Compile flags: %s\n\n", cflags);
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24 | 21 |
fprintf(fp, "Vmatch is provided on an AS IS basis. The developers do not "
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498 | 498 |
DEBUG2(2,"Exclude %s %s\n",opt[indi].optname,opt[indj].optname);
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499 | 499 |
if(excludepairs[indi*numofopts+indj])
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500 | 500 |
{
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501 | |
ERROR2("option %s and option %s already specfied as excluded",
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501 |
ERROR2("option %s and option %s already specified as excluded",
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502 | 502 |
opt[indi].optname,opt[indj].optname);
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503 | 503 |
return (Sint) -1;
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504 | 504 |
}
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